15 Search Results for "Cai, Walter"

Document
Survey
DOI: 10.4230/TGDK.3.2.1
Resilience in Knowledge Graph Embeddings

Authors: Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo

Published in: TGDK, Volume 3, Issue 2 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 2

Abstract
In recent years, knowledge graphs have gained interest and witnessed widespread applications in various domains, such as information retrieval, question-answering, recommendation systems, amongst others. Large-scale knowledge graphs to this end have demonstrated their utility in effectively representing structured knowledge. To further facilitate the application of machine learning techniques, knowledge graph embedding models have been developed. Such models can transform entities and relationships within knowledge graphs into vectors. However, these embedding models often face challenges related to noise, missing information, distribution shift, adversarial attacks, etc. This can lead to sub-optimal embeddings and incorrect inferences, thereby negatively impacting downstream applications. While the existing literature has focused so far on adversarial attacks on KGE models, the challenges related to the other critical aspects remain unexplored. In this paper, we, first of all, give a unified definition of resilience, encompassing several factors such as generalisation, in-distribution generalization, distribution adaption, and robustness. After formalizing these concepts for machine learning in general, we define them in the context of knowledge graphs. To find the gap in the existing works on resilience in the context of knowledge graphs, we perform a systematic survey, taking into account all these aspects mentioned previously. Our survey results show that most of the existing works focus on a specific aspect of resilience, namely robustness. After categorizing such works based on their respective aspects of resilience, we discuss the challenges and future research directions.
Cite as

Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo. Resilience in Knowledge Graph Embeddings. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 2, pp. 1:1-1:38, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{sharma_et_al:TGDK.3.2.1,
  author =	{Sharma, Arnab and Kouagou, N'Dah Jean and Ngomo, Axel-Cyrille Ngonga},
  title =	{{Resilience in Knowledge Graph Embeddings}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{1:1--1:38},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.2.1},
  URN =		{urn:nbn:de:0030-drops-248117},
  doi =		{10.4230/TGDK.3.2.1},
  annote =	{Keywords: Knowledge graphs, Resilience, Robustness}
}
Document
RANDOM
DOI: 10.4230/LIPIcs.APPROX/RANDOM.2025.68
Rapid Mixing via Coupling Independence for Spin Systems with Unbounded Degree

Authors: Xiaoyu Chen and Weiming Feng

Published in: LIPIcs, Volume 353, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)

Abstract
We develop a new framework to prove the mixing or relaxation time for the Glauber dynamics on spin systems with unbounded degree. It works for general spin systems including both 2-spin and multi-spin systems. As applications for this approach: - We prove the optimal O(n) relaxation time for the Glauber dynamics of random q-list-coloring on an n-vertices triangle-tree graph with maximum degree Δ such that q/Δ > α^⋆, where α^⋆ ≈ 1.763 is the unique positive solution of the equation α = exp(1/α). This improves the n^{1+o(1)} relaxation time for Glauber dynamics obtained by the previous work of Jain, Pham, and Vuong (2022). Besides, our framework can also give a near-linear time sampling algorithm under the same condition. - We prove the optimal O(n) relaxation time and near-optimal Õ(n) mixing time for the Glauber dynamics on hardcore models with parameter λ in balanced bipartite graphs such that λ < λ_c(Δ_L) for the max degree Δ_L in left part and the max degree Δ_R of right part satisfies Δ_R = O(Δ_L). This improves the previous result by Chen, Liu, and Yin (2023). At the heart of our proof is the notion of coupling independence which allows us to consider multiple vertices as a huge single vertex with exponentially large domain and do a "coarse-grained" local-to-global argument on spin systems. The technique works for general (multi) spin systems and helps us obtain some new comparison results for Glauber dynamics.
Cite as

Xiaoyu Chen and Weiming Feng. Rapid Mixing via Coupling Independence for Spin Systems with Unbounded Degree. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 353, pp. 68:1-68:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chen_et_al:LIPIcs.APPROX/RANDOM.2025.68,
  author =	{Chen, Xiaoyu and Feng, Weiming},
  title =	{{Rapid Mixing via Coupling Independence for Spin Systems with Unbounded Degree}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)},
  pages =	{68:1--68:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-397-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{353},
  editor =	{Ene, Alina and Chattopadhyay, Eshan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2025.68},
  URN =		{urn:nbn:de:0030-drops-244345},
  doi =		{10.4230/LIPIcs.APPROX/RANDOM.2025.68},
  annote =	{Keywords: coupling independence, Glauber dynamics, mixing times, relaxation times, spin systems}
}
Document
DOI: 10.4230/LIPIcs.WADS.2025.14
Quantum Speedups for Polynomial-Time Dynamic Programming Algorithms

Authors: Susanna Caroppo, Giordano Da Lozzo, Giuseppe Di Battista, Michael T. Goodrich, and Martin Nöllenburg

Published in: LIPIcs, Volume 349, 19th International Symposium on Algorithms and Data Structures (WADS 2025)

Abstract
We introduce a quantum dynamic programming framework that allows us to directly extend to the quantum realm a large body of classical dynamic programming algorithms. The corresponding quantum dynamic programming algorithms retain the same space complexity as their classical counterpart, while achieving a computational speedup. For a combinatorial (search or optimization) problem P and an instance I of P, such a speedup can be expressed in terms of the average degree δ of the {dependency digraph} G_𝒫(I) of I, determined by a recursive formulation of P. The nodes of this graph are the subproblems of P induced by I and its arcs are directed from each subproblem to those on whose solution it relies. In particular, our framework allows us to solve the considered problems in Õ(|V(G_𝒫(I))| √δ) time. As an example, we obtain a quantum version of the Bellman-Ford algorithm for computing shortest paths from a single source vertex to all the other vertices in a weighted n-vertex digraph with m edges that runs in Õ(n√{nm}) time, which improves the best known classical upper bound when m ∈ Ω(n^{1.4}).
Cite as

Susanna Caroppo, Giordano Da Lozzo, Giuseppe Di Battista, Michael T. Goodrich, and Martin Nöllenburg. Quantum Speedups for Polynomial-Time Dynamic Programming Algorithms. In 19th International Symposium on Algorithms and Data Structures (WADS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 349, pp. 14:1-14:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{caroppo_et_al:LIPIcs.WADS.2025.14,
  author =	{Caroppo, Susanna and Da Lozzo, Giordano and Di Battista, Giuseppe and Goodrich, Michael T. and N\"{o}llenburg, Martin},
  title =	{{Quantum Speedups for Polynomial-Time Dynamic Programming Algorithms}},
  booktitle =	{19th International Symposium on Algorithms and Data Structures (WADS 2025)},
  pages =	{14:1--14:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-398-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{349},
  editor =	{Morin, Pat and Oh, Eunjin},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WADS.2025.14},
  URN =		{urn:nbn:de:0030-drops-242454},
  doi =		{10.4230/LIPIcs.WADS.2025.14},
  annote =	{Keywords: Dynamic Programming, Quantum Algorithms, Quantum Random Access Memory}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.23
Which Graph Motif Parameters Count?

Authors: Markus Bläser, Radu Curticapean, Julian Dörfler, and Christian Ikenmeyer

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
For a fixed graph H, the function #Ind(H → ⋆) maps graphs G to the count of induced H-copies in G; this function obviously "counts something" in that it has a combinatorial interpretation. Linear combinations of such functions are called graph motif parameters and have recently received significant attention in counting complexity after a seminal paper by Curticapean, Dell and Marx (STOC'17). We show that, among linear combinations of functions #Ind(H → ⋆) involving only graphs H without isolated vertices, precisely those with positive integer coefficients maintain a combinatorial interpretation. It is important to note that graph motif parameters can be nonnegative for all inputs G, even when some coefficients are negative. Formally, we show that evaluating any graph motif parameter with a negative coefficient is impossible in an oracle variant of #P, where an implicit graph is accessed by oracle queries. Our proof follows the classification of the relativizing closure properties of #P by Hertrampf, Vollmer, and Wagner (SCT'95) and the framework developed by Ikenmeyer and Pak (STOC'22), but our application of the required Ramsey theorem turns out to be more subtle, as graphs do not have the required Ramsey property. Our techniques generalize from graphs to relational structures, including colored graphs. Vastly generalizing this, we introduce motif parameters over categories that count occurrences of sub-objects in the category. We then prove a general dichotomy theorem that characterizes which such parameters have a combinatorial interpretation. Using known results in Ramsey theory for categories, we obtain a dichotomy for motif parameters of finite vector spaces as well as parameter sets.
Cite as

Markus Bläser, Radu Curticapean, Julian Dörfler, and Christian Ikenmeyer. Which Graph Motif Parameters Count?. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 23:1-23:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{blaser_et_al:LIPIcs.MFCS.2025.23,
  author =	{Bl\"{a}ser, Markus and Curticapean, Radu and D\"{o}rfler, Julian and Ikenmeyer, Christian},
  title =	{{Which Graph Motif Parameters Count?}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{23:1--23:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.23},
  URN =		{urn:nbn:de:0030-drops-241307},
  doi =		{10.4230/LIPIcs.MFCS.2025.23},
  annote =	{Keywords: Graph motif parameters, Combinatorics, Combinatorial Interpretability}
}
Document
DOI: 10.4230/LIPIcs.DNA.31.4
Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems

Authors: Inhoo Lee, Salvador Buse, and Erik Winfree

Published in: LIPIcs, Volume 347, 31st International Conference on DNA Computing and Molecular Programming (DNA 31) (2025)

Abstract
Many molecular systems are best understood in terms of prototypical species and reactions. The central dogma and related biochemistry are rife with examples: gene i is transcribed into RNA i, which is translated into protein i; kinase n phosphorylates substrate m; protein p dimerizes with protein q. Engineered nucleic acid systems also often have this form: oligonucleotide i hybridizes to complementary oligonucleotide j; signal strand n displaces the output of seesaw gate m; hairpin p triggers the opening of target q. When there are many variants of a small number of prototypes, it can be conceptually cleaner and computationally more efficient to represent the full system in terms of indexed species (e.g. for dimerization, M_p, D_pq) and indexed reactions (M_p + M_q → D_pq). Here, we formalize the Indexed Chemical Reaction Network (ICRN) model and describe a Python software package designed to simulate such systems in the well-mixed and reaction-diffusion settings, using a differentiable programming framework originally developed for large-scale neural network models, taking advantage of GPU acceleration when available. Notably, this framework makes it straightforward to train the models’ initial conditions and rate constants to optimize a target behavior, such as matching experimental data, performing a computation, or exhibiting spatial pattern formation. The natural map of indexed chemical reaction networks onto neural network formalisms provides a tangible yet general perspective for translating concepts and techniques from the theory and practice of neural computation into the design of biomolecular systems.
Cite as

Inhoo Lee, Salvador Buse, and Erik Winfree. Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems. In 31st International Conference on DNA Computing and Molecular Programming (DNA 31). Leibniz International Proceedings in Informatics (LIPIcs), Volume 347, pp. 4:1-4:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lee_et_al:LIPIcs.DNA.31.4,
  author =	{Lee, Inhoo and Buse, Salvador and Winfree, Erik},
  title =	{{Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems}},
  booktitle =	{31st International Conference on DNA Computing and Molecular Programming (DNA 31)},
  pages =	{4:1--4:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-399-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{347},
  editor =	{Schaeffer, Josie and Zhang, Fei},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.31.4},
  URN =		{urn:nbn:de:0030-drops-238534},
  doi =		{10.4230/LIPIcs.DNA.31.4},
  annote =	{Keywords: Differentiable Programming, Chemical Reaction Networks, Reaction-Diffusion Systems}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.10
DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs

Authors: Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Determining the distance between two loci within a genomic region is a recurrent operation in various tasks in computational genomics. A notable example of this task arises in paired-end read mapping as a form of validation of distances between multiple alignments. While straightforward for a single genome, graph-based reference structures render the operation considerably more involved. Given the sheer number of such queries in a typical read mapping experiment, an efficient algorithm for answering distance queries is crucial. In this paper, we introduce DiVerG, a compact data structure as well as a fast and scalable algorithm, for constructing distance indexes for general sequence graphs on multi-core CPU and many-core GPU architectures. DiVerG is based on PairG [Jain et al., 2019], but overcomes the limitations of PairG by exploiting the extensive potential for improvements in terms of scalability and space efficiency. As a consequence, DiVerG can process substantially larger datasets, such as whole human genomes, which are unmanageable by PairG. DiVerG offers faster index construction time and consistently faster query time with gains proportional to the size of the underlying compact data structure. We demonstrate that our method performs favorably on multiple real datasets at various scales. DiVerG achieves superior performance over PairG; e.g. resulting to 2.5-4x speed-up in query time, 44-340x smaller index size, and 3-50x faster construction time for the genome graph of the MHC region, as a particularly variable region of the human genome. The implementation is available at: https://github.com/cartoonist/diverg
Cite as

Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall. DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 10:1-10:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ghaffaari_et_al:LIPIcs.WABI.2025.10,
  author =	{Ghaffaari, Ali and Sch\"{o}nhuth, Alexander and Marschall, Tobias},
  title =	{{DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{10:1--10:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.10},
  URN =		{urn:nbn:de:0030-drops-239369},
  doi =		{10.4230/LIPIcs.WABI.2025.10},
  annote =	{Keywords: Sequence graph, distance index, read mapping, sparse matrix}
}
Document
DOI: 10.4230/LIPIcs.ECRTS.2025.3
Enabling Containerisation of Distributed Applications with Real-Time Constraints

Authors: Nasim Samimi, Luca Abeni, Daniel Casini, Mauro Marinoni, Twan Basten, Mitra Nasri, Marc Geilen, and Alessandro Biondi

Published in: LIPIcs, Volume 335, 37th Euromicro Conference on Real-Time Systems (ECRTS 2025)

Abstract
Containerisation is becoming a cornerstone of modern distributed systems, thanks to their lightweight virtualisation, high portability, and seamless integration with orchestration tools such as Kubernetes. The usage of containers has also gained traction in real-time cyber-physical systems, such as software-defined vehicles, which are characterised by strict timing requirements to ensure safety and performance. Nevertheless, ensuring real-time execution of co-located containers is challenging because of mutual interference due to the sharing of the same processing hardware. Existing parallel computing frameworks such as Ray and its Kubernetes-enabled variant, KubeRay, excel in distributed computation but lack support for scheduling policies that allow guaranteeing real-time timing constraints and CPU resource isolation between containers, such as the SCHED_DEADLINE policy of Linux. To fill this gap, this paper extends Ray to support real-time containers that leverage SCHED_DEADLINE. To this end, we propose KubeDeadline, a novel, modular Kubernetes extension to support SCHED_DEADLINE. We evaluate our approach through extensive experiments, using synthetic workloads and a case study based on the MobileNet and EfficientNet deep neural networks. Our evaluation shows that KubeDeadline ensures deadline compliance in all synthetic workloads, adds minimal deployment overhead (in the order of milliseconds), and achieves lower worst-case response times, up to 4 times lower, than vanilla Kubernetes under background interference.
Cite as

Nasim Samimi, Luca Abeni, Daniel Casini, Mauro Marinoni, Twan Basten, Mitra Nasri, Marc Geilen, and Alessandro Biondi. Enabling Containerisation of Distributed Applications with Real-Time Constraints. In 37th Euromicro Conference on Real-Time Systems (ECRTS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 335, pp. 3:1-3:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{samimi_et_al:LIPIcs.ECRTS.2025.3,
  author =	{Samimi, Nasim and Abeni, Luca and Casini, Daniel and Marinoni, Mauro and Basten, Twan and Nasri, Mitra and Geilen, Marc and Biondi, Alessandro},
  title =	{{Enabling Containerisation of Distributed Applications with Real-Time Constraints}},
  booktitle =	{37th Euromicro Conference on Real-Time Systems (ECRTS 2025)},
  pages =	{3:1--3:29},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-377-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{335},
  editor =	{Mancuso, Renato},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECRTS.2025.3},
  URN =		{urn:nbn:de:0030-drops-235816},
  doi =		{10.4230/LIPIcs.ECRTS.2025.3},
  annote =	{Keywords: Kubernetes, real-time containers, SCHED\underlineDEADLINE, KubeRay}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.131
Deterministic Complexity Analysis of Hermitian Eigenproblems

Authors: Aleksandros Sobczyk

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
In this work we revisit the arithmetic and bit complexity of Hermitian eigenproblems. Recently, [BGVKS, FOCS 2020] proved that a (non-Hermitian) matrix A can be diagonalized with a randomized algorithm in O(n^{ω}log²(n/ε)) arithmetic operations, where ω≲ 2.371 is the square matrix multiplication exponent, and [Shah, SODA 2025] significantly improved the bit complexity for the Hermitian case. Our main goal is to obtain similar deterministic complexity bounds for various Hermitian eigenproblems. In the Real RAM model, we show that a Hermitian matrix can be diagonalized deterministically in O(n^{ω}log(n)+n²polylog(n/ε)) arithmetic operations, improving the classic deterministic Õ(n³) algorithms, and derandomizing the aforementioned state-of-the-art. The main technical step is a complete, detailed analysis of a well-known divide-and-conquer tridiagonal eigensolver of Gu and Eisenstat [GE95], when accelerated with the Fast Multipole Method, asserting that it can accurately diagonalize a symmetric tridiagonal matrix in nearly-O(n²) operations. In finite precision, we show that an algorithm by Schönhage [Sch72] to reduce a Hermitian matrix to tridiagonal form is stable in the floating point model, using O(log(n/ε)) bits of precision. This leads to a deterministic algorithm to compute all the eigenvalues of a Hermitian matrix in O(n^{ω}ℱ(log(n/ε)) + n²polylog(n/ε)) bit operations, where ℱ(b) ∈ Õ(b) is the bit complexity of a single floating point operation on b bits. This improves the best known Õ(n³) deterministic and O(n^{ω}log²(n/ε)ℱ(log(n/ε))) randomized complexities. We conclude with some other useful subroutines such as computing spectral gaps, condition numbers, and spectral projectors, and with some open problems.
Cite as

Aleksandros Sobczyk. Deterministic Complexity Analysis of Hermitian Eigenproblems. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 131:1-131:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{sobczyk:LIPIcs.ICALP.2025.131,
  author =	{Sobczyk, Aleksandros},
  title =	{{Deterministic Complexity Analysis of Hermitian Eigenproblems}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{131:1--131:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.131},
  URN =		{urn:nbn:de:0030-drops-235081},
  doi =		{10.4230/LIPIcs.ICALP.2025.131},
  annote =	{Keywords: Hermitian eigenproblem, eigenvalues, SVD, tridiagonal reduction, matrix multiplication time, diagonalization, bit complexity}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.136
The Converse of the Real Orthogonal Holant Theorem

Authors: Ben Young

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
The Holant theorem is a powerful tool for studying the computational complexity of counting problems. Due to the great expressiveness of the Holant framework, a converse to the Holant theorem would itself be a very powerful counting indistinguishability theorem. The most general converse does not hold, but we prove the following, still highly general, version: if any two sets of real-valued signatures are Holant-indistinguishable, then they are equivalent up to an orthogonal transformation. This resolves a partially open conjecture of Xia (2010). Consequences of this theorem include the well-known result that homomorphism counts from all graphs determine a graph up to isomorphism, the classical sufficient condition for simultaneous orthogonal similarity of sets of real matrices, and a combinatorial characterization of sets of simultaneosly orthogonally decomposable (odeco) symmetric tensors.
Cite as

Ben Young. The Converse of the Real Orthogonal Holant Theorem. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 136:1-136:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{young:LIPIcs.ICALP.2025.136,
  author =	{Young, Ben},
  title =	{{The Converse of the Real Orthogonal Holant Theorem}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{136:1--136:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.136},
  URN =		{urn:nbn:de:0030-drops-235138},
  doi =		{10.4230/LIPIcs.ICALP.2025.136},
  annote =	{Keywords: Holant, Counting Indistinguishability, Odeco}
}
Document
DOI: 10.4230/LIPIcs.ICDT.2025.17
Partition Constraints for Conjunctive Queries: Bounds and Worst-Case Optimal Joins

Authors: Kyle Deeds and Timo Camillo Merkl

Published in: LIPIcs, Volume 328, 28th International Conference on Database Theory (ICDT 2025)

Abstract
In the last decade, various works have used statistics on relations to improve both the theory and practice of conjunctive query execution. Starting with the AGM bound which took advantage of relation sizes, later works incorporated statistics like functional dependencies and degree constraints. Each new statistic prompted work along two lines; bounding the size of conjunctive query outputs and worst-case optimal join algorithms. In this work, we continue in this vein by introducing a new statistic called a partition constraint. This statistic captures latent structure within relations by partitioning them into sub-relations which each have much tighter degree constraints. We show that this approach can both refine existing cardinality bounds and improve existing worst-case optimal join algorithms.
Cite as

Kyle Deeds and Timo Camillo Merkl. Partition Constraints for Conjunctive Queries: Bounds and Worst-Case Optimal Joins. In 28th International Conference on Database Theory (ICDT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 328, pp. 17:1-17:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{deeds_et_al:LIPIcs.ICDT.2025.17,
  author =	{Deeds, Kyle and Merkl, Timo Camillo},
  title =	{{Partition Constraints for Conjunctive Queries: Bounds and Worst-Case Optimal Joins}},
  booktitle =	{28th International Conference on Database Theory (ICDT 2025)},
  pages =	{17:1--17:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-364-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{328},
  editor =	{Roy, Sudeepa and Kara, Ahmet},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICDT.2025.17},
  URN =		{urn:nbn:de:0030-drops-229588},
  doi =		{10.4230/LIPIcs.ICDT.2025.17},
  annote =	{Keywords: Worst-Case Optimal Joins, Cardinality Bounds, Degeneracy, Degree Constraints, Partition Constraints}
}
Document
Invited Talk
DOI: 10.4230/LIPIcs.ICDT.2025.1
The Quest for Faster Join Algorithms (Invited Talk)

Authors: Paraschos Koutris, Shaleen Deep, Austen Fan, and Hangdong Zhao

Published in: LIPIcs, Volume 328, 28th International Conference on Database Theory (ICDT 2025)

Abstract
Joins are the cornerstone of relational databases. Surprisingly, even after several decades of research in the systems and theory database community, we still lack an understanding of how to design the fastest possible join algorithm. In this talk, we will present the exciting progress the database theory community has achieved in join algorithms over the last two decades. The talk will revolve around five key ideas fundamentally shaping this research area: tree decompositions, data partitioning, leveraging statistical information, enumeration, and algebraic techniques.
Cite as

Paraschos Koutris, Shaleen Deep, Austen Fan, and Hangdong Zhao. The Quest for Faster Join Algorithms (Invited Talk). In 28th International Conference on Database Theory (ICDT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 328, pp. 1:1-1:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{koutris_et_al:LIPIcs.ICDT.2025.1,
  author =	{Koutris, Paraschos and Deep, Shaleen and Fan, Austen and Zhao, Hangdong},
  title =	{{The Quest for Faster Join Algorithms}},
  booktitle =	{28th International Conference on Database Theory (ICDT 2025)},
  pages =	{1:1--1:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-364-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{328},
  editor =	{Roy, Sudeepa and Kara, Ahmet},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICDT.2025.1},
  URN =		{urn:nbn:de:0030-drops-229428},
  doi =		{10.4230/LIPIcs.ICDT.2025.1},
  annote =	{Keywords: Conjunctive Queries, Joins, Tree Decompositions, Enumeration, Semirings}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.37
On the Existential Theory of the Reals Enriched with Integer Powers of a Computable Number

Authors: Jorge Gallego-Hernández and Alessio Mansutti

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
This paper investigates ∃ℝ(ξ^ℤ), that is the extension of the existential theory of the reals by an additional unary predicate ξ^ℤ for the integer powers of a fixed computable real number ξ > 0. If all we have access to is a Turing machine computing ξ, it is not possible to decide whether an input formula from this theory is satisfiable. However, we show an algorithm to decide this problem when - ξ is known to be transcendental, or - ξ is a root of some given integer polynomial (that is, ξ is algebraic). In other words, knowing the algebraicity of ξ suffices to circumvent undecidability. Furthermore, we establish complexity results under the proviso that ξ enjoys what we call a polynomial root barrier. Using this notion, we show that the satisfiability problem of ∃ℝ(ξ^ℤ) is - in ExpSpace if ξ is an algebraic number, and - in 3Exp if ξ is a logarithm of an algebraic number, Euler’s e, or the number π, among others. To establish our results, we first observe that the satisfiability problem of ∃ℝ(ξ^ℤ) reduces in exponential time to the problem of solving quantifier-free instances of the theory of the reals where variables range over ξ^ℤ. We then prove that these instances have a small witness property: only finitely many integer powers of ξ must be considered to find whether a formula is satisfiable. Our complexity results are shown by relying on well-established machinery from Diophantine approximation and transcendental number theory, such as bounds for the transcendence measure of numbers. As a by-product of our results, we are able to remove the appeal to Schanuel’s conjecture from the proof of decidability of the entropic risk threshold problem for stochastic games with rational probabilities, rewards and threshold [Baier et al., MFCS, 2023]: when the base of the entropic risk is e and the aversion factor is a fixed algebraic number, the problem is (unconditionally) in Exp.
Cite as

Jorge Gallego-Hernández and Alessio Mansutti. On the Existential Theory of the Reals Enriched with Integer Powers of a Computable Number. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 37:1-37:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gallegohernandez_et_al:LIPIcs.STACS.2025.37,
  author =	{Gallego-Hern\'{a}ndez, Jorge and Mansutti, Alessio},
  title =	{{On the Existential Theory of the Reals Enriched with Integer Powers of a Computable Number}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{37:1--37:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.37},
  URN =		{urn:nbn:de:0030-drops-228635},
  doi =		{10.4230/LIPIcs.STACS.2025.37},
  annote =	{Keywords: Theory of the reals with exponentiation, decision procedures, computability}
}
Document
Vision
DOI: 10.4230/TGDK.1.1.3
Knowledge Engineering Using Large Language Models

Authors: Bradley P. Allen, Lise Stork, and Paul Groth

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
Knowledge engineering is a discipline that focuses on the creation and maintenance of processes that generate and apply knowledge. Traditionally, knowledge engineering approaches have focused on knowledge expressed in formal languages. The emergence of large language models and their capabilities to effectively work with natural language, in its broadest sense, raises questions about the foundations and practice of knowledge engineering. Here, we outline the potential role of LLMs in knowledge engineering, identifying two central directions: 1) creating hybrid neuro-symbolic knowledge systems; and 2) enabling knowledge engineering in natural language. Additionally, we formulate key open research questions to tackle these directions.
Cite as

Bradley P. Allen, Lise Stork, and Paul Groth. Knowledge Engineering Using Large Language Models. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 3:1-3:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{allen_et_al:TGDK.1.1.3,
  author =	{Allen, Bradley P. and Stork, Lise and Groth, Paul},
  title =	{{Knowledge Engineering Using Large Language Models}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{3:1--3:19},
  ISSN =	{2942-7517},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.3},
  URN =		{urn:nbn:de:0030-drops-194777},
  doi =		{10.4230/TGDK.1.1.3},
  annote =	{Keywords: knowledge engineering, large language models}
}
Document
DOI: 10.4230/LIPIcs.ICDT.2023.8
Degree Sequence Bound for Join Cardinality Estimation

Authors: Kyle Deeds, Dan Suciu, Magda Balazinska, and Walter Cai

Published in: LIPIcs, Volume 255, 26th International Conference on Database Theory (ICDT 2023)

Abstract
Recent work has demonstrated the catastrophic effects of poor cardinality estimates on query processing time. In particular, underestimating query cardinality can result in overly optimistic query plans which take orders of magnitude longer to complete than one generated with the true cardinality. Cardinality bounding avoids this pitfall by computing an upper bound on the query’s output size using statistics about the database such as table sizes and degrees, i.e. value frequencies. In this paper, we extend this line of work by proving a novel bound called the Degree Sequence Bound which takes into account the full degree sequences and the max tuple multiplicity. This work focuses on the important class of Berge-Acyclic queries for which the Degree Sequence Bound is tight. Further, we describe how to practically compute this bound using a functional approximation of the true degree sequences and prove that even this functional form improves upon previous bounds.
Cite as

Kyle Deeds, Dan Suciu, Magda Balazinska, and Walter Cai. Degree Sequence Bound for Join Cardinality Estimation. In 26th International Conference on Database Theory (ICDT 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 255, pp. 8:1-8:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@InProceedings{deeds_et_al:LIPIcs.ICDT.2023.8,
  author =	{Deeds, Kyle and Suciu, Dan and Balazinska, Magda and Cai, Walter},
  title =	{{Degree Sequence Bound for Join Cardinality Estimation}},
  booktitle =	{26th International Conference on Database Theory (ICDT 2023)},
  pages =	{8:1--8:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-270-9},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{255},
  editor =	{Geerts, Floris and Vandevoort, Brecht},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICDT.2023.8},
  URN =		{urn:nbn:de:0030-drops-177508},
  doi =		{10.4230/LIPIcs.ICDT.2023.8},
  annote =	{Keywords: Cardinality Estimation, Cardinality Bounding, Degree Bounds, Functional Approximation, Query Planning, Berge-Acyclic Queries}
}
Document
DOI: 10.4230/LITES.8.1.3
HW-Flow: A Multi-Abstraction Level HW-CNN Codesign Pruning Methodology

Authors: Manoj-Rohit Vemparala, Nael Fasfous, Alexander Frickenstein, Emanuele Valpreda, Manfredi Camalleri, Qi Zhao, Christian Unger, Naveen-Shankar Nagaraja, Maurizio Martina, and Walter Stechele

Published in: LITES, Volume 8, Issue 1 (2022): Special Issue on Embedded Systems for Computer Vision. Leibniz Transactions on Embedded Systems, Volume 8, Issue 1

Abstract
Convolutional neural networks (CNNs) have produced unprecedented accuracy for many computer vision problems in the recent past. In power and compute-constrained embedded platforms, deploying modern CNNs can present many challenges. Most CNN architectures do not run in real-time due to the high number of computational operations involved during the inference phase. This emphasizes the role of CNN optimization techniques in early design space exploration. To estimate their efficacy in satisfying the target constraints, existing techniques are either hardware (HW) agnostic, pseudo-HW-aware by considering parameter and operation counts, or HW-aware through inflexible hardware-in-the-loop (HIL) setups. In this work, we introduce HW-Flow, a framework for optimizing and exploring CNN models based on three levels of hardware abstraction: Coarse, Mid and Fine. Through these levels, CNN design and optimization can be iteratively refined towards efficient execution on the target hardware platform. We present HW-Flow in the context of CNN pruning by augmenting a reinforcement learning agent with key metrics to understand the influence of its pruning actions on the inference hardware. With 2× reduction in energy and latency, we prune ResNet56, ResNet50, and DeepLabv3 with minimal accuracy degradation on the CIFAR-10, ImageNet, and CityScapes datasets, respectively.
Cite as

Manoj-Rohit Vemparala, Nael Fasfous, Alexander Frickenstein, Emanuele Valpreda, Manfredi Camalleri, Qi Zhao, Christian Unger, Naveen-Shankar Nagaraja, Maurizio Martina, and Walter Stechele. HW-Flow: A Multi-Abstraction Level HW-CNN Codesign Pruning Methodology. In LITES, Volume 8, Issue 1 (2022): Special Issue on Embedded Systems for Computer Vision. Leibniz Transactions on Embedded Systems, Volume 8, Issue 1, pp. 03:1-03:30, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

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@Article{vemparala_et_al:LITES.8.1.3,
  author =	{Vemparala, Manoj-Rohit and Fasfous, Nael and Frickenstein, Alexander and Valpreda, Emanuele and Camalleri, Manfredi and Zhao, Qi and Unger, Christian and Nagaraja, Naveen-Shankar and Martina, Maurizio and Stechele, Walter},
  title =	{{HW-Flow: A Multi-Abstraction Level HW-CNN Codesign Pruning Methodology}},
  journal =	{Leibniz Transactions on Embedded Systems},
  pages =	{03:1--03:30},
  ISSN =	{2199-2002},
  year =	{2022},
  volume =	{8},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LITES.8.1.3},
  URN =		{urn:nbn:de:0030-drops-192905},
  doi =		{10.4230/LITES.8.1.3},
  annote =	{Keywords: Convolutional Neural Networks, Optimization, Hardware Modeling, Pruning}
}
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