17 Search Results for "Fu, Cheng"

Document
DOI: 10.4230/OASIcs.SpaceCHI.2025.22
Mixed-Initiative Dynamic Autonomy Through Variable Levels of Immersion and Control (MIDA-VIC): A New Paradigm for Collaborative Robotic Teleoperation in Space Exploration

Authors: Hans-Christian Jetter, Leon Raule, Jens Gerken, and Sören Pirk

Published in: OASIcs, Volume 130, Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)

Abstract
In this position paper, we propose the new control paradigm and conceptual framework MIDA-VIC for collaborative robotic teleoperation in space exploration and beyond. Such teleoperation is a complex and demanding team effort with distributed responsibilities that require both efficient human-robot and human-human collaboration. To address these challenges, we propose a new paradigm of mixed-initiative dynamic autonomy for robotic teleoperation. It exploits recent advances in human-computer interaction (HCI), human-robot interaction (HRI), augmented and virtual reality (AR/VR), and artificial intelligence (AI) research. By integrating methods from multiple fields, our paradigm allows human operators to choose their preferred level of immersion, from traditional 2D graphical user interfaces (GUIs) to fully immersive AR/VR environments. It also supports a dynamic adjustment of the level of control, ranging from direct motor commands (e.g., using a joystick) to high-level task delegation using AI (e.g., instructing the robot via natural language to select a path or explore autonomously). In addition, we propose a mixed-initiative paradigm in which a robot can also take the initiative, request human assistance, and propose the specific level of immersion and control to the human operator that it currently considers useful for effective and efficient collaboration.
Cite as

Hans-Christian Jetter, Leon Raule, Jens Gerken, and Sören Pirk. Mixed-Initiative Dynamic Autonomy Through Variable Levels of Immersion and Control (MIDA-VIC): A New Paradigm for Collaborative Robotic Teleoperation in Space Exploration. In Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025). Open Access Series in Informatics (OASIcs), Volume 130, pp. 22:1-22:10, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{jetter_et_al:OASIcs.SpaceCHI.2025.22,
  author =	{Jetter, Hans-Christian and Raule, Leon and Gerken, Jens and Pirk, S\"{o}ren},
  title =	{{Mixed-Initiative Dynamic Autonomy Through Variable Levels of Immersion and Control (MIDA-VIC): A New Paradigm for Collaborative Robotic Teleoperation in Space Exploration}},
  booktitle =	{Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)},
  pages =	{22:1--22:10},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-384-3},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{130},
  editor =	{Bensch, Leonie and Nilsson, Tommy and Nisser, Martin and Pataranutaporn, Pat and Schmidt, Albrecht and Sumini, Valentina},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SpaceCHI.2025.22},
  URN =		{urn:nbn:de:0030-drops-240122},
  doi =		{10.4230/OASIcs.SpaceCHI.2025.22},
  annote =	{Keywords: Collaboration, Teleoperation, Robot, Space Exploration}
}
Document
DOI: 10.4230/LIPIcs.CONCUR.2025.31
Compositional Reasoning for Parametric Probabilistic Automata

Authors: Hannah Mertens, Tim Quatmann, and Joost-Pieter Katoen

Published in: LIPIcs, Volume 348, 36th International Conference on Concurrency Theory (CONCUR 2025)

Abstract
We establish an assume-guarantee (AG) framework for compositional reasoning about multi-objective queries in parametric probabilistic automata (pPA) - an extension to probabilistic automata (PA), where transition probabilities are functions over a finite set of parameters. We lift an existing framework for PA to the pPA setting, incorporating asymmetric, circular, and interleaving proof rules. Our approach enables the verification of a broad spectrum of multi-objective queries for pPA, encompassing probabilistic properties and (parametric) expected total rewards. Additionally, we introduce a rule for reasoning about monotonicity in composed pPAs.
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Hannah Mertens, Tim Quatmann, and Joost-Pieter Katoen. Compositional Reasoning for Parametric Probabilistic Automata. In 36th International Conference on Concurrency Theory (CONCUR 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 348, pp. 31:1-31:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{mertens_et_al:LIPIcs.CONCUR.2025.31,
  author =	{Mertens, Hannah and Quatmann, Tim and Katoen, Joost-Pieter},
  title =	{{Compositional Reasoning for Parametric Probabilistic Automata}},
  booktitle =	{36th International Conference on Concurrency Theory (CONCUR 2025)},
  pages =	{31:1--31:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-389-8},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{348},
  editor =	{Bouyer, Patricia and van de Pol, Jaco},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CONCUR.2025.31},
  URN =		{urn:nbn:de:0030-drops-239810},
  doi =		{10.4230/LIPIcs.CONCUR.2025.31},
  annote =	{Keywords: Verification, Probabilistic systems, Assume-guarantee reasoning, Parametric Probabilistic Automata, Parameter synthesis}
}
Document
DOI: 10.4230/LIPIcs.GIScience.2025.12
Large Multi-Modal Model Cartographic Map Comprehension for Textual Locality Georeferencing

Authors: Kalana Wijegunarathna, Kristin Stock, and Christopher B. Jones

Published in: LIPIcs, Volume 346, 13th International Conference on Geographic Information Science (GIScience 2025)

Abstract
Millions of biological sample records collected in the last few centuries archived in natural history collections are un-georeferenced. Georeferencing complex locality descriptions associated with these collection samples is a highly labour-intensive task collection agencies struggle with. None of the existing automated methods exploit maps that are an essential tool for georeferencing complex relations. We present preliminary experiments and results of a novel method that exploits multi-modal capabilities of recent Large Multi-Modal Models (LMM). This method enables the model to visually contextualize spatial relations it reads in the locality description. We use a grid-based approach to adapt these auto-regressive models for this task in a zero-shot setting. Our experiments conducted on a small manually annotated dataset show impressive results for our approach (∼1 km Average distance error) compared to uni-modal georeferencing with Large Language Models and existing georeferencing tools. The paper also discusses the findings of the experiments in light of an LMM’s ability to comprehend fine-grained maps. Motivated by these results, a practical framework is proposed to integrate this method into a georeferencing workflow.
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Kalana Wijegunarathna, Kristin Stock, and Christopher B. Jones. Large Multi-Modal Model Cartographic Map Comprehension for Textual Locality Georeferencing. In 13th International Conference on Geographic Information Science (GIScience 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 346, pp. 12:1-12:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{wijegunarathna_et_al:LIPIcs.GIScience.2025.12,
  author =	{Wijegunarathna, Kalana and Stock, Kristin and Jones, Christopher B.},
  title =	{{Large Multi-Modal Model Cartographic Map Comprehension for Textual Locality Georeferencing}},
  booktitle =	{13th International Conference on Geographic Information Science (GIScience 2025)},
  pages =	{12:1--12:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-378-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{346},
  editor =	{Sila-Nowicka, Katarzyna and Moore, Antoni and O'Sullivan, David and Adams, Benjamin and Gahegan, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GIScience.2025.12},
  URN =		{urn:nbn:de:0030-drops-238412},
  doi =		{10.4230/LIPIcs.GIScience.2025.12},
  annote =	{Keywords: Large Multi-Modal Models, Large Language Models, LLM, Georeferencing, Natural History collections}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.10
DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs

Authors: Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Determining the distance between two loci within a genomic region is a recurrent operation in various tasks in computational genomics. A notable example of this task arises in paired-end read mapping as a form of validation of distances between multiple alignments. While straightforward for a single genome, graph-based reference structures render the operation considerably more involved. Given the sheer number of such queries in a typical read mapping experiment, an efficient algorithm for answering distance queries is crucial. In this paper, we introduce DiVerG, a compact data structure as well as a fast and scalable algorithm, for constructing distance indexes for general sequence graphs on multi-core CPU and many-core GPU architectures. DiVerG is based on PairG [Jain et al., 2019], but overcomes the limitations of PairG by exploiting the extensive potential for improvements in terms of scalability and space efficiency. As a consequence, DiVerG can process substantially larger datasets, such as whole human genomes, which are unmanageable by PairG. DiVerG offers faster index construction time and consistently faster query time with gains proportional to the size of the underlying compact data structure. We demonstrate that our method performs favorably on multiple real datasets at various scales. DiVerG achieves superior performance over PairG; e.g. resulting to 2.5-4x speed-up in query time, 44-340x smaller index size, and 3-50x faster construction time for the genome graph of the MHC region, as a particularly variable region of the human genome. The implementation is available at: https://github.com/cartoonist/diverg
Cite as

Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall. DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 10:1-10:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ghaffaari_et_al:LIPIcs.WABI.2025.10,
  author =	{Ghaffaari, Ali and Sch\"{o}nhuth, Alexander and Marschall, Tobias},
  title =	{{DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{10:1--10:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.10},
  URN =		{urn:nbn:de:0030-drops-239369},
  doi =		{10.4230/LIPIcs.WABI.2025.10},
  annote =	{Keywords: Sequence graph, distance index, read mapping, sparse matrix}
}
Document
DOI: 10.4230/LIPIcs.ECRTS.2025.2
Multi-Objective Memory Bandwidth Regulation and Cache Partitioning for Multicore Real-Time Systems

Authors: Binqi Sun, Zhihang Wei, Andrea Bastoni, Debayan Roy, Mirco Theile, Tomasz Kloda, Rodolfo Pellizzoni, and Marco Caccamo

Published in: LIPIcs, Volume 335, 37th Euromicro Conference on Real-Time Systems (ECRTS 2025)

Abstract
Memory bandwidth regulation and cache partitioning are widely used techniques for achieving predictable timing in real-time computing systems. Combined with partitioned scheduling, these methods require careful co-allocation of tasks and resources to cores, as task execution times strongly depend on available allocated resources. To address this challenge, this paper presents a 0-1 linear program for task-resource co-allocation, along with a multi-objective heuristic designed to minimize resource usage while guaranteeing schedulability under a preemptive EDF scheduling policy. Our heuristic employs a multi-layer framework, where an outer layer explores resource allocations using Pareto-pruned search, and an inner layer optimizes task allocation by solving a knapsack problem using dynamic programming. To evaluate the performance of the proposed optimization algorithm, we profile real-world benchmarks on an embedded AMD UltraScale+ ZCU102 platform, with fine-grained resource partitioning enabled by the Jailhouse hypervisor, leveraging cache set partitioning and MemGuard for memory bandwidth regulation. Experiments based on the benchmarking results show that the proposed 0-1 linear program outperforms existing mixed-integer programs by finding more optimal solutions within the same time limit. Moreover, the proposed multi-objective multi-layer heuristic performs consistently better than the state-of-the-art multi-resource-task co-allocation algorithm in terms of schedulability, resource usage, number of non-dominated solutions, and computational efficiency.
Cite as

Binqi Sun, Zhihang Wei, Andrea Bastoni, Debayan Roy, Mirco Theile, Tomasz Kloda, Rodolfo Pellizzoni, and Marco Caccamo. Multi-Objective Memory Bandwidth Regulation and Cache Partitioning for Multicore Real-Time Systems. In 37th Euromicro Conference on Real-Time Systems (ECRTS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 335, pp. 2:1-2:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{sun_et_al:LIPIcs.ECRTS.2025.2,
  author =	{Sun, Binqi and Wei, Zhihang and Bastoni, Andrea and Roy, Debayan and Theile, Mirco and Kloda, Tomasz and Pellizzoni, Rodolfo and Caccamo, Marco},
  title =	{{Multi-Objective Memory Bandwidth Regulation and Cache Partitioning for Multicore Real-Time Systems}},
  booktitle =	{37th Euromicro Conference on Real-Time Systems (ECRTS 2025)},
  pages =	{2:1--2:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-377-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{335},
  editor =	{Mancuso, Renato},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECRTS.2025.2},
  URN =		{urn:nbn:de:0030-drops-235807},
  doi =		{10.4230/LIPIcs.ECRTS.2025.2},
  annote =	{Keywords: Multi-objective optimization, memory bandwidth regulation, cache partitioning, partitioned scheduling, real-time systems}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.81
Worst-Case and Average-Case Hardness of Hypercycle and Database Problems

Authors: Cheng-Hao Fu, Andrea Lincoln, and Rene Reyes

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
In this paper we present tight lower-bounds and new upper-bounds for hypergraph and database problems. We give tight lower-bounds for finding minimum hypercycles. We give tight lower-bounds for a substantial regime of unweighted hypercycle. We also give a new faster algorithm for longer unweighted hypercycles. We give a worst-case to average-case reduction from detecting a subgraph of a hypergraph in the worst-case to counting subgraphs of hypergraphs in the average-case. We demonstrate two applications of this worst-case to average-case reduction, which result in average-case lower bounds for counting counting hypercycles in random hypergraphs and queries in average-case databases. Our tight upper and lower bounds for hypercycle detection in the worst-case have immediate implications for the average-case via our worst-case to average-case reductions.
Cite as

Cheng-Hao Fu, Andrea Lincoln, and Rene Reyes. Worst-Case and Average-Case Hardness of Hypercycle and Database Problems. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 81:1-81:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{fu_et_al:LIPIcs.ICALP.2025.81,
  author =	{Fu, Cheng-Hao and Lincoln, Andrea and Reyes, Rene},
  title =	{{Worst-Case and Average-Case Hardness of Hypercycle and Database Problems}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{81:1--81:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.81},
  URN =		{urn:nbn:de:0030-drops-234581},
  doi =		{10.4230/LIPIcs.ICALP.2025.81},
  annote =	{Keywords: Hypergraphs, hypercycles, fine-grained complexity, average-case complexity, databases}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.36
Efficient Neural Network Verification via Order Leading Exploration of Branch-and-Bound Trees

Authors: Guanqin Zhang, Kota Fukuda, Zhenya Zhang, H.M.N. Dilum Bandara, Shiping Chen, Jianjun Zhao, and Yulei Sui

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
The vulnerability of neural networks to adversarial perturbations has necessitated formal verification techniques that can rigorously certify the quality of neural networks. As the state-of-the-art, branch-and-bound (BaB) is a "divide-and-conquer" strategy that applies off-the-shelf verifiers to sub-problems for which they perform better. While BaB can identify the sub-problems that are necessary to be split, it explores the space of these sub-problems in a naive "first-come-first-served" manner, thereby suffering from an issue of inefficiency to reach a verification conclusion. To bridge this gap, we introduce an order over different sub-problems produced by BaB, concerning with their different likelihoods of containing counterexamples. Based on this order, we propose a novel verification framework Oliva that explores the sub-problem space by prioritizing those sub-problems that are more likely to find counterexamples, in order to efficiently reach the conclusion of the verification. Even if no counterexample can be found in any sub-problem, it only changes the order of visiting different sub-problems and so will not lead to a performance degradation. Specifically, Oliva has two variants, including Oliva^GR, a greedy strategy that always prioritizes the sub-problems that are more likely to find counterexamples, and Oliva^SA, a balanced strategy inspired by simulated annealing that gradually shifts from exploration to exploitation to locate the globally optimal sub-problems. We experimentally evaluate the performance of Oliva on 690 verification problems spanning over 5 models with datasets MNIST and CIFAR-10. Compared to the state-of-the-art approaches, we demonstrate the speedup of Oliva for up to 25× in MNIST, and up to 80× in CIFAR-10.
Cite as

Guanqin Zhang, Kota Fukuda, Zhenya Zhang, H.M.N. Dilum Bandara, Shiping Chen, Jianjun Zhao, and Yulei Sui. Efficient Neural Network Verification via Order Leading Exploration of Branch-and-Bound Trees. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 36:1-36:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{zhang_et_al:LIPIcs.ECOOP.2025.36,
  author =	{Zhang, Guanqin and Fukuda, Kota and Zhang, Zhenya and Bandara, H.M.N. Dilum and Chen, Shiping and Zhao, Jianjun and Sui, Yulei},
  title =	{{Efficient Neural Network Verification via Order Leading Exploration of Branch-and-Bound Trees}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{36:1--36:29},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.36},
  URN =		{urn:nbn:de:0030-drops-233281},
  doi =		{10.4230/LIPIcs.ECOOP.2025.36},
  annote =	{Keywords: neural network verification, branch and bound, counterexample potentiality, simulated annealing, stochastic optimization}
}
Document
Survey
DOI: 10.4230/TGDK.3.1.3
Uncertainty Management in the Construction of Knowledge Graphs: A Survey

Authors: Lucas Jarnac, Yoan Chabot, and Miguel Couceiro

Published in: TGDK, Volume 3, Issue 1 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 1

Abstract
Knowledge Graphs (KGs) are a major asset for companies thanks to their great flexibility in data representation and their numerous applications, e.g., vocabulary sharing, Q&A or recommendation systems. To build a KG, it is a common practice to rely on automatic methods for extracting knowledge from various heterogeneous sources. However, in a noisy and uncertain world, knowledge may not be reliable and conflicts between data sources may occur. Integrating unreliable data would directly impact the use of the KG, therefore such conflicts must be resolved. This could be done manually by selecting the best data to integrate. This first approach is highly accurate, but costly and time-consuming. That is why recent efforts focus on automatic approaches, which represent a challenging task since it requires handling the uncertainty of extracted knowledge throughout its integration into the KG. We survey state-of-the-art approaches in this direction and present constructions of both open and enterprise KGs. We then describe different knowledge extraction methods and discuss downstream tasks after knowledge acquisition, including KG completion using embedding models, knowledge alignment, and knowledge fusion in order to address the problem of knowledge uncertainty in KG construction. We conclude with a discussion on the remaining challenges and perspectives when constructing a KG taking into account uncertainty.
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Lucas Jarnac, Yoan Chabot, and Miguel Couceiro. Uncertainty Management in the Construction of Knowledge Graphs: A Survey. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 1, pp. 3:1-3:48, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{jarnac_et_al:TGDK.3.1.3,
  author =	{Jarnac, Lucas and Chabot, Yoan and Couceiro, Miguel},
  title =	{{Uncertainty Management in the Construction of Knowledge Graphs: A Survey}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{3:1--3:48},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.1.3},
  URN =		{urn:nbn:de:0030-drops-233733},
  doi =		{10.4230/TGDK.3.1.3},
  annote =	{Keywords: Knowledge reconciliation, Uncertainty, Heterogeneous sources, Knowledge graph construction}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2025.96
Formulations and Constructions of Remote State Preparation with Verifiability, with Applications

Authors: Jiayu Zhang

Published in: LIPIcs, Volume 325, 16th Innovations in Theoretical Computer Science Conference (ITCS 2025)

Abstract
Remote state preparation with verifiability (RSPV) is an important quantum cryptographic primitive [Alexandru Gheorghiu and Thomas Vidick, 2019; Jiayu Zhang, 2022]. In this primitive, a client would like to prepare a quantum state (sampled or chosen from a state family) on the server side, such that ideally the client knows its full description, while the server holds and only holds the state itself. In this work we make several contributions on its formulations, constructions and applications. In more detail: - We first work on the definitions and abstract properties of the RSPV problem. We select and compare different variants of definitions [Bennett et al., 2001; Alexandru Gheorghiu and Thomas Vidick, 2019; Jiayu Zhang, 2022; Alexandru Gheorghiu et al., 2022], and study their basic properties (like composability and amplification). - We also study a closely related question of how to certify the server’s operations (instead of solely the states). We introduce a new notion named remote operator application with verifiability (ROAV). We compare this notion with related existing definitions [Summers and Werner, 1987; Dominic Mayers and Andrew Chi-Chih Yao, 2004; Zhengfeng Ji et al., 2021; Tony Metger and Thomas Vidick, 2021; Anand Natarajan and Tina Zhang, 2023], study its abstract properties and leave its concrete constructions for further works. - Building on the abstract properties and existing results [Zvika Brakerski et al., 2023], we construct a series of new RSPV protocols. Our constructions not only simplify existing results [Alexandru Gheorghiu and Thomas Vidick, 2019] but also cover new state families, for example, states in the form of 1/√2 (|0⟩ + |x_0⟩ + |1⟩ |x_1⟩). All these constructions rely only on the existence of weak NTCF [Zvika Brakerski et al., 2020; Navid Alamati et al., 2022], without additional requirements like the adaptive hardcore bit property [Zvika Brakerski et al., 2018; Navid Alamati et al., 2022]. - As a further application, we show that the classical verification of quantum computations (CVQC) problem [Dorit Aharonov et al., 2010; Urmila Mahadev, 2018] could be constructed from assumptions on group actions [Navid Alamati et al., 2020]. This is achieved by combining our results on RSPV with group-action-based instantiation of weak NTCF [Navid Alamati et al., 2022], and then with the quantum-gadget-assisted quantum verification protocol [Ferracin et al., 2018].
Cite as

Jiayu Zhang. Formulations and Constructions of Remote State Preparation with Verifiability, with Applications. In 16th Innovations in Theoretical Computer Science Conference (ITCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 325, pp. 96:1-96:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{zhang:LIPIcs.ITCS.2025.96,
  author =	{Zhang, Jiayu},
  title =	{{Formulations and Constructions of Remote State Preparation with Verifiability, with Applications}},
  booktitle =	{16th Innovations in Theoretical Computer Science Conference (ITCS 2025)},
  pages =	{96:1--96:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-361-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{325},
  editor =	{Meka, Raghu},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2025.96},
  URN =		{urn:nbn:de:0030-drops-227245},
  doi =		{10.4230/LIPIcs.ITCS.2025.96},
  annote =	{Keywords: Quantum Cryptography, Remote State Preparation, Self-testing, Verification of Quantum Computations}
}
Document
Resource Paper
DOI: 10.4230/TGDK.2.2.5
The Reasonable Ontology Templates Framework

Authors: Martin Georg Skjæveland and Leif Harald Karlsen

Published in: TGDK, Volume 2, Issue 2 (2024): Special Issue on Resources for Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 2, Issue 2

Abstract
Reasonable Ontology Templates (OTTR) is a templating language for representing and instantiating patterns. It is based on simple and generic, but powerful, mechanisms such as recursive macro expansion, term substitution and type systems, and is designed particularly for building and maintaining RDF knowledge graphs and OWL ontologies. In this resource paper, we present the formal specifications that define the OTTR framework. This includes the fundamentals of the OTTR language and the adaptions to make it fit with standard semantic web languages, and two serialization formats developed for semantic web practitioners. We also present the OTTR framework’s support for documenting, publishing and managing template libraries, and for tools for practical bulk instantiation of templates from tabular data and queryable data sources. The functionality of the OTTR framework is available for use through Lutra, an open-source reference implementation, and other independent implementations. We report on the use and impact of OTTR by presenting selected industrial use cases. Finally, we reflect on some design considerations of the language and framework and present ideas for future work.
Cite as

Martin Georg Skjæveland and Leif Harald Karlsen. The Reasonable Ontology Templates Framework. In Special Issue on Resources for Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 2, Issue 2, pp. 5:1-5:54, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@Article{skjaeveland_et_al:TGDK.2.2.5,
  author =	{Skj{\ae}veland, Martin Georg and Karlsen, Leif Harald},
  title =	{{The Reasonable Ontology Templates Framework}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{5:1--5:54},
  ISSN =	{2942-7517},
  year =	{2024},
  volume =	{2},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.2.2.5},
  URN =		{urn:nbn:de:0030-drops-225896},
  doi =		{10.4230/TGDK.2.2.5},
  annote =	{Keywords: Ontology engineering, Ontology design patterns, Template mechanism, Macros}
}
Document
Position
DOI: 10.4230/TGDK.1.1.5
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities

Authors: Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven, as they produce and consume vast amounts of scientific data, much of which is intrinsically relational and graph-structured. The volume of data and the complexity of scientific concepts and relations referred to therein promote the application of advanced knowledge-driven technologies for managing and interpreting data, with the ultimate aim to advance scientific discovery. In this survey and position paper, we discuss recent developments and advances in the use of graph-based technologies in life sciences and set out a vision for how these technologies will impact these fields into the future. We focus on three broad topics: the construction and management of Knowledge Graphs (KGs), the use of KGs and associated technologies in the discovery of new knowledge, and the use of KGs in artificial intelligence applications to support explanations (explainable AI). We select a few exemplary use cases for each topic, discuss the challenges and open research questions within these topics, and conclude with a perspective and outlook that summarizes the overarching challenges and their potential solutions as a guide for future research.
Cite as

Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma. Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 5:1-5:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{chen_et_al:TGDK.1.1.5,
  author =	{Chen, Jiaoyan and Dong, Hang and Hastings, Janna and Jim\'{e}nez-Ruiz, Ernesto and L\'{o}pez, Vanessa and Monnin, Pierre and Pesquita, Catia and \v{S}koda, Petr and Tamma, Valentina},
  title =	{{Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{5:1--5:33},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.5},
  URN =		{urn:nbn:de:0030-drops-194791},
  doi =		{10.4230/TGDK.1.1.5},
  annote =	{Keywords: Knowledge graphs, Life science, Knowledge discovery, Explainable AI}
}
Document
Position
DOI: 10.4230/TGDK.1.1.2
Large Language Models and Knowledge Graphs: Opportunities and Challenges

Authors: Jeff Z. Pan, Simon Razniewski, Jan-Christoph Kalo, Sneha Singhania, Jiaoyan Chen, Stefan Dietze, Hajira Jabeen, Janna Omeliyanenko, Wen Zhang, Matteo Lissandrini, Russa Biswas, Gerard de Melo, Angela Bonifati, Edlira Vakaj, Mauro Dragoni, and Damien Graux

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
Large Language Models (LLMs) have taken Knowledge Representation - and the world - by storm. This inflection point marks a shift from explicit knowledge representation to a renewed focus on the hybrid representation of both explicit knowledge and parametric knowledge. In this position paper, we will discuss some of the common debate points within the community on LLMs (parametric knowledge) and Knowledge Graphs (explicit knowledge) and speculate on opportunities and visions that the renewed focus brings, as well as related research topics and challenges.
Cite as

Jeff Z. Pan, Simon Razniewski, Jan-Christoph Kalo, Sneha Singhania, Jiaoyan Chen, Stefan Dietze, Hajira Jabeen, Janna Omeliyanenko, Wen Zhang, Matteo Lissandrini, Russa Biswas, Gerard de Melo, Angela Bonifati, Edlira Vakaj, Mauro Dragoni, and Damien Graux. Large Language Models and Knowledge Graphs: Opportunities and Challenges. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 2:1-2:38, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{pan_et_al:TGDK.1.1.2,
  author =	{Pan, Jeff Z. and Razniewski, Simon and Kalo, Jan-Christoph and Singhania, Sneha and Chen, Jiaoyan and Dietze, Stefan and Jabeen, Hajira and Omeliyanenko, Janna and Zhang, Wen and Lissandrini, Matteo and Biswas, Russa and de Melo, Gerard and Bonifati, Angela and Vakaj, Edlira and Dragoni, Mauro and Graux, Damien},
  title =	{{Large Language Models and Knowledge Graphs: Opportunities and Challenges}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{2:1--2:38},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.2},
  URN =		{urn:nbn:de:0030-drops-194766},
  doi =		{10.4230/TGDK.1.1.2},
  annote =	{Keywords: Large Language Models, Pre-trained Language Models, Knowledge Graphs, Ontology, Retrieval Augmented Language Models}
}
Document
Survey
DOI: 10.4230/TGDK.1.1.11
How Does Knowledge Evolve in Open Knowledge Graphs?

Authors: Axel Polleres, Romana Pernisch, Angela Bonifati, Daniele Dell'Aglio, Daniil Dobriy, Stefania Dumbrava, Lorena Etcheverry, Nicolas Ferranti, Katja Hose, Ernesto Jiménez-Ruiz, Matteo Lissandrini, Ansgar Scherp, Riccardo Tommasini, and Johannes Wachs

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
Openly available, collaboratively edited Knowledge Graphs (KGs) are key platforms for the collective management of evolving knowledge. The present work aims t o provide an analysis of the obstacles related to investigating and processing specifically this central aspect of evolution in KGs. To this end, we discuss (i) the dimensions of evolution in KGs, (ii) the observability of evolution in existing, open, collaboratively constructed Knowledge Graphs over time, and (iii) possible metrics to analyse this evolution. We provide an overview of relevant state-of-the-art research, ranging from metrics developed for Knowledge Graphs specifically to potential methods from related fields such as network science. Additionally, we discuss technical approaches - and their current limitations - related to storing, analysing and processing large and evolving KGs in terms of handling typical KG downstream tasks.
Cite as

Axel Polleres, Romana Pernisch, Angela Bonifati, Daniele Dell'Aglio, Daniil Dobriy, Stefania Dumbrava, Lorena Etcheverry, Nicolas Ferranti, Katja Hose, Ernesto Jiménez-Ruiz, Matteo Lissandrini, Ansgar Scherp, Riccardo Tommasini, and Johannes Wachs. How Does Knowledge Evolve in Open Knowledge Graphs?. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 11:1-11:59, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{polleres_et_al:TGDK.1.1.11,
  author =	{Polleres, Axel and Pernisch, Romana and Bonifati, Angela and Dell'Aglio, Daniele and Dobriy, Daniil and Dumbrava, Stefania and Etcheverry, Lorena and Ferranti, Nicolas and Hose, Katja and Jim\'{e}nez-Ruiz, Ernesto and Lissandrini, Matteo and Scherp, Ansgar and Tommasini, Riccardo and Wachs, Johannes},
  title =	{{How Does Knowledge Evolve in Open Knowledge Graphs?}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{11:1--11:59},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.11},
  URN =		{urn:nbn:de:0030-drops-194855},
  doi =		{10.4230/TGDK.1.1.11},
  annote =	{Keywords: KG evolution, temporal KG, versioned KG, dynamic KG}
}
Document
Vision
DOI: 10.4230/TGDK.1.1.8
Machine Learning and Knowledge Graphs: Existing Gaps and Future Research Challenges

Authors: Claudia d'Amato, Louis Mahon, Pierre Monnin, and Giorgos Stamou

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
The graph model is nowadays largely adopted to model a wide range of knowledge and data, spanning from social networks to knowledge graphs (KGs), representing a successful paradigm of how symbolic and transparent AI can scale on the World Wide Web. However, due to their unprecedented volume, they are generally tackled by Machine Learning (ML) and mostly numeric based methods such as graph embedding models (KGE) and deep neural networks (DNNs). The latter methods have been proved lately very efficient, leading the current AI spring. In this vision paper, we introduce some of the main existing methods for combining KGs and ML, divided into two categories: those using ML to improve KGs, and those using KGs to improve results on ML tasks. From this introduction, we highlight research gaps and perspectives that we deem promising and currently under-explored for the involved research communities, spanning from KG support for LLM prompting, integration of KG semantics in ML models to symbol-based methods, interpretability of ML models, and the need for improved benchmark datasets. In our opinion, such perspectives are stepping stones in an ultimate view of KGs as central assets for neuro-symbolic and explainable AI.
Cite as

Claudia d'Amato, Louis Mahon, Pierre Monnin, and Giorgos Stamou. Machine Learning and Knowledge Graphs: Existing Gaps and Future Research Challenges. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 8:1-8:35, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{damato_et_al:TGDK.1.1.8,
  author =	{d'Amato, Claudia and Mahon, Louis and Monnin, Pierre and Stamou, Giorgos},
  title =	{{Machine Learning and Knowledge Graphs: Existing Gaps and Future Research Challenges}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{8:1--8:35},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.8},
  URN =		{urn:nbn:de:0030-drops-194824},
  doi =		{10.4230/TGDK.1.1.8},
  annote =	{Keywords: Graph-based Learning, Knowledge Graph Embeddings, Large Language Models, Explainable AI, Knowledge Graph Completion \& Curation}
}
Document
Survey
DOI: 10.4230/TGDK.1.1.4
Knowledge Graph Embeddings: Open Challenges and Opportunities

Authors: Russa Biswas, Lucie-Aimée Kaffee, Michael Cochez, Stefania Dumbrava, Theis E. Jendal, Matteo Lissandrini, Vanessa Lopez, Eneldo Loza Mencía, Heiko Paulheim, Harald Sack, Edlira Kalemi Vakaj, and Gerard de Melo

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
While Knowledge Graphs (KGs) have long been used as valuable sources of structured knowledge, in recent years, KG embeddings have become a popular way of deriving numeric vector representations from them, for instance, to support knowledge graph completion and similarity search. This study surveys advances as well as open challenges and opportunities in this area. For instance, the most prominent embedding models focus primarily on structural information. However, there has been notable progress in incorporating further aspects, such as semantics, multi-modal, temporal, and multilingual features. Most embedding techniques are assessed using human-curated benchmark datasets for the task of link prediction, neglecting other important real-world KG applications. Many approaches assume a static knowledge graph and are unable to account for dynamic changes. Additionally, KG embeddings may encode data biases and lack interpretability. Overall, this study provides an overview of promising research avenues to learn improved KG embeddings that can address a more diverse range of use cases.
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Russa Biswas, Lucie-Aimée Kaffee, Michael Cochez, Stefania Dumbrava, Theis E. Jendal, Matteo Lissandrini, Vanessa Lopez, Eneldo Loza Mencía, Heiko Paulheim, Harald Sack, Edlira Kalemi Vakaj, and Gerard de Melo. Knowledge Graph Embeddings: Open Challenges and Opportunities. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 4:1-4:32, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{biswas_et_al:TGDK.1.1.4,
  author =	{Biswas, Russa and Kaffee, Lucie-Aim\'{e}e and Cochez, Michael and Dumbrava, Stefania and Jendal, Theis E. and Lissandrini, Matteo and Lopez, Vanessa and Menc{\'\i}a, Eneldo Loza and Paulheim, Heiko and Sack, Harald and Vakaj, Edlira Kalemi and de Melo, Gerard},
  title =	{{Knowledge Graph Embeddings: Open Challenges and Opportunities}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{4:1--4:32},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.4},
  URN =		{urn:nbn:de:0030-drops-194783},
  doi =		{10.4230/TGDK.1.1.4},
  annote =	{Keywords: Knowledge Graphs, KG embeddings, Link prediction, KG applications}
}
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