30 Search Results for "Rizzi, Romeo"


Document
An Optimal Algorithm for the Stacker Crane Problem on Fixed Topologies

Authors: Yike Chen, Ke Shi, and Chao Xu

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)


Abstract
The Stacker Crane Problem (SCP) is a variant of the Traveling Salesman Problem. In SCP, pairs of pickup and delivery points are designated on a graph, and a crane must visit these points to move objects from each pickup location to its respective delivery point. The goal is to minimize the total distance traveled. SCP is known to be NP-hard, even on trees. The only positive results, in terms of polynomial-time solvability, apply to graphs that are topologically equivalent to a path or a cycle. We propose an algorithm that is optimal for each fixed topology, running in near-linear time. This is achieved by demonstrating that the problem is fixed-parameter tractable (FPT) when parameterized by both the cycle rank and the number of branch vertices.

Cite as

Yike Chen, Ke Shi, and Chao Xu. An Optimal Algorithm for the Stacker Crane Problem on Fixed Topologies. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 18:1-18:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{chen_et_al:LIPIcs.ISAAC.2025.18,
  author =	{Chen, Yike and Shi, Ke and Xu, Chao},
  title =	{{An Optimal Algorithm for the Stacker Crane Problem on Fixed Topologies}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{18:1--18:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.18},
  URN =		{urn:nbn:de:0030-drops-249269},
  doi =		{10.4230/LIPIcs.ISAAC.2025.18},
  annote =	{Keywords: Stacker Crane Problem, Fixed-Parameter Tractable, Min-Cost Circulation}
}
Document
Towards Optimal Distributed Edge Coloring with Fewer Colors

Authors: Manuel Jakob, Yannic Maus, and Florian Schager

Published in: LIPIcs, Volume 356, 39th International Symposium on Distributed Computing (DISC 2025)


Abstract
There is a huge difference in techniques and runtimes of distributed algorithms for problems that can be solved by a sequential greedy algorithm and those that cannot. A prime example of this contrast appears in the edge coloring problem: while (2Δ-1)-edge coloring - where Δ is the maximum degree - can be solved in 𝒪(log^{∗}(n)) rounds on constant-degree graphs, the seemingly minor reduction to (2Δ-2) colors leads to an Ω(log n) lower bound [Chang, He, Li, Pettie & Uitto, SODA'18]. Understanding this sharp divide between very local problems and inherently more global ones remains a central open question in distributed computing and it is a core focus of this paper. As our main contribution we design a deterministic distributed 𝒪(log n)-round reduction from the (2Δ-2)-edge coloring problem to the much easier (2Δ-1)-edge coloring problem. This reduction is optimal, as the (2Δ-2)-edge coloring problem admits an Ω(log n) lower bound that even holds on the class of constant-degree graphs, whereas the 2Δ-1-edge coloring problem can be solved in 𝒪(log^{∗}n) rounds. By plugging in the (2Δ-1)-edge coloring algorithms from [Balliu, Brandt, Kuhn & Olivetti, PODC'22] running in 𝒪(log^{12}Δ + log^{∗} n) rounds, we obtain an optimal runtime of 𝒪(log n) rounds as long as Δ = 2^{𝒪(log^{1/12} n)}. Previously, such an optimal algorithm was only known for the class of constant-degree graphs [Brandt, Maus, Narayanan, Schager & Uitto, SODA'25]. Furthermore, on general graphs our reduction improves the runtime from 𝒪̃(log³ n) to 𝒪̃(log^{5/3} n). In addition, we also obtain an optimal 𝒪(log log n)-round randomized reduction of (2Δ - 2)-edge coloring to (2Δ - 1)-edge coloring. This leads to a 𝒪̃(log^{5/3} log n)-round (2Δ-2)-edge coloring algorithm, which beats the (very recent) previous state-of-the-art taking 𝒪̃(log^{8/3}log n) rounds from [Bourreau, Brandt & Nolin, STOC'25]. Lastly, we obtain an 𝒪(log_Δ n)-round reduction from the (2Δ-1)-edge coloring, albeit to the somewhat harder maximal independent set (MIS) problem.

Cite as

Manuel Jakob, Yannic Maus, and Florian Schager. Towards Optimal Distributed Edge Coloring with Fewer Colors. In 39th International Symposium on Distributed Computing (DISC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 356, pp. 37:1-37:26, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{jakob_et_al:LIPIcs.DISC.2025.37,
  author =	{Jakob, Manuel and Maus, Yannic and Schager, Florian},
  title =	{{Towards Optimal Distributed Edge Coloring with Fewer Colors}},
  booktitle =	{39th International Symposium on Distributed Computing (DISC 2025)},
  pages =	{37:1--37:26},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-402-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{356},
  editor =	{Kowalski, Dariusz R.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DISC.2025.37},
  URN =		{urn:nbn:de:0030-drops-248547},
  doi =		{10.4230/LIPIcs.DISC.2025.37},
  annote =	{Keywords: distributed graph algorithms, edge coloring, LOCAL model}
}
Document
A Better Algorithm for Converting an STNU into Minimal Dispatchable Form

Authors: Luke Hunsberger and Roberto Posenato

Published in: LIPIcs, Volume 355, 32nd International Symposium on Temporal Representation and Reasoning (TIME 2025)


Abstract
A Simple Temporal Network with Uncertainty (STNU) is a data structure for representing and reasoning about temporal constraints on activities, including those with uncertain durations. An STNU is dispatchable if it can be flexibly and efficiently executed in real time while guaranteeing that all relevant constraints are satisfied. Typically, dispatchability requires inserting conditional wait constraints, thereby forming an Extended STNU (ESTNU). The number of edges in an ESTNU affects the computational work that must be done during real-time execution. The MinDispESTNU problem is that of finding an equivalent dispatchable ESTNU having a minimal number of edges. Recent work presented an O(kn³)-time algorithm for solving the MinDispESTNU problem, where n is the number of timepoints and k is the number of actions with uncertain durations. A subsequent paper presented a faster O(n³)-time algorithm, but it has been shown to be incomplete. This paper presents a new O(mn+n²k+n²log n)-time algorithm for solving the MinDispESTNU problem, where m is the number of constraints in the network. The correctness of the algorithm is based on a novel theory of the canonical form of nested diamond structures. An empirical evaluation demonstrates the order-of-magnitude improvement in performance.

Cite as

Luke Hunsberger and Roberto Posenato. A Better Algorithm for Converting an STNU into Minimal Dispatchable Form. In 32nd International Symposium on Temporal Representation and Reasoning (TIME 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 355, pp. 11:1-11:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{hunsberger_et_al:LIPIcs.TIME.2025.11,
  author =	{Hunsberger, Luke and Posenato, Roberto},
  title =	{{A Better Algorithm for Converting an STNU into Minimal Dispatchable Form}},
  booktitle =	{32nd International Symposium on Temporal Representation and Reasoning (TIME 2025)},
  pages =	{11:1--11:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-401-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{355},
  editor =	{Vidal, Thierry and Wa{\l}\k{e}ga, Przemys{\l}aw Andrzej},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.TIME.2025.11},
  URN =		{urn:nbn:de:0030-drops-244578},
  doi =		{10.4230/LIPIcs.TIME.2025.11},
  annote =	{Keywords: Temporal constraint networks, dispatchable networks}
}
Document
Testing Sumsets Is Hard

Authors: Xi Chen, Shivam Nadimpalli, Tim Randolph, Rocco A. Servedio, and Or Zamir

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)


Abstract
A subset S of the Boolean hypercube 𝔽₂ⁿ is a sumset if S = {a + b : a, b ∈ A} for some A ⊆ 𝔽₂ⁿ. Sumsets are central objects of study in additive combinatorics, where they play a role in several of the field’s most important results. We prove a lower bound of Ω(2^{n/2}) for the number of queries needed to test whether a Boolean function f:𝔽₂ⁿ → {0,1} is the indicator function of a sumset, ruling out an efficient testing algorithm for sumsets. Our lower bound for testing sumsets follows from sharp bounds on the related problem of shift testing, which may be of independent interest. We also give a near-optimal {2^{n/2} ⋅ poly(n)}-query algorithm for a smoothed analysis formulation of the sumset refutation problem. Finally, we include a simple proof that the number of different sumsets in 𝔽₂ⁿ is 2^{(1±o(1))2^{n-1}}.

Cite as

Xi Chen, Shivam Nadimpalli, Tim Randolph, Rocco A. Servedio, and Or Zamir. Testing Sumsets Is Hard. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 14:1-14:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{chen_et_al:LIPIcs.ESA.2025.14,
  author =	{Chen, Xi and Nadimpalli, Shivam and Randolph, Tim and Servedio, Rocco A. and Zamir, Or},
  title =	{{Testing Sumsets Is Hard}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{14:1--14:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.14},
  URN =		{urn:nbn:de:0030-drops-244822},
  doi =		{10.4230/LIPIcs.ESA.2025.14},
  annote =	{Keywords: Sumsets, additive combinatorics, property testing, Boolean functions}
}
Document
Safe Sequences via Dominators in DAGs for Path-Covering Problems

Authors: Francisco Sena, Romeo Rizzi, and Alexandru I. Tomescu

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)


Abstract
A path-covering problem on a directed acyclic graph (DAG) requires finding a set of source-to-sink paths that cover all the nodes, all the arcs, or subsets thereof, and additionally they are optimal with respect to some function. In this paper we study safe sequences of nodes or arcs, namely sequences that appear in some path of every path cover of a DAG. We show that safe sequences admit a simple characterization via cutnodes. Moreover, we establish a connection between maximal safe sequences and leaf-to-root paths in the source- and sink-dominator trees of the DAG, which may be of independent interest in the extensive literature on dominators. With dominator trees, safe sequences admit an O(n)-size representation and a linear-time output-sensitive enumeration algorithm running in time O(m + o), where n and m are the number of nodes and arcs, respectively, and o is the total length of the maximal safe sequences. We then apply maximal safe sequences to simplify Integer Linear Programs (ILPs) for two path-covering problems, LeastSquares and MinPathError, which are at the core of RNA transcript assembly problems from bioinformatics. On various datasets, maximal safe sequences can be computed in under 0.1 seconds per graph, on average, and ILP solvers whose search space is reduced in this manner exhibit significant speed-ups. For example on graphs with a large width, average speed-ups are in the range 50-250× for MinPathError and in the range 80-350× for LeastSquares. Optimizing ILPs using safe sequences can thus become a fast building block of practical RNA transcript assembly tools, and more generally, of path-covering problems.

Cite as

Francisco Sena, Romeo Rizzi, and Alexandru I. Tomescu. Safe Sequences via Dominators in DAGs for Path-Covering Problems. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 55:1-55:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{sena_et_al:LIPIcs.ESA.2025.55,
  author =	{Sena, Francisco and Rizzi, Romeo and Tomescu, Alexandru I.},
  title =	{{Safe Sequences via Dominators in DAGs for Path-Covering Problems}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{55:1--55:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.55},
  URN =		{urn:nbn:de:0030-drops-245230},
  doi =		{10.4230/LIPIcs.ESA.2025.55},
  annote =	{Keywords: directed acyclic graph, path cover, dominator tree, integer linear programming, least squares, minimum path error}
}
Document
RANDOM
On the Spectral Expansion of Monotone Subsets of the Hypercube

Authors: Yumou Fei and Renato Ferreira Pinto Jr.

Published in: LIPIcs, Volume 353, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)


Abstract
We study the spectral gap of subgraphs of the hypercube induced by monotone subsets of vertices. For a monotone subset A ⊆ {0,1}ⁿ of density μ(A), the previous best lower bound on the spectral gap, due to Cohen [Cohen, 2016], was γ ≳ μ(A)/n², improving upon the earlier bound γ ≳ μ(A)²/n² established by Ding and Mossel [Ding and Mossel, 2014]. In this paper, we prove the optimal lower bound γ ≳ μ(A)/n. As a corollary, we improve the mixing time upper bound of the random walk on constant-density monotone sets from O(n³), as shown by Ding and Mossel, to O(n²). Along the way, we develop two new inequalities that may be of independent interest: (1) a directed L²-Poincaré inequality on the hypercube, and (2) an "approximate" FKG inequality for monotone sets.

Cite as

Yumou Fei and Renato Ferreira Pinto Jr.. On the Spectral Expansion of Monotone Subsets of the Hypercube. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 353, pp. 42:1-42:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{fei_et_al:LIPIcs.APPROX/RANDOM.2025.42,
  author =	{Fei, Yumou and Ferreira Pinto Jr., Renato},
  title =	{{On the Spectral Expansion of Monotone Subsets of the Hypercube}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)},
  pages =	{42:1--42:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-397-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{353},
  editor =	{Ene, Alina and Chattopadhyay, Eshan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2025.42},
  URN =		{urn:nbn:de:0030-drops-244081},
  doi =		{10.4230/LIPIcs.APPROX/RANDOM.2025.42},
  annote =	{Keywords: Random walks, mixing time, FKG inequality, Poincar\'{e} inequality, directed isoperimetry}
}
Document
Shortest Paths in Multimode Graphs

Authors: Yael Kirkpatrick and Virginia Vassilevska Williams

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)


Abstract
In this work we study shortest path problems in multimode graphs, a generalization of the min-distance measure introduced by Abboud, Vassilevska W. and Wang in [SODA'16]. A multimode shortest path is the shortest path using one of multiple "modes" of transportation that cannot be combined. This represents real-world scenarios where different modes are not combinable, such as flights operated by different airline alliances. The problem arises naturally in machine learning in the context of learning with multiple embedding. More precisely, a k-multimode graph is a collection of k graphs on the same vertex set and the k-mode distance between two vertices is defined as the minimum among the distances computed in each individual graph. We focus on approximating fundamental graph parameters on these graphs, specifically diameter and radius. In undirected multimode graphs we first show an elegant linear time 3-approximation algorithm for 2-mode diameter. We then extend this idea into a general subroutine that can be used as a part of any α-approximation, and use it to construct a 2 and 2.5 approximation algorithm for 2-mode diameter. For undirected radius, we introduce a general scheme that can compute a 3-approximation of the k-mode radius for any k and runs in near linear time in the case of k = O(1). In the directed case we establish an equivalence between approximating 2-mode diameter on DAGs and approximating the min-diameter, while for general graphs we develop novel techniques and provide a linear time algorithm to determine whether the diameter is finite. We also develop many conditional fine-grained lower bounds for various multimode diameter and radius approximation problems. We are able to show that many of our algorithms are tight under popular fine-grained complexity hypotheses, including our linear time 3-approximation for 3-mode undirected diameter and radius. As part of this effort we propose the first extension to the Hitting Set Hypothesis [SODA'16], which we call the 𝓁-Hitting Set Hypothesis. We use this hypothesis to prove the first parameterized lower bound tradeoff for radius approximation algorithms.

Cite as

Yael Kirkpatrick and Virginia Vassilevska Williams. Shortest Paths in Multimode Graphs. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 63:1-63:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{kirkpatrick_et_al:LIPIcs.MFCS.2025.63,
  author =	{Kirkpatrick, Yael and Vassilevska Williams, Virginia},
  title =	{{Shortest Paths in Multimode Graphs}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{63:1--63:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.63},
  URN =		{urn:nbn:de:0030-drops-241703},
  doi =		{10.4230/LIPIcs.MFCS.2025.63},
  annote =	{Keywords: Graph Algorithms, Shortest Paths, Diameter, Radius, Fine-Grained Complexity}
}
Document
Education
Turing Arena Light: Enhancing Programming Education Through Competitive Environments

Authors: Giorgio Audrito, Luigi Laura, Alessio Orlandi, Dario Ostuni, Romeo Rizzi, and Luca Versari

Published in: OASIcs, Volume 132, From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday (2025)


Abstract
Turing Arena light, the spiritual successor of Turing Arena, is a contest management system that is designed to be more geared towards the needs of classroom teaching, rather than competitive programming contests. It strives to be as simple as possible, while being very flexible and extensible. The fundamental idea behind Turing Arena light is to have two programs that talk to each other through the standard input and output channels. One of the two programs is the problem manager, which is a program that interacts with a solution to give it the input and evaluate its output, and eventually give a verdict. The other program is the solution, which is the program written by the contestant that is meant to solve the problem. In this paper we describe the architecture and the design of Turing Arena light.

Cite as

Giorgio Audrito, Luigi Laura, Alessio Orlandi, Dario Ostuni, Romeo Rizzi, and Luca Versari. Turing Arena Light: Enhancing Programming Education Through Competitive Environments. In From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 132, pp. 11:1-11:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{audrito_et_al:OASIcs.Grossi.11,
  author =	{Audrito, Giorgio and Laura, Luigi and Orlandi, Alessio and Ostuni, Dario and Rizzi, Romeo and Versari, Luca},
  title =	{{Turing Arena Light: Enhancing Programming Education Through Competitive Environments}},
  booktitle =	{From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday},
  pages =	{11:1--11:14},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-391-1},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{132},
  editor =	{Conte, Alessio and Marino, Andrea and Rosone, Giovanna and Vitter, Jeffrey Scott},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Grossi.11},
  URN =		{urn:nbn:de:0030-drops-238108},
  doi =		{10.4230/OASIcs.Grossi.11},
  annote =	{Keywords: Competitive Programming, Contest Management Systems, Online Judges}
}
Document
Research
Designing Output Sensitive Algorithms for Subgraph Enumeration

Authors: Alessio Conte, Kazuhiro Kurita, Andrea Marino, Giulia Punzi, Takeaki Uno, and Kunihiro Wasa

Published in: OASIcs, Volume 132, From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday (2025)


Abstract
The enumeration of all subgraphs respecting some structural property is a fundamental task in theoretical computer science, with practical applications in many branches of data mining and network analysis. It is often of interest to only consider solutions (subgraphs) that are maximal under inclusion, and to achieve output-sensitive complexity, i.e., bounding the running time with respect to the number of subgraphs produced. In this paper, we provide a survey of techniques for designing output-sensitive algorithms for subgraph enumeration, including partition-based approaches such as flashlight search, solution-graph traversal methods such as reverse search, and cost amortization strategies such as push-out amortization. We also briefly discuss classes of efficiency, hardness of enumeration, and variants such as approximate enumeration. The paper is meant as an accessible handbook for learning the basics of the field and as a practical reference for selecting state-of-the-art subgraph enumeration strategies fitting to one’s needs.

Cite as

Alessio Conte, Kazuhiro Kurita, Andrea Marino, Giulia Punzi, Takeaki Uno, and Kunihiro Wasa. Designing Output Sensitive Algorithms for Subgraph Enumeration. In From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 132, pp. 19:1-19:40, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{conte_et_al:OASIcs.Grossi.19,
  author =	{Conte, Alessio and Kurita, Kazuhiro and Marino, Andrea and Punzi, Giulia and Uno, Takeaki and Wasa, Kunihiro},
  title =	{{Designing Output Sensitive Algorithms for Subgraph Enumeration}},
  booktitle =	{From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday},
  pages =	{19:1--19:40},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-391-1},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{132},
  editor =	{Conte, Alessio and Marino, Andrea and Rosone, Giovanna and Vitter, Jeffrey Scott},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Grossi.19},
  URN =		{urn:nbn:de:0030-drops-238180},
  doi =		{10.4230/OASIcs.Grossi.19},
  annote =	{Keywords: Graph algorithms, Graph enumeration, Output sensitive enumeration}
}
Document
A Survey of the Bijective Burrows-Wheeler Transform

Authors: Hideo Bannai, Dominik Köppl, and Zsuzsanna Lipták

Published in: OASIcs, Volume 131, The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday (2025)


Abstract
The Bijective BWT (BBWT), conceived by Scott in 2007, later summarized in a preprint by Gil and Scott in 2009 (arXiv 2012), is a variant of the Burrows-Wheeler Transform which is bijective: every string is the BBWT of some string. Indeed, the BBWT of a string is the extended BWT [Mantaci et al., 2007] of the factors of its Lyndon factorization. The BBWT has been receiving increasing interest in recent years. In this paper, we survey existing research on the BBWT, starting with its history and motivation. We then present algorithmic topics including construction algorithms with various complexities and an index on top of the BBWT for pattern matching. We subsequently address some properties of the BBWT as a compressor, discussing robustness to operations such as reversal, edits, rotation, as well as compression power. We close with listing other bijective variants of the BWT and open problems concerning the BBWT.

Cite as

Hideo Bannai, Dominik Köppl, and Zsuzsanna Lipták. A Survey of the Bijective Burrows-Wheeler Transform. In The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 131, pp. 2:1-2:26, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{bannai_et_al:OASIcs.Manzini.2,
  author =	{Bannai, Hideo and K\"{o}ppl, Dominik and Lipt\'{a}k, Zsuzsanna},
  title =	{{A Survey of the Bijective Burrows-Wheeler Transform}},
  booktitle =	{The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday},
  pages =	{2:1--2:26},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-390-4},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{131},
  editor =	{Ferragina, Paolo and Gagie, Travis and Navarro, Gonzalo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Manzini.2},
  URN =		{urn:nbn:de:0030-drops-239100},
  doi =		{10.4230/OASIcs.Manzini.2},
  annote =	{Keywords: Burrows-Wheeler Transform, compression, text indexing, repetitiveness measure, Lyndon words, index construction algorithms, bijective string transformation}
}
Document
Polymorphic Cycle Basis in a Sequence of Graphs to Analyze the Structural Evolution of a Molecular Dynamic Trajectory

Authors: Ylène Aboulfath, Dominique Barth, Thierry Mautor, Dimitri Watel, and Marc-Antoine Weisser

Published in: LIPIcs, Volume 338, 23rd International Symposium on Experimental Algorithms (SEA 2025)


Abstract
Molecular dynamics analysis is a fundamental topic in chemistry, in particular the study of the formation and dissolution of hydrogen bonds over time. The dynamics of these bonds create and break cycles which are crucial to the structure of the molecules. The challenge in cycle analysis is twofold: there is an exponential number of cycles, and some cycles are very close. We introduce a graph-based approach using minimum cycle bases to assist in molecular dynamics analysis. Given a set of graphs representing a molecule trajectory, we determine, for each graph, a minimum cycle basis and construct a graph of cycles which represents the cycles of minimum bases and their interactions. Then, we aggregate all information from these graphs of cycles into a polygraph. Each vertex of the polygraph represents a class of cycles appearing in different minimum bases and playing equivalent roles in the trajectory. This paper introduces our approach, establishes the complexity of associated problems, and suggests an implementation. Simulations are conducted on both real and generated data to evaluate the performance of our approach.

Cite as

Ylène Aboulfath, Dominique Barth, Thierry Mautor, Dimitri Watel, and Marc-Antoine Weisser. Polymorphic Cycle Basis in a Sequence of Graphs to Analyze the Structural Evolution of a Molecular Dynamic Trajectory. In 23rd International Symposium on Experimental Algorithms (SEA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 338, pp. 1:1-1:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{aboulfath_et_al:LIPIcs.SEA.2025.1,
  author =	{Aboulfath, Yl\`{e}ne and Barth, Dominique and Mautor, Thierry and Watel, Dimitri and Weisser, Marc-Antoine},
  title =	{{Polymorphic Cycle Basis in a Sequence of Graphs to Analyze the Structural Evolution of a Molecular Dynamic Trajectory}},
  booktitle =	{23rd International Symposium on Experimental Algorithms (SEA 2025)},
  pages =	{1:1--1:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-375-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{338},
  editor =	{Mutzel, Petra and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2025.1},
  URN =		{urn:nbn:de:0030-drops-232399},
  doi =		{10.4230/LIPIcs.SEA.2025.1},
  annote =	{Keywords: Graph theory, Cycle basis, Molecular analysis}
}
Document
Track A: Algorithms, Complexity and Games
Improved Streaming Edge Coloring

Authors: Shiri Chechik, Hongyi Chen, and Tianyi Zhang

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)


Abstract
Given a graph, an edge coloring assigns colors to edges so that no pairs of adjacent edges share the same color. We are interested in edge coloring algorithms under the W-streaming model. In this model, the algorithm does not have enough memory to hold the entire graph, so the edges of the input graph are read from a data stream one by one in an unknown order, and the algorithm needs to print a valid edge coloring in an output stream. The performance of the algorithm is measured by the amount of space and the number of different colors it uses. This streaming edge coloring problem has been studied by several works in recent years. When the input graph contains n vertices and has maximum vertex degree Δ, it is known that in the W-streaming model, an O(Δ²)-edge coloring can be computed deterministically with Õ(n) space [Ansari, Saneian, and Zarrabi-Zadeh, 2022], or an O(Δ^{1.5})-edge coloring can be computed by a Õ(n)-space randomized algorithm [Behnezhad, Saneian, 2024] [Chechik, Mukhtar, Zhang, 2024]. In this paper, we achieve polynomial improvement over previous results. Specifically, we show how to improve the number of colors to Õ(Δ^{4/3+ε}) using space Õ(n) deterministically, for any constant ε > 0. This is the first deterministic result that bypasses the quadratic bound on the number of colors while using near-linear space.

Cite as

Shiri Chechik, Hongyi Chen, and Tianyi Zhang. Improved Streaming Edge Coloring. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 48:1-48:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{chechik_et_al:LIPIcs.ICALP.2025.48,
  author =	{Chechik, Shiri and Chen, Hongyi and Zhang, Tianyi},
  title =	{{Improved Streaming Edge Coloring}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{48:1--48:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.48},
  URN =		{urn:nbn:de:0030-drops-234257},
  doi =		{10.4230/LIPIcs.ICALP.2025.48},
  annote =	{Keywords: edge coloring, streaming}
}
Document
Shortest Undirected Paths in de Bruijn Graphs

Authors: Wiktor Zuba, Oded Lachish, and Solon P. Pissis

Published in: LIPIcs, Volume 331, 36th Annual Symposium on Combinatorial Pattern Matching (CPM 2025)


Abstract
Computing shortest directed paths in de Bruijn graphs is well studied and well understood. This is not the case for computing undirected paths, which is much more challenging algorithmically. In this paper, we present a general framework for computing shortest undirected paths in arbitrary de Bruijn graphs, that is, arbitrary subgraphs of the complete de Bruijn graph. We then present an application of our techniques for making any arbitrary order-k de Bruijn graph G(V,E) weakly connected by adding a set of edges of minimum total cost. This improves the running time of the recent (2-2/d)-approximation algorithm by Bernardini et al. [CPM 2024] from 𝒪(k|V|²) to 𝒪(k|V|log d) time, where d is the number of weakly connected components of graph G.

Cite as

Wiktor Zuba, Oded Lachish, and Solon P. Pissis. Shortest Undirected Paths in de Bruijn Graphs. In 36th Annual Symposium on Combinatorial Pattern Matching (CPM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 331, pp. 12:1-12:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{zuba_et_al:LIPIcs.CPM.2025.12,
  author =	{Zuba, Wiktor and Lachish, Oded and Pissis, Solon P.},
  title =	{{Shortest Undirected Paths in de Bruijn Graphs}},
  booktitle =	{36th Annual Symposium on Combinatorial Pattern Matching (CPM 2025)},
  pages =	{12:1--12:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-369-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{331},
  editor =	{Bonizzoni, Paola and M\"{a}kinen, Veli},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2025.12},
  URN =		{urn:nbn:de:0030-drops-231060},
  doi =		{10.4230/LIPIcs.CPM.2025.12},
  annote =	{Keywords: string algorithm, graph algorithm, de Bruijn graph, Eulerian graph}
}
Document
Self-Stabilizing Fully Adaptive Maximal Matching

Authors: Shimon Bitton, Yuval Emek, Taisuke Izumi, and Shay Kutten

Published in: LIPIcs, Volume 324, 28th International Conference on Principles of Distributed Systems (OPODIS 2024)


Abstract
A self-stabilizing randomized algorithm for mending maximal matching (MM) in synchronous networks is presented. Starting from a legal MM configuration and assuming that the network undergoes k faults or topology changes (that may occur in multiple batches), the algorithm is guaranteed to stabilize back to a legal MM configuration in time O(log k) in expectation and with high probability (in k), using constant size messages. The algorithm is simple to implement and is uniform in the sense that it does not assume unique identifiers, nor does it assume any global knowledge of the communication graph including its size. It relies on a generic probabilistic phase synchronization technique that may be useful for other self-stabilizing problems. The algorithm compares favorably with the existing self-stabilizing MM algorithms in terms of the dependence of its run-time on k, a.k.a. fully adaptive run-time. In fact, this dependence is asymptotically optimal for uniform algorithms that use constant size messages.

Cite as

Shimon Bitton, Yuval Emek, Taisuke Izumi, and Shay Kutten. Self-Stabilizing Fully Adaptive Maximal Matching. In 28th International Conference on Principles of Distributed Systems (OPODIS 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 324, pp. 33:1-33:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)


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@InProceedings{bitton_et_al:LIPIcs.OPODIS.2024.33,
  author =	{Bitton, Shimon and Emek, Yuval and Izumi, Taisuke and Kutten, Shay},
  title =	{{Self-Stabilizing Fully Adaptive Maximal Matching}},
  booktitle =	{28th International Conference on Principles of Distributed Systems (OPODIS 2024)},
  pages =	{33:1--33:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-360-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{324},
  editor =	{Bonomi, Silvia and Galletta, Letterio and Rivi\`{e}re, Etienne and Schiavoni, Valerio},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.OPODIS.2024.33},
  URN =		{urn:nbn:de:0030-drops-225698},
  doi =		{10.4230/LIPIcs.OPODIS.2024.33},
  annote =	{Keywords: self-stabilization, maximal matching, fully adaptive run-time, dynamic graphs}
}
Artifact
Software
Unit 2-interval graph checker

Authors: Abdallah Saffidine


Abstract

Cite as

Abdallah Saffidine. Unit 2-interval graph checker (Software, Source Code). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)


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@misc{dagstuhl-artifact-22474,
   title = {{Unit 2-interval graph checker}}, 
   author = {Saffidine, Abdallah},
   note = {Software, swhId: \href{https://archive.softwareheritage.org/swh:1:dir:3d7b6495d1f70618a537cd23c94530c23c030215;origin=https://github.com/AbdallahS/unit-graphs;visit=swh:1:snp:84b7b457760a919cc007e2290179e1fc6fe861e3;anchor=swh:1:rev:516ab210d2ff334ac34348619bc42d252824cac4}{\texttt{swh:1:dir:3d7b6495d1f70618a537cd23c94530c23c030215}} (visited on 2024-11-28)},
   url = {https://github.com/AbdallahS/unit-graphs},
   doi = {10.4230/artifacts.22474},
}
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