31 Search Results for "Uno, Takeaki"

Document
DOI: 10.4230/LIPIcs.SEA.2026.14
K-Hole Separation in PEO‑Based ILP Treewidth Formulation

Authors: Andrea D'Ascenzo

Published in: LIPIcs, Volume 371, 24th International Symposium on Experimental Algorithms (SEA 2026)

Abstract
In this paper, we introduce a family of valid inequalities for the strongest currently known integer programming formulation of treewidth based on perfect elimination orderings. These inequalities arise from the structure of induced chordless cycles (holes) and strengthen the canonical linear relaxation by enforcing constraints that every feasible chordal completion must satisfy. To handle the exponentially many such inequalities, we develop a dedicated separation routine capable of detecting violated k-hole constraints within a cutting-plane framework. Our computational results show that incorporating these inequalities substantially improves the quality of the lower bounds across a broad range of graph classes, in some cases nearly closing the integrality gap.
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Andrea D'Ascenzo. K-Hole Separation in PEO‑Based ILP Treewidth Formulation. In 24th International Symposium on Experimental Algorithms (SEA 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 371, pp. 14:1-14:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{dascenzo:LIPIcs.SEA.2026.14,
  author =	{D'Ascenzo, Andrea},
  title =	{{K-Hole Separation in PEO‑Based ILP Treewidth Formulation}},
  booktitle =	{24th International Symposium on Experimental Algorithms (SEA 2026)},
  pages =	{14:1--14:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-422-2},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{371},
  editor =	{Aum\"{u}ller, Martin and Finocchi, Irene},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2026.14},
  URN =		{urn:nbn:de:0030-drops-260186},
  doi =		{10.4230/LIPIcs.SEA.2026.14},
  annote =	{Keywords: Treewidth, Integer Linear Programming, Polyhedral Combinatorics, Chordal Completion, Induced Cycles}
}
Document
DOI: 10.4230/LIPIcs.SEA.2026.15
Computational Generation of Substrate-Specific Molecular Cages

Authors: Noé Demange, Yann Strozecki, and Sandrine Vial

Published in: LIPIcs, Volume 371, 24th International Symposium on Experimental Algorithms (SEA 2026)

Abstract
In this paper, we propose a method to build molecular cages designed to capture a specific substrate. We model a cage as a graph of atoms with coordinates in space, and several constraints on their edges (degree, length and angle). We use a simple method to place binding patterns which are able to interact with certain parts of the substrate. We then propose an algorithm which considers all possible ways of connecting these binding patterns and try to construct the smallest possible molecular paths realizing these connections. We investigate many variants of our method in order to obtain the most efficient algorithm, able to build cages of more than a hundred atoms.
Cite as

Noé Demange, Yann Strozecki, and Sandrine Vial. Computational Generation of Substrate-Specific Molecular Cages. In 24th International Symposium on Experimental Algorithms (SEA 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 371, pp. 15:1-15:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{demange_et_al:LIPIcs.SEA.2026.15,
  author =	{Demange, No\'{e} and Strozecki, Yann and Vial, Sandrine},
  title =	{{Computational Generation of Substrate-Specific Molecular Cages}},
  booktitle =	{24th International Symposium on Experimental Algorithms (SEA 2026)},
  pages =	{15:1--15:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-422-2},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{371},
  editor =	{Aum\"{u}ller, Martin and Finocchi, Irene},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2026.15},
  URN =		{urn:nbn:de:0030-drops-260191},
  doi =		{10.4230/LIPIcs.SEA.2026.15},
  annote =	{Keywords: Enumeration, Molecular Cage, Cheminformatics, Geometric Algorithms, Experimental Algorithms}
}
Document
DOI: 10.4230/LIPIcs.CPM.2026.12
Maximizing Diversity in (Near-)Median String Selection

Authors: Diptarka Chakraborty, Rudrayan Kundu, Nidhi Purohit, and Aravinda Kanchana Ruwanpathirana

Published in: LIPIcs, Volume 369, 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026)

Abstract
Given a set of strings over a specified alphabet, identifying a median or consensus string that minimizes the total distance to all input strings is a fundamental data aggregation problem. When the Hamming distance is considered as the underlying metric, this problem has extensive applications, ranging from bioinformatics to pattern recognition. However, modern applications often require the generation of multiple (near-)optimal yet diverse median strings to enhance flexibility and robustness in decision-making. In this study, we address this need by focusing on two prominent diversity measures: sum dispersion and min dispersion. We first introduce an exact algorithm for the diameter variant of the problem, which identifies pairs of near-optimal medians that are maximally diverse. Subsequently, we propose a (1-ε)-approximation algorithm (for any ε > 0) for sum dispersion, as well as a bi-criteria approximation algorithm for the more challenging min dispersion case, allowing the generation of multiple (more than two) diverse near-optimal Hamming medians. Our approach primarily leverages structural insights into the Hamming median space and also draws on techniques from error-correcting code construction to establish these results.
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Diptarka Chakraborty, Rudrayan Kundu, Nidhi Purohit, and Aravinda Kanchana Ruwanpathirana. Maximizing Diversity in (Near-)Median String Selection. In 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 369, pp. 12:1-12:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{chakraborty_et_al:LIPIcs.CPM.2026.12,
  author =	{Chakraborty, Diptarka and Kundu, Rudrayan and Purohit, Nidhi and Ruwanpathirana, Aravinda Kanchana},
  title =	{{Maximizing Diversity in (Near-)Median String Selection}},
  booktitle =	{37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026)},
  pages =	{12:1--12:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-420-8},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{369},
  editor =	{Bille, Philip and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2026.12},
  URN =		{urn:nbn:de:0030-drops-259382},
  doi =		{10.4230/LIPIcs.CPM.2026.12},
  annote =	{Keywords: Diversity maximization, Hamming median, diameter, dispersion, approximation algorithms}
}
Document
DOI: 10.4230/LIPIcs.ICDT.2026.17
Algorithms for Optimizing Acyclic Queries

Authors: Zheng Luo, Wim Van den Broeck, Guy Van den Broeck, and Yisu Remy Wang

Published in: LIPIcs, Volume 365, 29th International Conference on Database Theory (ICDT 2026)

Abstract
Most research on query optimization has centered on binary join algorithms like hash join and sort-merge join. However, recent years have seen growing interest in theoretically optimal algorithms, notably Yannakakis' algorithm. These algorithms rely on join trees, which differ from the operator trees for binary joins and require new optimization techniques. We propose three approaches to constructing join trees for acyclic queries. First, we give an algorithm to enumerate all join trees of an α-acyclic query by edits in linear time with amortized constant delay, which forms the basis of a cost-based optimizer for acyclic joins. Second, we show the Maximum Cardinality Search algorithm by Tarjan and Yannakakis constructs the unique shallowest join tree for any Berge-acyclic query, thus enabling parallel execution of large join queries. Finally, we prove that a simple algorithm by Hu et al. converts any connected left-deep linear plan of a γ-acyclic query into a join tree, allowing reuse of optimizers developed for binary joins.
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Zheng Luo, Wim Van den Broeck, Guy Van den Broeck, and Yisu Remy Wang. Algorithms for Optimizing Acyclic Queries. In 29th International Conference on Database Theory (ICDT 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 365, pp. 17:1-17:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{luo_et_al:LIPIcs.ICDT.2026.17,
  author =	{Luo, Zheng and Van den Broeck, Wim and Van den Broeck, Guy and Wang, Yisu Remy},
  title =	{{Algorithms for Optimizing Acyclic Queries}},
  booktitle =	{29th International Conference on Database Theory (ICDT 2026)},
  pages =	{17:1--17:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-413-0},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{365},
  editor =	{ten Cate, Balder and Funk, Maurice},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICDT.2026.17},
  URN =		{urn:nbn:de:0030-drops-256319},
  doi =		{10.4230/LIPIcs.ICDT.2026.17},
  annote =	{Keywords: Query Optimization, Join Trees, Enumeration}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.39
Efficient Algorithms for the Disjoint Shortest Paths Problem and Its Extensions

Authors: Keerti Choudhary, Amit Kumar, and Lakshay Saggi

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
We study the 2-Disjoint Shortest Paths (2-DSP) problem: given a directed weighted graph and two terminal pairs (s₁,t₁) and (s₂,t₂), decide whether there exist vertex-disjoint shortest paths between each pair. Building on recent advances in disjoint shortest paths for DAGs and undirected graphs (Akmal et al. 2024), we present an O(mn log n)-time algorithm for this problem in weighted directed graphs that do not contain negative or zero weight cycles. This algorithm presents a significant improvement over the previously known O(m⁵n)-time bound (Berczi et al. 2017). Our approach exploits the algebraic structure of polynomials that enumerate shortest paths between terminal pairs. A key insight is that these polynomials admit a recursive decomposition, enabling efficient evaluation via dynamic programming over fields of characteristic two. Furthermore, we demonstrate how to report the corresponding paths in O(mn² log n)-time. In addition, we extend our techniques to a more general setting: given two terminal pairs (s₁, t₁) and (s₂, t₂) in a directed graph, find the minimum possible number of vertex intersections between any shortest path from s₁ to t₁ and s₂ to t₂. We call this the Minimum 2-Disjoint Shortest Paths (Min-2-DSP) problem. We provide in this paper the first efficient algorithm for this problem, including an O(m² n³)-time algorithm for directed graphs with positive edge weights, and an O(m+n)-time algorithm for DAGs and undirected graphs. Moreover, if the number of intersecting vertices is at least one, we show that it is possible to report the paths in the same O(m+n)-time. This is somewhat surprising, as there is no known o(mn) time algorithm for explicitly reporting the paths if they are vertex-disjoint, and is left as an open problem in (Akmal et al. 2024).
Cite as

Keerti Choudhary, Amit Kumar, and Lakshay Saggi. Efficient Algorithms for the Disjoint Shortest Paths Problem and Its Extensions. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 39:1-39:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{choudhary_et_al:LIPIcs.ITCS.2026.39,
  author =	{Choudhary, Keerti and Kumar, Amit and Saggi, Lakshay},
  title =	{{Efficient Algorithms for the Disjoint Shortest Paths Problem and Its Extensions}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{39:1--39:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.39},
  URN =		{urn:nbn:de:0030-drops-253267},
  doi =		{10.4230/LIPIcs.ITCS.2026.39},
  annote =	{Keywords: Disjoint paths, Disjoint shortest paths, Algebraic graph algorithms}
}
Document
DOI: 10.4230/LIPIcs.IPEC.2025.21
A Polynomial Delay Algorithm Generating All Potential Maximal Cliques in Triconnected Planar Graphs

Authors: Alexander Grigoriev, Yasuaki Kobayashi, Hisao Tamaki, and Tom C. van der Zanden

Published in: LIPIcs, Volume 358, 20th International Symposium on Parameterized and Exact Computation (IPEC 2025)

Abstract
We develop a new characterization of potential maximal cliques of a triconnected planar graph and, using this characterization, give a polynomial delay algorithm generating all potential maximal cliques of a given triconnected planar graph. Combined with the dynamic programming algorithm due to Bouchitté and Todinca, this algorithm leads to a treewidth algorithm for general planar graphs that runs in time linear in the number of potential maximal cliques and polynomial in the number of vertices.
Cite as

Alexander Grigoriev, Yasuaki Kobayashi, Hisao Tamaki, and Tom C. van der Zanden. A Polynomial Delay Algorithm Generating All Potential Maximal Cliques in Triconnected Planar Graphs. In 20th International Symposium on Parameterized and Exact Computation (IPEC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 358, pp. 21:1-21:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{grigoriev_et_al:LIPIcs.IPEC.2025.21,
  author =	{Grigoriev, Alexander and Kobayashi, Yasuaki and Tamaki, Hisao and van der Zanden, Tom C.},
  title =	{{A Polynomial Delay Algorithm Generating All Potential Maximal Cliques in Triconnected Planar Graphs}},
  booktitle =	{20th International Symposium on Parameterized and Exact Computation (IPEC 2025)},
  pages =	{21:1--21:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-407-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{358},
  editor =	{Agrawal, Akanksha and van Leeuwen, Erik Jan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2025.21},
  URN =		{urn:nbn:de:0030-drops-251530},
  doi =		{10.4230/LIPIcs.IPEC.2025.21},
  annote =	{Keywords: potential maximal cliques, treewidth, planar graphs, triconnected planar graphs, polynomial delay generation}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.47
Hardness and Fixed Parameter Tractability for Pinwheel Scheduling Problems

Authors: Yusuke Kobayashi and Bingkai Lin

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
In the Pinwheel Packing problem, we are given a set of recurring tasks, each associated with a positive integer a_i for task i. The objective is to select one task to perform each day such that every task i is performed at least once within every a_i consecutive days. The exact computational complexity of this problem, where ∑ 1/a_i = 1, has remained an open question for more than 30 years; in particular, it is still unknown whether the problem is NP-hard. The first contribution of this paper is to show that Pinwheel Packing cannot be solved in polynomial time under a standard complexity assumption, improving upon the hardness result shown by Jacobs and Longo. Additionally, we present fixed-parameter algorithms for variants of Pinwheel Packing, parameterized by the number of tasks.
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Yusuke Kobayashi and Bingkai Lin. Hardness and Fixed Parameter Tractability for Pinwheel Scheduling Problems. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 47:1-47:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kobayashi_et_al:LIPIcs.ISAAC.2025.47,
  author =	{Kobayashi, Yusuke and Lin, Bingkai},
  title =	{{Hardness and Fixed Parameter Tractability for Pinwheel Scheduling Problems}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{47:1--47:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.47},
  URN =		{urn:nbn:de:0030-drops-249558},
  doi =		{10.4230/LIPIcs.ISAAC.2025.47},
  annote =	{Keywords: Pinwheel Scheduling, Polynomial-time Solvability, Packing and Covering, Fixed Parameter Algorithms}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.24
Enumerating the Irreducible Closed Sets of an Acyclic Implicational Base of Bounded Degree

Authors: Oscar Defrain, Arthur Ohana, and Simon Vilmin

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
We consider the problem of enumerating the irreducible closed sets of a closure system given by an implicational base. To date, the complexity status of this problem is widely open, and it is further known to generalize the notorious hypergraph dualization problem, even in the case of acyclic convex geometries, i.e., closure systems admitting an acyclic implicational base. This paper studies this case with a focus on the degree, which corresponds to the maximal number of implications in which an element occurs. We show that the problem is tractable for bounded values of this parameter, even when relaxed to the notions of premise- and conclusion-degree. Our algorithms rely on a sequential approach leveraging from acyclicity, combined with the solution graph traversal technique for the case of premise-degree. They are shown to perform in incremental-polynomial time. These results are complemented in the long version of this document by showing that the dual problem of constructing the implicational base can be solved in polynomial time. Finally, we argue that our running times cannot be improved to polynomial delay using the standard framework of flashlight search.
Cite as

Oscar Defrain, Arthur Ohana, and Simon Vilmin. Enumerating the Irreducible Closed Sets of an Acyclic Implicational Base of Bounded Degree. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 24:1-24:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{defrain_et_al:LIPIcs.ISAAC.2025.24,
  author =	{Defrain, Oscar and Ohana, Arthur and Vilmin, Simon},
  title =	{{Enumerating the Irreducible Closed Sets of an Acyclic Implicational Base of Bounded Degree}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{24:1--24:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.24},
  URN =		{urn:nbn:de:0030-drops-249321},
  doi =		{10.4230/LIPIcs.ISAAC.2025.24},
  annote =	{Keywords: Algorithmic enumeration, closure systems, acyclic convex geometries, solution graph traversal, flashlight search, extension, hypergraph dualization}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.11
Finding Diverse Solutions in Combinatorial Problems with a Distributive Lattice Structure

Authors: Mark de Berg, Andrés López Martínez, and Frits Spieksma

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
We generalize the polynomial-time solvability of k-Diverse Minimum s-t Cuts (De Berg et al., ISAAC'23) to a wider class of combinatorial problems whose solution sets have a distributive lattice structure. We identify three structural conditions that, when met by a problem, ensure that a k-sized multiset of maximally-diverse solutions - measured by the sum of pairwise Hamming distances - can be found in polynomial time. We apply this framework to obtain polynomial-time algorithms for finding diverse minimum s-t cuts, diverse stable matchings, and diverse market-clearing price vectors. Moreover, we show that the framework extends to two other natural measures of diversity. Lastly, we present a simpler algorithmic framework for finding a largest set of pairwise disjoint solutions in problems that meet these structural conditions.
Cite as

Mark de Berg, Andrés López Martínez, and Frits Spieksma. Finding Diverse Solutions in Combinatorial Problems with a Distributive Lattice Structure. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 11:1-11:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{deberg_et_al:LIPIcs.ISAAC.2025.11,
  author =	{de Berg, Mark and L\'{o}pez Mart{\'\i}nez, Andr\'{e}s and Spieksma, Frits},
  title =	{{Finding Diverse Solutions in Combinatorial Problems with a Distributive Lattice Structure}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{11:1--11:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.11},
  URN =		{urn:nbn:de:0030-drops-249197},
  doi =		{10.4230/LIPIcs.ISAAC.2025.11},
  annote =	{Keywords: Diversity, Lattice Theory, Submodular Function Minimization}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.33
Coloring Reconfiguration Under Color Swapping

Authors: Janosch Fuchs, Rin Saito, Tatsuhiro Suga, Takahiro Suzuki, and Yuma Tamura

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
In the Coloring Reconfiguration problem, we are given two proper k-colorings of a graph and asked to decide whether one can be transformed into the other by repeatedly applying a specified recoloring rule, while maintaining a proper coloring throughout. For this problem, two recoloring rules have been widely studied: single-vertex recoloring and Kempe chain recoloring. In this paper, we introduce a new rule, called color swapping, where two adjacent vertices may exchange their colors, so that the resulting coloring remains proper, and study the computational complexity of the problem under this rule. We first establish a complexity dichotomy with respect to k: the problem is solvable in polynomial time for k ≤ 2, and is PSPACE-complete for k ≥ 3. We further show that the problem remains PSPACE-complete even on restricted graph classes, including bipartite graphs, split graphs, and planar graphs of bounded degree. In contrast, we present polynomial-time algorithms for several graph classes: for paths when k = 3, for split graphs when k is fixed, and for cographs when k is arbitrary.
Cite as

Janosch Fuchs, Rin Saito, Tatsuhiro Suga, Takahiro Suzuki, and Yuma Tamura. Coloring Reconfiguration Under Color Swapping. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 33:1-33:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{fuchs_et_al:LIPIcs.ISAAC.2025.33,
  author =	{Fuchs, Janosch and Saito, Rin and Suga, Tatsuhiro and Suzuki, Takahiro and Tamura, Yuma},
  title =	{{Coloring Reconfiguration Under Color Swapping}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{33:1--33:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.33},
  URN =		{urn:nbn:de:0030-drops-249411},
  doi =		{10.4230/LIPIcs.ISAAC.2025.33},
  annote =	{Keywords: Combinatorial reconfiguration, graph coloring, PSPACE-complete, graph algorithm}
}
Document
DOI: 10.4230/LIPIcs.GD.2025.17
Visualizing Treewidth

Authors: Alvin Chiu, Thomas Depian, David Eppstein, Michael T. Goodrich, and Martin Nöllenburg

Published in: LIPIcs, Volume 357, 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)

Abstract
A witness drawing of a graph is a visualization that clearly shows a given property of a graph. We study and implement various drawing paradigms for witness drawings to clearly show that graphs have bounded pathwidth or treewidth. Our approach draws the tree decomposition or path decomposition as a tree of bags, with induced subgraphs shown in each bag, and with "tracks" for each graph vertex connecting its copies in multiple bags. Within bags, we optimize the vertex layout to avoid crossings of edges and tracks. We implement a visualization prototype for crossing minimization using dynamic programming for graphs of small width and heuristic approaches for graphs of larger width. We introduce a taxonomy of drawing styles, which render the subgraph for each bag as an arc diagram with one or two pages or as a circular layout with straight-line edges, and we render tracks either with straight lines or with orbital-radial paths.
Cite as

Alvin Chiu, Thomas Depian, David Eppstein, Michael T. Goodrich, and Martin Nöllenburg. Visualizing Treewidth. In 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 357, pp. 17:1-17:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chiu_et_al:LIPIcs.GD.2025.17,
  author =	{Chiu, Alvin and Depian, Thomas and Eppstein, David and Goodrich, Michael T. and N\"{o}llenburg, Martin},
  title =	{{Visualizing Treewidth}},
  booktitle =	{33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)},
  pages =	{17:1--17:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-403-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{357},
  editor =	{Dujmovi\'{c}, Vida and Montecchiani, Fabrizio},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GD.2025.17},
  URN =		{urn:nbn:de:0030-drops-250034},
  doi =		{10.4230/LIPIcs.GD.2025.17},
  annote =	{Keywords: Graph drawing, witness drawings, pathwidth, treewidth}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.57
Improved Hardness-Of-Approximation for Token-Swapping

Authors: Sam Hiken and Nicole Wein

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
We study the token swapping problem, in which we are given a graph with an initial assignment of one distinct token to each vertex, and a final desired assignment (again with one token per vertex). The goal is to find the minimum length sequence of swaps of adjacent tokens required to get from the initial to the final assignment. The token swapping problem is known to be NP-complete. It is also known to have a polynomial-time 4-approximation algorithm. From the hardness-of-approximation side, it is known to be NP-hard to approximate with a ratio better than 1001/1000. Our main result is an improvement of the approximation ratio of the lower bound: We show that it is NP-hard to approximate with ratio better than 14/13. We then turn our attention to the 0/1-weighted version, in which every token has a weight of either 0 or 1, and the cost of a swap is the sum of the weights of the two participating tokens. Unlike standard token swapping, no constant-factor approximation is known for this version, and we provide an explanation. We prove that 0/1-weighted token swapping is NP-hard to approximate with ratio better than (1-ε) ln(n) for any constant ε > 0. Lastly, we prove two barrier results for the standard (unweighted) token swapping problem. We show that one cannot beat the current best known approximation ratio of 4 using a large class of algorithms which includes all known algorithms, nor can one beat it using a common analysis framework.
Cite as

Sam Hiken and Nicole Wein. Improved Hardness-Of-Approximation for Token-Swapping. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 57:1-57:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{hiken_et_al:LIPIcs.ESA.2025.57,
  author =	{Hiken, Sam and Wein, Nicole},
  title =	{{Improved Hardness-Of-Approximation for Token-Swapping}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{57:1--57:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.57},
  URN =		{urn:nbn:de:0030-drops-245251},
  doi =		{10.4230/LIPIcs.ESA.2025.57},
  annote =	{Keywords: algorithms, token-swapping, hardness-of-approximation, lower-bounds}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.46
Max-Distance Sparsification for Diversification and Clustering

Authors: Soh Kumabe

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Let 𝒟 be a set family that is the solution domain of some combinatorial problem. The max-min diversification problem on 𝒟 is the problem to select k sets from 𝒟 such that the Hamming distance between any two selected sets is at least d. FPT algorithms parameterized by k+𝓁, where 𝓁 = max_{D ∈ 𝒟}|D|, and k+d have been actively studied recently for several specific domains. This paper provides unified algorithmic frameworks to solve this problem. Specifically, for each parameterization k+𝓁 and k+d, we provide an FPT oracle algorithm for the max-min diversification problem using oracles related to 𝒟. We then demonstrate that our frameworks provide the first FPT algorithms on several new domains 𝒟, including the domain of t-linear matroid intersection, almost 2-SAT, minimum edge s,t-flows, vertex sets of s,t-mincut, vertex sets of edge bipartization, and Steiner trees. We also demonstrate that our frameworks generalize most of the existing domain-specific tractability results. Our main technical breakthrough is introducing the notion of max-distance sparsifier of 𝒟, a domain on which the max-min diversification problem is equivalent to the same problem on the original domain 𝒟. The core of our framework is to design FPT oracle algorithms that construct a constant-size max-distance sparsifier of 𝒟. Using max-distance sparsifiers, we provide FPT algorithms for the max-min and max-sum diversification problems on 𝒟, as well as k-center and k-sum-of-radii clustering problems on 𝒟, which are also natural problems in the context of diversification and have their own interests.
Cite as

Soh Kumabe. Max-Distance Sparsification for Diversification and Clustering. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 46:1-46:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kumabe:LIPIcs.ESA.2025.46,
  author =	{Kumabe, Soh},
  title =	{{Max-Distance Sparsification for Diversification and Clustering}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{46:1--46:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.46},
  URN =		{urn:nbn:de:0030-drops-245146},
  doi =		{10.4230/LIPIcs.ESA.2025.46},
  annote =	{Keywords: Fixed-Parameter Tractability, Diversification, Clustering}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.4
Optimal Quantum Algorithm for Estimating Fidelity to a Pure State

Authors: Wang Fang and Qisheng Wang

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
We present an optimal quantum algorithm for fidelity estimation between two quantum states when one of them is pure. In particular, the (square root) fidelity of a mixed state to a pure state can be estimated to within additive error ε by using Θ(1/ε) queries to their state-preparation circuits, achieving a quadratic speedup over the folklore O(1/ε²). Our approach is technically simple, and can moreover estimate the quantity √{tr(ρσ²)} that is not common in the literature. To the best of our knowledge, this is the first query-optimal approach to fidelity estimation involving mixed states.
Cite as

Wang Fang and Qisheng Wang. Optimal Quantum Algorithm for Estimating Fidelity to a Pure State. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 4:1-4:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{fang_et_al:LIPIcs.ESA.2025.4,
  author =	{Fang, Wang and Wang, Qisheng},
  title =	{{Optimal Quantum Algorithm for Estimating Fidelity to a Pure State}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{4:1--4:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.4},
  URN =		{urn:nbn:de:0030-drops-244727},
  doi =		{10.4230/LIPIcs.ESA.2025.4},
  annote =	{Keywords: Quantum computing, fidelity estimation, quantum algorithms, quantum query complexity}
}
Document
DOI: 10.4230/LIPIcs.WADS.2025.15
Enumerating Minimal Dominating Sets and Variants in Chordal Bipartite Graphs

Authors: Emanuel Castelo, Oscar Defrain, and Guilherme C. M. Gomes

Published in: LIPIcs, Volume 349, 19th International Symposium on Algorithms and Data Structures (WADS 2025)

Abstract
Enumerating minimal dominating sets with polynomial delay in bipartite graphs is a long-standing open problem. To date, even the subcase of chordal bipartite graphs is open, with the best known algorithm due to Golovach, Heggernes, Kanté, Kratsch, Sæther, and Villanger running in incremental-polynomial time. We improve on this result by providing a polynomial delay and space algorithm enumerating minimal dominating sets in chordal bipartite graphs. Additionally, we show that the total and connected variants admit polynomial and incremental-polynomial delay algorithms, respectively, within the same class. This provides an alternative proof of a result by Golovach et al. for total dominating sets, and answers an open question for the connected variant. Finally, we give evidence that the techniques used in this paper cannot be generalized to bipartite graphs for (total) minimal dominating sets, unless P = NP, and show that enumerating minimal connected dominating sets in bipartite graphs is harder than enumerating minimal transversals in general hypergraphs.
Cite as

Emanuel Castelo, Oscar Defrain, and Guilherme C. M. Gomes. Enumerating Minimal Dominating Sets and Variants in Chordal Bipartite Graphs. In 19th International Symposium on Algorithms and Data Structures (WADS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 349, pp. 15:1-15:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{castelo_et_al:LIPIcs.WADS.2025.15,
  author =	{Castelo, Emanuel and Defrain, Oscar and C. M. Gomes, Guilherme},
  title =	{{Enumerating Minimal Dominating Sets and Variants in Chordal Bipartite Graphs}},
  booktitle =	{19th International Symposium on Algorithms and Data Structures (WADS 2025)},
  pages =	{15:1--15:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-398-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{349},
  editor =	{Morin, Pat and Oh, Eunjin},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WADS.2025.15},
  URN =		{urn:nbn:de:0030-drops-242467},
  doi =		{10.4230/LIPIcs.WADS.2025.15},
  annote =	{Keywords: algorithmic enumeration, minimal dominating sets, connected dominating sets, total dominating sets, chordal bipartite graphs, sequential method, polynomial delay}
}
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