15 Search Results for "Kurita, Kazuhiro"

Document
DOI: 10.4230/LIPIcs.CPM.2026.12
Maximizing Diversity in (Near-)Median String Selection

Authors: Diptarka Chakraborty, Rudrayan Kundu, Nidhi Purohit, and Aravinda Kanchana Ruwanpathirana

Published in: LIPIcs, Volume 369, 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026)

Abstract
Given a set of strings over a specified alphabet, identifying a median or consensus string that minimizes the total distance to all input strings is a fundamental data aggregation problem. When the Hamming distance is considered as the underlying metric, this problem has extensive applications, ranging from bioinformatics to pattern recognition. However, modern applications often require the generation of multiple (near-)optimal yet diverse median strings to enhance flexibility and robustness in decision-making. In this study, we address this need by focusing on two prominent diversity measures: sum dispersion and min dispersion. We first introduce an exact algorithm for the diameter variant of the problem, which identifies pairs of near-optimal medians that are maximally diverse. Subsequently, we propose a (1-ε)-approximation algorithm (for any ε > 0) for sum dispersion, as well as a bi-criteria approximation algorithm for the more challenging min dispersion case, allowing the generation of multiple (more than two) diverse near-optimal Hamming medians. Our approach primarily leverages structural insights into the Hamming median space and also draws on techniques from error-correcting code construction to establish these results.
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Diptarka Chakraborty, Rudrayan Kundu, Nidhi Purohit, and Aravinda Kanchana Ruwanpathirana. Maximizing Diversity in (Near-)Median String Selection. In 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 369, pp. 12:1-12:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{chakraborty_et_al:LIPIcs.CPM.2026.12,
  author =	{Chakraborty, Diptarka and Kundu, Rudrayan and Purohit, Nidhi and Ruwanpathirana, Aravinda Kanchana},
  title =	{{Maximizing Diversity in (Near-)Median String Selection}},
  booktitle =	{37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026)},
  pages =	{12:1--12:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-420-8},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{369},
  editor =	{Bille, Philip and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2026.12},
  URN =		{urn:nbn:de:0030-drops-259382},
  doi =		{10.4230/LIPIcs.CPM.2026.12},
  annote =	{Keywords: Diversity maximization, Hamming median, diameter, dispersion, approximation algorithms}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.11
Finding Diverse Solutions in Combinatorial Problems with a Distributive Lattice Structure

Authors: Mark de Berg, Andrés López Martínez, and Frits Spieksma

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
We generalize the polynomial-time solvability of k-Diverse Minimum s-t Cuts (De Berg et al., ISAAC'23) to a wider class of combinatorial problems whose solution sets have a distributive lattice structure. We identify three structural conditions that, when met by a problem, ensure that a k-sized multiset of maximally-diverse solutions - measured by the sum of pairwise Hamming distances - can be found in polynomial time. We apply this framework to obtain polynomial-time algorithms for finding diverse minimum s-t cuts, diverse stable matchings, and diverse market-clearing price vectors. Moreover, we show that the framework extends to two other natural measures of diversity. Lastly, we present a simpler algorithmic framework for finding a largest set of pairwise disjoint solutions in problems that meet these structural conditions.
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Mark de Berg, Andrés López Martínez, and Frits Spieksma. Finding Diverse Solutions in Combinatorial Problems with a Distributive Lattice Structure. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 11:1-11:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{deberg_et_al:LIPIcs.ISAAC.2025.11,
  author =	{de Berg, Mark and L\'{o}pez Mart{\'\i}nez, Andr\'{e}s and Spieksma, Frits},
  title =	{{Finding Diverse Solutions in Combinatorial Problems with a Distributive Lattice Structure}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{11:1--11:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.11},
  URN =		{urn:nbn:de:0030-drops-249197},
  doi =		{10.4230/LIPIcs.ISAAC.2025.11},
  annote =	{Keywords: Diversity, Lattice Theory, Submodular Function Minimization}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.46
Max-Distance Sparsification for Diversification and Clustering

Authors: Soh Kumabe

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Let 𝒟 be a set family that is the solution domain of some combinatorial problem. The max-min diversification problem on 𝒟 is the problem to select k sets from 𝒟 such that the Hamming distance between any two selected sets is at least d. FPT algorithms parameterized by k+𝓁, where 𝓁 = max_{D ∈ 𝒟}|D|, and k+d have been actively studied recently for several specific domains. This paper provides unified algorithmic frameworks to solve this problem. Specifically, for each parameterization k+𝓁 and k+d, we provide an FPT oracle algorithm for the max-min diversification problem using oracles related to 𝒟. We then demonstrate that our frameworks provide the first FPT algorithms on several new domains 𝒟, including the domain of t-linear matroid intersection, almost 2-SAT, minimum edge s,t-flows, vertex sets of s,t-mincut, vertex sets of edge bipartization, and Steiner trees. We also demonstrate that our frameworks generalize most of the existing domain-specific tractability results. Our main technical breakthrough is introducing the notion of max-distance sparsifier of 𝒟, a domain on which the max-min diversification problem is equivalent to the same problem on the original domain 𝒟. The core of our framework is to design FPT oracle algorithms that construct a constant-size max-distance sparsifier of 𝒟. Using max-distance sparsifiers, we provide FPT algorithms for the max-min and max-sum diversification problems on 𝒟, as well as k-center and k-sum-of-radii clustering problems on 𝒟, which are also natural problems in the context of diversification and have their own interests.
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Soh Kumabe. Max-Distance Sparsification for Diversification and Clustering. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 46:1-46:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kumabe:LIPIcs.ESA.2025.46,
  author =	{Kumabe, Soh},
  title =	{{Max-Distance Sparsification for Diversification and Clustering}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{46:1--46:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.46},
  URN =		{urn:nbn:de:0030-drops-245146},
  doi =		{10.4230/LIPIcs.ESA.2025.46},
  annote =	{Keywords: Fixed-Parameter Tractability, Diversification, Clustering}
}
Document
DOI: 10.4230/LIPIcs.WADS.2025.15
Enumerating Minimal Dominating Sets and Variants in Chordal Bipartite Graphs

Authors: Emanuel Castelo, Oscar Defrain, and Guilherme C. M. Gomes

Published in: LIPIcs, Volume 349, 19th International Symposium on Algorithms and Data Structures (WADS 2025)

Abstract
Enumerating minimal dominating sets with polynomial delay in bipartite graphs is a long-standing open problem. To date, even the subcase of chordal bipartite graphs is open, with the best known algorithm due to Golovach, Heggernes, Kanté, Kratsch, Sæther, and Villanger running in incremental-polynomial time. We improve on this result by providing a polynomial delay and space algorithm enumerating minimal dominating sets in chordal bipartite graphs. Additionally, we show that the total and connected variants admit polynomial and incremental-polynomial delay algorithms, respectively, within the same class. This provides an alternative proof of a result by Golovach et al. for total dominating sets, and answers an open question for the connected variant. Finally, we give evidence that the techniques used in this paper cannot be generalized to bipartite graphs for (total) minimal dominating sets, unless P = NP, and show that enumerating minimal connected dominating sets in bipartite graphs is harder than enumerating minimal transversals in general hypergraphs.
Cite as

Emanuel Castelo, Oscar Defrain, and Guilherme C. M. Gomes. Enumerating Minimal Dominating Sets and Variants in Chordal Bipartite Graphs. In 19th International Symposium on Algorithms and Data Structures (WADS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 349, pp. 15:1-15:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{castelo_et_al:LIPIcs.WADS.2025.15,
  author =	{Castelo, Emanuel and Defrain, Oscar and C. M. Gomes, Guilherme},
  title =	{{Enumerating Minimal Dominating Sets and Variants in Chordal Bipartite Graphs}},
  booktitle =	{19th International Symposium on Algorithms and Data Structures (WADS 2025)},
  pages =	{15:1--15:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-398-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{349},
  editor =	{Morin, Pat and Oh, Eunjin},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WADS.2025.15},
  URN =		{urn:nbn:de:0030-drops-242467},
  doi =		{10.4230/LIPIcs.WADS.2025.15},
  annote =	{Keywords: algorithmic enumeration, minimal dominating sets, connected dominating sets, total dominating sets, chordal bipartite graphs, sequential method, polynomial delay}
}
Document
DOI: 10.4230/LIPIcs.WADS.2025.19
On the Enumeration of Signatures of XOR-CNF’s

Authors: Nadia Creignou, Oscar Defrain, Frédéric Olive, and Simon Vilmin

Published in: LIPIcs, Volume 349, 19th International Symposium on Algorithms and Data Structures (WADS 2025)

Abstract
Given a CNF formula φ with clauses C_1, … , C_m over a set of variables V, a truth assignment 𝐚: V → {0, 1} generates a binary sequence σ_φ(𝐚) = (C_1(𝐚), …, C_m(𝐚)), called a signature of φ, where C_i(𝐚) = 1 if clause C_i evaluates to 1 under assignment 𝐚, and C_i(𝐚) = 0 otherwise. Signatures and their associated generation problems have given rise to new yet promising research questions in algorithmic enumeration. In a recent paper, Bérczi et al. interestingly proved that generating signatures of a CNF is tractable despite the fact that verifying a solution is hard. They also showed the hardness of finding maximal signatures of an arbitrary CNF due to the intractability of satisfiability in general. Their contribution leaves open the problem of efficiently generating maximal signatures for tractable classes of CNFs, i.e., those for which satisfiability can be solved in polynomial time. Stepping into that direction, we completely characterize the complexity of generating all, minimal, and maximal signatures for XOR-CNF’s.
Cite as

Nadia Creignou, Oscar Defrain, Frédéric Olive, and Simon Vilmin. On the Enumeration of Signatures of XOR-CNF’s. In 19th International Symposium on Algorithms and Data Structures (WADS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 349, pp. 19:1-19:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{creignou_et_al:LIPIcs.WADS.2025.19,
  author =	{Creignou, Nadia and Defrain, Oscar and Olive, Fr\'{e}d\'{e}ric and Vilmin, Simon},
  title =	{{On the Enumeration of Signatures of XOR-CNF’s}},
  booktitle =	{19th International Symposium on Algorithms and Data Structures (WADS 2025)},
  pages =	{19:1--19:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-398-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{349},
  editor =	{Morin, Pat and Oh, Eunjin},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WADS.2025.19},
  URN =		{urn:nbn:de:0030-drops-242508},
  doi =		{10.4230/LIPIcs.WADS.2025.19},
  annote =	{Keywords: Algorithmic enumeration, XOR-CNF, signatures, maximal bipartite subgraphs enumeration, extension, proximity search}
}
Document
DOI: 10.4230/LIPIcs.WADS.2025.36
On the Complexity of Minimising the Moving Distance for Dispersing Objects

Authors: Nicolás Honorato-Droguett, Kazuhiro Kurita, Tesshu Hanaka, and Hirotaka Ono

Published in: LIPIcs, Volume 349, 19th International Symposium on Algorithms and Data Structures (WADS 2025)

Abstract
We study Geometric Graph Edit Distance (GGED), a graph-editing model to compute the minimum edit distance of intersection graphs that uses moving objects as an edit operation. We first show an O(n log n)-time algorithm that minimises the total moving distance to disperse unit intervals. This algorithm is applied to render a given unit interval graph (i) edgeless, (ii) acyclic and (iii) k-clique-free. We next show that GGED becomes strongly NP-hard when rendering a weighted interval graph (i) edgeless, (ii) acyclic and (iii) k-clique-free. Lastly, we prove that minimising the maximum moving distance for rendering a unit disk graph edgeless is strongly NP-hard over the L₁ and L₂ distances.
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Nicolás Honorato-Droguett, Kazuhiro Kurita, Tesshu Hanaka, and Hirotaka Ono. On the Complexity of Minimising the Moving Distance for Dispersing Objects. In 19th International Symposium on Algorithms and Data Structures (WADS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 349, pp. 36:1-36:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{honoratodroguett_et_al:LIPIcs.WADS.2025.36,
  author =	{Honorato-Droguett, Nicol\'{a}s and Kurita, Kazuhiro and Hanaka, Tesshu and Ono, Hirotaka},
  title =	{{On the Complexity of Minimising the Moving Distance for Dispersing Objects}},
  booktitle =	{19th International Symposium on Algorithms and Data Structures (WADS 2025)},
  pages =	{36:1--36:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-398-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{349},
  editor =	{Morin, Pat and Oh, Eunjin},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WADS.2025.36},
  URN =		{urn:nbn:de:0030-drops-242673},
  doi =		{10.4230/LIPIcs.WADS.2025.36},
  annote =	{Keywords: Intersection graphs, Optimisation, Graph modification}
}
Document
Research
DOI: 10.4230/OASIcs.Grossi.19
Designing Output Sensitive Algorithms for Subgraph Enumeration

Authors: Alessio Conte, Kazuhiro Kurita, Andrea Marino, Giulia Punzi, Takeaki Uno, and Kunihiro Wasa

Published in: OASIcs, Volume 132, From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday (2025)

Abstract
The enumeration of all subgraphs respecting some structural property is a fundamental task in theoretical computer science, with practical applications in many branches of data mining and network analysis. It is often of interest to only consider solutions (subgraphs) that are maximal under inclusion, and to achieve output-sensitive complexity, i.e., bounding the running time with respect to the number of subgraphs produced. In this paper, we provide a survey of techniques for designing output-sensitive algorithms for subgraph enumeration, including partition-based approaches such as flashlight search, solution-graph traversal methods such as reverse search, and cost amortization strategies such as push-out amortization. We also briefly discuss classes of efficiency, hardness of enumeration, and variants such as approximate enumeration. The paper is meant as an accessible handbook for learning the basics of the field and as a practical reference for selecting state-of-the-art subgraph enumeration strategies fitting to one’s needs.
Cite as

Alessio Conte, Kazuhiro Kurita, Andrea Marino, Giulia Punzi, Takeaki Uno, and Kunihiro Wasa. Designing Output Sensitive Algorithms for Subgraph Enumeration. In From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 132, pp. 19:1-19:40, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{conte_et_al:OASIcs.Grossi.19,
  author =	{Conte, Alessio and Kurita, Kazuhiro and Marino, Andrea and Punzi, Giulia and Uno, Takeaki and Wasa, Kunihiro},
  title =	{{Designing Output Sensitive Algorithms for Subgraph Enumeration}},
  booktitle =	{From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday},
  pages =	{19:1--19:40},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-391-1},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{132},
  editor =	{Conte, Alessio and Marino, Andrea and Rosone, Giovanna and Vitter, Jeffrey Scott},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Grossi.19},
  URN =		{urn:nbn:de:0030-drops-238180},
  doi =		{10.4230/OASIcs.Grossi.19},
  annote =	{Keywords: Graph algorithms, Graph enumeration, Output sensitive enumeration}
}
Document
Research
DOI: 10.4230/OASIcs.Grossi.20
Subsequence-Based Indices for Genome Sequence Analysis

Authors: Giovanni Buzzega, Alessio Conte, Veronica Guerrini, Giulia Punzi, Giovanna Rosone, and Lorenzo Tattini

Published in: OASIcs, Volume 132, From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday (2025)

Abstract
Compact indices are a fundamental tool in string analysis, even more so in bioinformatics, where genomic sequences can reach billions in length. This paper presents some recent results in which Roberto Grossi has been involved, showing how some of these indices do more than just efficiently represent data, but rather are able to bring out salient information within it, which can be exploited for their downstream analysis. Specifically, we first review a recently-introduced method [Guerrini et al., 2023] that employs the Burrows-Wheeler Transform to build reasonably accurate phylogenetic trees in an assembly-free scenario. We then describe a recent practical tool [Buzzega et al., 2025] for indexing Maximal Common Subsequences between strings, which can enable analysis of genomic sequence similarity. Experimentally, we show that the results produced by the one index are consistent with the expectations about the results of the other index.
Cite as

Giovanni Buzzega, Alessio Conte, Veronica Guerrini, Giulia Punzi, Giovanna Rosone, and Lorenzo Tattini. Subsequence-Based Indices for Genome Sequence Analysis. In From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 132, pp. 20:1-20:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{buzzega_et_al:OASIcs.Grossi.20,
  author =	{Buzzega, Giovanni and Conte, Alessio and Guerrini, Veronica and Punzi, Giulia and Rosone, Giovanna and Tattini, Lorenzo},
  title =	{{Subsequence-Based Indices for Genome Sequence Analysis}},
  booktitle =	{From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday},
  pages =	{20:1--20:21},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-391-1},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{132},
  editor =	{Conte, Alessio and Marino, Andrea and Rosone, Giovanna and Vitter, Jeffrey Scott},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Grossi.20},
  URN =		{urn:nbn:de:0030-drops-238199},
  doi =		{10.4230/OASIcs.Grossi.20},
  annote =	{Keywords: String Indices, Burrows-Wheeler Transform, Maximal Common Subsequences, Sequence Analysis, Phylogeny}
}
Document
DOI: 10.4230/LIPIcs.SAND.2025.9
Spanner Enumeration for Temporal Graphs

Authors: Kazuhiro Kurita, Andrea Marino, Jason Schoeters, and Takeaki Uno

Published in: LIPIcs, Volume 330, 4th Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2025)

Abstract
A spanner of a temporal graph is a subset of edges that preserves connectivity over time between vertices. A minimal spanner is one in which no additional edges can be removed without breaking this connectivity. Our focus is on enumerating minimal spanners for a given temporal graph. We explore several variations of this problem based on the type of connectivity that must be maintained, ranging from one-to-all connectivity to one-to-all-to-one, many-to-all, and finally all-to-all connectivity. We establish that these problems become progressively harder: (i) We present a polynomial-delay enumeration algorithm for one-to-all connectivity; (ii) We prove Dual-hardness for both one-to-all-to-one and many-to-all connectivity, even in the restricted case of two-to-all; (iii) Finally, for all-to-all connectivity, we show that enumeration cannot be performed in output-polynomial time unless P = NP.
Cite as

Kazuhiro Kurita, Andrea Marino, Jason Schoeters, and Takeaki Uno. Spanner Enumeration for Temporal Graphs. In 4th Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 330, pp. 9:1-9:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kurita_et_al:LIPIcs.SAND.2025.9,
  author =	{Kurita, Kazuhiro and Marino, Andrea and Schoeters, Jason and Uno, Takeaki},
  title =	{{Spanner Enumeration for Temporal Graphs}},
  booktitle =	{4th Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2025)},
  pages =	{9:1--9:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-368-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{330},
  editor =	{Meeks, Kitty and Scheideler, Christian},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2025.9},
  URN =		{urn:nbn:de:0030-drops-230621},
  doi =		{10.4230/LIPIcs.SAND.2025.9},
  annote =	{Keywords: temporal graphs, temporal spanners, one-to-all connectivity, all-to-all connectivity enumeration, NP-completeness, Dual-hardness, binary partition tree, flashlight search, polynomial delay}
}
Document
DOI: 10.4230/LIPIcs.CPM.2024.27
Finding Diverse Strings and Longest Common Subsequences in a Graph

Authors: Yuto Shida, Giulia Punzi, Yasuaki Kobayashi, Takeaki Uno, and Hiroki Arimura

Published in: LIPIcs, Volume 296, 35th Annual Symposium on Combinatorial Pattern Matching (CPM 2024)

Abstract
In this paper, we study for the first time the Diverse Longest Common Subsequences (LCSs) problem under Hamming distance. Given a set of a constant number of input strings, the problem asks to decide if there exists some subset X of K longest common subsequences whose diversity is no less than a specified threshold Δ, where we consider two types of diversities of a set X of strings of equal length: the Sum diversity and the Min diversity defined as the sum and the minimum of the pairwise Hamming distance between any two strings in X, respectively. We analyze the computational complexity of the respective problems with Sum- and Min-diversity measures, called the Max-Sum and Max-Min Diverse LCSs, respectively, considering both approximation algorithms and parameterized complexity. Our results are summarized as follows. When K is bounded, both problems are polynomial time solvable. In contrast, when K is unbounded, both problems become NP-hard, while Max-Sum Diverse LCSs problem admits a PTAS. Furthermore, we analyze the parameterized complexity of both problems with combinations of parameters K and r, where r is the length of the candidate strings to be selected. Importantly, all positive results above are proven in a more general setting, where an input is an edge-labeled directed acyclic graph (DAG) that succinctly represents a set of strings of the same length. Negative results are proven in the setting where an input is explicitly given as a set of strings. The latter results are equipped with an encoding such a set as the longest common subsequences of a specific input string set.
Cite as

Yuto Shida, Giulia Punzi, Yasuaki Kobayashi, Takeaki Uno, and Hiroki Arimura. Finding Diverse Strings and Longest Common Subsequences in a Graph. In 35th Annual Symposium on Combinatorial Pattern Matching (CPM 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 296, pp. 27:1-27:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{shida_et_al:LIPIcs.CPM.2024.27,
  author =	{Shida, Yuto and Punzi, Giulia and Kobayashi, Yasuaki and Uno, Takeaki and Arimura, Hiroki},
  title =	{{Finding Diverse Strings and Longest Common Subsequences in a Graph}},
  booktitle =	{35th Annual Symposium on Combinatorial Pattern Matching (CPM 2024)},
  pages =	{27:1--27:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-326-3},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{296},
  editor =	{Inenaga, Shunsuke and Puglisi, Simon J.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2024.27},
  URN =		{urn:nbn:de:0030-drops-201370},
  doi =		{10.4230/LIPIcs.CPM.2024.27},
  annote =	{Keywords: Sequence analysis, longest common subsequence, Hamming distance, dispersion, approximation algorithms, parameterized complexity}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2023.58
Polynomial-Delay Enumeration of Large Maximal Common Independent Sets in Two Matroids

Authors: Yasuaki Kobayashi, Kazuhiro Kurita, and Kunihiro Wasa

Published in: LIPIcs, Volume 272, 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)

Abstract
Finding a maximum cardinality common independent set in two matroids (also known as Matroid Intersection) is a classical combinatorial optimization problem, which generalizes several well-known problems, such as finding a maximum bipartite matching, a maximum colorful forest, and an arborescence in directed graphs. Enumerating all maximal common independent sets in two (or more) matroids is a classical enumeration problem. In this paper, we address an "intersection" of these problems: Given two matroids and a threshold τ, the goal is to enumerate all maximal common independent sets in the matroids with cardinality at least τ. We show that this problem can be solved in polynomial delay and polynomial space. We also discuss how to enumerate all maximal common independent sets of two matroids in non-increasing order of their cardinalities.
Cite as

Yasuaki Kobayashi, Kazuhiro Kurita, and Kunihiro Wasa. Polynomial-Delay Enumeration of Large Maximal Common Independent Sets in Two Matroids. In 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 272, pp. 58:1-58:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@InProceedings{kobayashi_et_al:LIPIcs.MFCS.2023.58,
  author =	{Kobayashi, Yasuaki and Kurita, Kazuhiro and Wasa, Kunihiro},
  title =	{{Polynomial-Delay Enumeration of Large Maximal Common Independent Sets in Two Matroids}},
  booktitle =	{48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)},
  pages =	{58:1--58:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-292-1},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{272},
  editor =	{Leroux, J\'{e}r\^{o}me and Lombardy, Sylvain and Peleg, David},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2023.58},
  URN =		{urn:nbn:de:0030-drops-185921},
  doi =		{10.4230/LIPIcs.MFCS.2023.58},
  annote =	{Keywords: Polynomial-delay enumeration, Ranked Enumeration, Matroid intersection, Reverse search}
}
Document
DOI: 10.4230/LIPIcs.CPM.2023.3
Optimal LZ-End Parsing Is Hard

Authors: Hideo Bannai, Mitsuru Funakoshi, Kazuhiro Kurita, Yuto Nakashima, Kazuhisa Seto, and Takeaki Uno

Published in: LIPIcs, Volume 259, 34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023)

Abstract
LZ-End is a variant of the well-known Lempel-Ziv parsing family such that each phrase of the parsing has a previous occurrence, with the additional constraint that the previous occurrence must end at the end of a previous phrase. LZ-End was initially proposed as a greedy parsing, where each phrase is determined greedily from left to right, as the longest factor that satisfies the above constraint [Kreft & Navarro, 2010]. In this work, we consider an optimal LZ-End parsing that has the minimum number of phrases in such parsings. We show that a decision version of computing the optimal LZ-End parsing is NP-complete by showing a reduction from the vertex cover problem. Moreover, we give a MAX-SAT formulation for the optimal LZ-End parsing adapting an approach for computing various NP-hard repetitiveness measures recently presented by [Bannai et al., 2022]. We also consider the approximation ratio of the size of greedy LZ-End parsing to the size of the optimal LZ-End parsing, and give a lower bound of the ratio which asymptotically approaches 2.
Cite as

Hideo Bannai, Mitsuru Funakoshi, Kazuhiro Kurita, Yuto Nakashima, Kazuhisa Seto, and Takeaki Uno. Optimal LZ-End Parsing Is Hard. In 34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 259, pp. 3:1-3:11, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@InProceedings{bannai_et_al:LIPIcs.CPM.2023.3,
  author =	{Bannai, Hideo and Funakoshi, Mitsuru and Kurita, Kazuhiro and Nakashima, Yuto and Seto, Kazuhisa and Uno, Takeaki},
  title =	{{Optimal LZ-End Parsing Is Hard}},
  booktitle =	{34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023)},
  pages =	{3:1--3:11},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-276-1},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{259},
  editor =	{Bulteau, Laurent and Lipt\'{a}k, Zsuzsanna},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2023.3},
  URN =		{urn:nbn:de:0030-drops-179571},
  doi =		{10.4230/LIPIcs.CPM.2023.3},
  annote =	{Keywords: Data Compression, LZ-End, Repetitiveness measures}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2020.60
Efficient Enumerations for Minimal Multicuts and Multiway Cuts

Authors: Kazuhiro Kurita and Yasuaki Kobayashi

Published in: LIPIcs, Volume 170, 45th International Symposium on Mathematical Foundations of Computer Science (MFCS 2020)

Abstract
Let G = (V, E) be an undirected graph and let B ⊆ V × V be a set of terminal pairs. A node/edge multicut is a subset of vertices/edges of G whose removal destroys all the paths between every terminal pair in B. The problem of computing a minimum node/edge multicut is NP-hard and extensively studied from several viewpoints. In this paper, we study the problem of enumerating all minimal node multicuts. We give an incremental polynomial delay enumeration algorithm for minimal node multicuts, which extends an enumeration algorithm due to Khachiyan et al. (Algorithmica, 2008) for minimal edge multicuts. Important special cases of node/edge multicuts are node/edge multiway cuts, where the set of terminal pairs contains every pair of vertices in some subset T ⊆ V, that is, B = T × T. We improve the running time bound for this special case: We devise a polynomial delay and exponential space enumeration algorithm for minimal node multiway cuts and a polynomial delay and space enumeration algorithm for minimal edge multiway cuts.
Cite as

Kazuhiro Kurita and Yasuaki Kobayashi. Efficient Enumerations for Minimal Multicuts and Multiway Cuts. In 45th International Symposium on Mathematical Foundations of Computer Science (MFCS 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 170, pp. 60:1-60:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

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@InProceedings{kurita_et_al:LIPIcs.MFCS.2020.60,
  author =	{Kurita, Kazuhiro and Kobayashi, Yasuaki},
  title =	{{Efficient Enumerations for Minimal Multicuts and Multiway Cuts}},
  booktitle =	{45th International Symposium on Mathematical Foundations of Computer Science (MFCS 2020)},
  pages =	{60:1--60:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-159-7},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{170},
  editor =	{Esparza, Javier and Kr\'{a}l', Daniel},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2020.60},
  URN =		{urn:nbn:de:0030-drops-127272},
  doi =		{10.4230/LIPIcs.MFCS.2020.60},
  annote =	{Keywords: Multicuts, Multiway cuts, Enumeration algorithms}
}
Document
DOI: 10.4230/LIPIcs.CPM.2020.2
Finding the Anticover of a String

Authors: Mai Alzamel, Alessio Conte, Shuhei Denzumi, Roberto Grossi, Costas S. Iliopoulos, Kazuhiro Kurita, and Kunihiro Wasa

Published in: LIPIcs, Volume 161, 31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)

Abstract
A k-anticover of a string x is a set of pairwise distinct factors of x of equal length k, such that every symbol of x is contained into an occurrence of at least one of those factors. The existence of a k-anticover can be seen as a notion of non-redundancy, which has application in computational biology, where they are associated with various non-regulatory mechanisms. In this paper we address the complexity of the problem of finding a k-anticover of a string x if it exists, showing that the decision problem is NP-complete on general strings for k ≥ 3. We also show that the problem admits a polynomial-time solution for k=2. For unbounded k, we provide an exact exponential algorithm to find a k-anticover of a string of length n (or determine that none exists), which runs in O*(min {3^{(n-k)/3)}, ((k(k+1))/2)^{n/(k+1)) time using polynomial space.
Cite as

Mai Alzamel, Alessio Conte, Shuhei Denzumi, Roberto Grossi, Costas S. Iliopoulos, Kazuhiro Kurita, and Kunihiro Wasa. Finding the Anticover of a String. In 31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 161, pp. 2:1-2:11, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

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@InProceedings{alzamel_et_al:LIPIcs.CPM.2020.2,
  author =	{Alzamel, Mai and Conte, Alessio and Denzumi, Shuhei and Grossi, Roberto and Iliopoulos, Costas S. and Kurita, Kazuhiro and Wasa, Kunihiro},
  title =	{{Finding the Anticover of a String}},
  booktitle =	{31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)},
  pages =	{2:1--2:11},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-149-8},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{161},
  editor =	{G{\o}rtz, Inge Li and Weimann, Oren},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.2},
  URN =		{urn:nbn:de:0030-drops-121270},
  doi =		{10.4230/LIPIcs.CPM.2020.2},
  annote =	{Keywords: Anticover, String algorithms, Stringology, NP-complete}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2018.8
Efficient Enumeration of Dominating Sets for Sparse Graphs

Authors: Kazuhiro Kurita, Kunihiro Wasa, Hiroki Arimura, and Takeaki Uno

Published in: LIPIcs, Volume 123, 29th International Symposium on Algorithms and Computation (ISAAC 2018)

Abstract
A dominating set D of a graph G is a set of vertices such that any vertex in G is in D or its neighbor is in D. Enumeration of minimal dominating sets in a graph is one of central problems in enumeration study since enumeration of minimal dominating sets corresponds to enumeration of minimal hypergraph transversal. However, enumeration of dominating sets including non-minimal ones has not been received much attention. In this paper, we address enumeration problems for dominating sets from sparse graphs which are degenerate graphs and graphs with large girth, and we propose two algorithms for solving the problems. The first algorithm enumerates all the dominating sets for a k-degenerate graph in O(k) time per solution using O(n + m) space, where n and m are respectively the number of vertices and edges in an input graph. That is, the algorithm is optimal for graphs with constant degeneracy such as trees, planar graphs, H-minor free graphs with some fixed H. The second algorithm enumerates all the dominating sets in constant time per solution for input graphs with girth at least nine.
Cite as

Kazuhiro Kurita, Kunihiro Wasa, Hiroki Arimura, and Takeaki Uno. Efficient Enumeration of Dominating Sets for Sparse Graphs. In 29th International Symposium on Algorithms and Computation (ISAAC 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 123, pp. 8:1-8:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

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@InProceedings{kurita_et_al:LIPIcs.ISAAC.2018.8,
  author =	{Kurita, Kazuhiro and Wasa, Kunihiro and Arimura, Hiroki and Uno, Takeaki},
  title =	{{Efficient Enumeration of Dominating Sets for Sparse Graphs}},
  booktitle =	{29th International Symposium on Algorithms and Computation (ISAAC 2018)},
  pages =	{8:1--8:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-094-1},
  ISSN =	{1868-8969},
  year =	{2018},
  volume =	{123},
  editor =	{Hsu, Wen-Lian and Lee, Der-Tsai and Liao, Chung-Shou},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2018.8},
  URN =		{urn:nbn:de:0030-drops-99560},
  doi =		{10.4230/LIPIcs.ISAAC.2018.8},
  annote =	{Keywords: Enumeration algorithm, polynomial amortized time, dominating set, girth, degeneracy}
}
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