19 Search Results for "McConnell, Ross M."

Document
DOI: 10.4230/LIPIcs.CPM.2026.10
R-Enum Revisited: Speedup and Extension for Context-Sensitive Repeats and Net Frequencies

Authors: Kotaro Kimura and Tomohiro I

Published in: LIPIcs, Volume 369, 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026)

Abstract
A repeat is a substring that occurs at least twice in a string, and is called a maximal repeat if it cannot be extended outwards without reducing its frequency. Nishimoto and Tabei [CPM, 2021] proposed r-enum, an algorithm to enumerate various characteristic substrings, including maximal repeats, in a string T of length n in O(r) words of compressed working space, where r ≤ n is the number of runs in the Burrows-Wheeler transform (BWT) of T. Given the run-length encoded BWT (RLBWT) of T, r-enum runs in O(n log log_w (n/r)) time in addition to the time linear to the number of output strings, where w = Θ(log n) is the word size. In this paper, we first improve the O(n log log_w (n/r)) term to O(n). We next extend r-enum to compute other context-sensitive repeats such as near-supermaximal repeats (NSMRs) and supermaximal repeats, as well as the context diversity for every maximal repeat in the same complexities. Furthermore, we study net occurrences: An occurrence of a repeat is called a net occurrence if it is not covered by another repeat, and the net frequency of a repeat is the number of its net occurrences. With this terminology, an NSMR is a repeat with a positive net frequency. Given the RLBWT of T, we show how to compute the set 𝒮^{nsmr} of all NSMRs in T together with their net frequency/occurrences in O(n) time and O(r) space. We also show that an O(r)-space data structure can be built from the RLBWT to compute the net frequency/occurrences of any pattern in optimal time. The data structure is built in O(r) space and in O(n) time with high probability or deterministic O(n + |𝒮^{nsmr}| log log min(σ, |𝒮^{nsmr}|)) time, where σ ≤ r is the alphabet size of T. To achieve this, we prove that the total number of net occurrences is less than 2r. With the duality between net occurrences and minimal unique substrings (MUSs), we get a new upper bound 2r of the number of MUSs in T, which may be of independent interest.
Cite as

Kotaro Kimura and Tomohiro I. R-Enum Revisited: Speedup and Extension for Context-Sensitive Repeats and Net Frequencies. In 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 369, pp. 10:1-10:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{kimura_et_al:LIPIcs.CPM.2026.10,
  author =	{Kimura, Kotaro and I, Tomohiro},
  title =	{{R-Enum Revisited: Speedup and Extension for Context-Sensitive Repeats and Net Frequencies}},
  booktitle =	{37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026)},
  pages =	{10:1--10:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-420-8},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{369},
  editor =	{Bille, Philip and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2026.10},
  URN =		{urn:nbn:de:0030-drops-259361},
  doi =		{10.4230/LIPIcs.CPM.2026.10},
  annote =	{Keywords: Supermaximal repeats, Largest maximal repeats, Net frequencies, Run-length Burrows-Wheeler transform, Compressed data mining}
}
Document
DOI: 10.4230/LIPIcs.CPM.2026.8
Constant Multiplicative Sensitivity on the CDAWGs

Authors: Rikuya Hamai, Hiroto Fujimaru, and Shunsuke Inenaga

Published in: LIPIcs, Volume 369, 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026)

Abstract
Compact directed acyclic word graphs (CDAWGs) [Blumer et al. 1987] are a fundamental data structure on strings with applications in text pattern searching, data compression, and pattern discovery. Intuitively, the CDAWG of a string T is obtained by merging isomorphic subtrees of the suffix tree [Weiner 1973] of the same string T, and thus CDAWGs are a compact indexing structure. Indeed, the CDAWG size 𝖾 can be sublinear in n for some highly repetitive strings. Of its various applications, the CDAWG allows for computing pattern occurrences, maximal exact matches (MEMs), minimal absent words (MAWs), and minimal unique substrings (MUSs) in optimal time using O(𝖾) space. For designing space-efficient data storage, it is crucial that the underlying data structure is robust against data edits and errors. As a mathematical measure for this, the notion of compression sensitivity [Akagi et al. 2023] was introduced as the maximum of the size increase in the compressed data structures after edits operations. In this paper, we investigate the sensitivity of CDAWGs when a single character edit operation is performed at an arbitrary position in the input string T. We show that the size of the CDAWG after an edit operation on T is asymptotically at most 8 times larger than the original CDAWG before the edit. This O(1) upper bound significantly improves on the only known upper bound O(n/log n) for the problem.
Cite as

Rikuya Hamai, Hiroto Fujimaru, and Shunsuke Inenaga. Constant Multiplicative Sensitivity on the CDAWGs. In 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 369, pp. 8:1-8:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{hamai_et_al:LIPIcs.CPM.2026.8,
  author =	{Hamai, Rikuya and Fujimaru, Hiroto and Inenaga, Shunsuke},
  title =	{{Constant Multiplicative Sensitivity on the CDAWGs}},
  booktitle =	{37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026)},
  pages =	{8:1--8:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-420-8},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{369},
  editor =	{Bille, Philip and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2026.8},
  URN =		{urn:nbn:de:0030-drops-259345},
  doi =		{10.4230/LIPIcs.CPM.2026.8},
  annote =	{Keywords: string data structures, maximal repeats, data compression, compression sensitivity, CDAWGs}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.31
Delaunay Triangulations with Predictions

Authors: Sergio Cabello, Timothy M. Chan, and Panos Giannopoulos

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
We investigate algorithms with predictions in computational geometry, specifically focusing on the basic problem of computing 2D Delaunay triangulations. Given a set P of n points in the plane and a triangulation G that serves as a "prediction" of the Delaunay triangulation, we would like to use G to compute the correct Delaunay triangulation DT(P) more quickly when G is "close" to DT(P). We obtain a variety of results of this type, under different deterministic and probabilistic settings, including the following: 1) Define D to be the number of edges in G that are not in DT(P). We present a deterministic algorithm to compute DT(P) from G in O(n + Dlog³ n) time, and a randomized algorithm in O(n+Dlog n) expected time, the latter of which is optimal in terms of D. 2) Let R be a random subset of the edges of DT(P), where each edge is chosen independently with probability ρ. Suppose G is any triangulation of P that contains R. We present an algorithm to compute DT(P) from G in O(nlog log n + nlog(1/ρ)) time with high probability. 3) Define d_{vio} to be the maximum number of points of P strictly inside the circumcircle of a triangle in G (the number is 0 if G is equal to DT(P)). We present a deterministic algorithm to compute DT(P) from G in O(nlog^*n + nlog d_{vio}) time. We also obtain results in similar settings for related problems such as 2D Euclidean minimum spanning trees, and hope that our work will open up a fruitful line of future research.
Cite as

Sergio Cabello, Timothy M. Chan, and Panos Giannopoulos. Delaunay Triangulations with Predictions. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 31:1-31:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{cabello_et_al:LIPIcs.ITCS.2026.31,
  author =	{Cabello, Sergio and Chan, Timothy M. and Giannopoulos, Panos},
  title =	{{Delaunay Triangulations with Predictions}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{31:1--31:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.31},
  URN =		{urn:nbn:de:0030-drops-253186},
  doi =		{10.4230/LIPIcs.ITCS.2026.31},
  annote =	{Keywords: Delaunay Triangulation, Minimum Spanning Tree, Algorithms with Predictions}
}
Document
DOI: 10.4230/LIPIcs.IPEC.2025.29
Hitting Geodesic Intervals in Structurally Restricted Graphs

Authors: Tatsuya Gima, Yasuaki Kobayashi, Yuto Okada, Yota Otachi, and Hayato Takaike

Published in: LIPIcs, Volume 358, 20th International Symposium on Parameterized and Exact Computation (IPEC 2025)

Abstract
Given a graph G = (V,E), a set T of vertex pairs, and an integer k, Hitting Geodesic Intervals asks whether there is a set S ⊆ V of size at most k such that for each terminal pair {u,v} ∈ T, the set S intersects at least one shortest u-v path. Aravind and Saxena [WALCOM 2024] introduced this problem and showed several parameterized complexity results. In this paper, we extend the known results in both negative and positive directions and present sharp complexity contrasts with respect to structural graph parameters. We first show that the problem is NP-complete even on graphs with highly restricted shortest-path structures. More precisely, we show the NP-completeness on graphs obtained by adding a single vertex to a disjoint union of 5-vertex paths. By modifying the proof of this result, we also show the NP-completeness on graphs obtained from a path by adding one vertex and on graphs obtained from a disjoint union of triangles by adding one universal vertex. Furthermore, we show the NP-completeness on graphs of bandwidth 4 and maximum degree 5 by replacing the universal vertex in the last case with a long path. Under standard complexity assumptions, these negative results rule out fixed-parameter algorithms for most of the structural parameters studied in the literature (if the solution size k is not part of the parameter). We next present fixed-parameter algorithms parameterized by k plus modular-width and by k plus vertex integrity. The algorithm for the latter case does indeed solve a more general setting that includes the parameterization by the minimum vertex multiway-cut size of the terminal vertices. We show that this is tight in the sense that the problem parameterized by the minimum vertex multicut size of the terminal pairs is W[2]-complete. We then modify the proof of this intractability result and show that the problem is W[2]-complete parameterized by k even in the setting where T = binom(Q,2) for some Q ⊆ V.
Cite as

Tatsuya Gima, Yasuaki Kobayashi, Yuto Okada, Yota Otachi, and Hayato Takaike. Hitting Geodesic Intervals in Structurally Restricted Graphs. In 20th International Symposium on Parameterized and Exact Computation (IPEC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 358, pp. 29:1-29:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gima_et_al:LIPIcs.IPEC.2025.29,
  author =	{Gima, Tatsuya and Kobayashi, Yasuaki and Okada, Yuto and Otachi, Yota and Takaike, Hayato},
  title =	{{Hitting Geodesic Intervals in Structurally Restricted Graphs}},
  booktitle =	{20th International Symposium on Parameterized and Exact Computation (IPEC 2025)},
  pages =	{29:1--29:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-407-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{358},
  editor =	{Agrawal, Akanksha and van Leeuwen, Erik Jan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2025.29},
  URN =		{urn:nbn:de:0030-drops-251618},
  doi =		{10.4230/LIPIcs.IPEC.2025.29},
  annote =	{Keywords: Terminal monitoring set, Structural graph parameter, Geodesic interval}
}
Document
DOI: 10.4230/LIPIcs.IPEC.2025.4
On the Complexity of Secluded Path Problems

Authors: Tesshu Hanaka and Daisuke Tsuru

Published in: LIPIcs, Volume 358, 20th International Symposium on Parameterized and Exact Computation (IPEC 2025)

Abstract
This paper investigates the complexity of finding secluded paths in graphs. We focus on the Short Secluded Path problem and a natural new variant we introduce, Shortest Secluded Path. Formally, given an undirected graph G = (V, E), two vertices s,t ∈ V, and two integers k,l, the Short Secluded Path problem asks whether there exists an s-t path of length at most k with at most l neighbors. This problem is known to be computationally hard: it is W[1]-hard when parameterized by the path length k or by cliquewidth, and para-NP-complete when parameterized by the number l of neighbors. The fixed-parameter tractability is known for k+l or treewidth. In this paper, we expand the parameterized complexity landscape by designing (1) an XP algorithm parameterized by cliquewidth and (2) fixed-parameter algorithms parameterized by neighborhood diversity and twin cover number, respectively. As a byproduct, our results also provide parameterized algorithms for the classic s-t k-Path problem. Furthermore, we introduce the Shortest Secluded Path problem, which seeks a shortest s-t path with the minimum number of neighbors. In contrast to the hardness of the original problem, we reveal that this variant is solvable in polynomial time on unweighted graphs. We complete this by showing that for edge-weighted graphs, the problem becomes W[1]-hard yet remains in XP when parameterized by the shortest path distance between s and t.
Cite as

Tesshu Hanaka and Daisuke Tsuru. On the Complexity of Secluded Path Problems. In 20th International Symposium on Parameterized and Exact Computation (IPEC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 358, pp. 4:1-4:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{hanaka_et_al:LIPIcs.IPEC.2025.4,
  author =	{Hanaka, Tesshu and Tsuru, Daisuke},
  title =	{{On the Complexity of Secluded Path Problems}},
  booktitle =	{20th International Symposium on Parameterized and Exact Computation (IPEC 2025)},
  pages =	{4:1--4:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-407-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{358},
  editor =	{Agrawal, Akanksha and van Leeuwen, Erik Jan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2025.4},
  URN =		{urn:nbn:de:0030-drops-251361},
  doi =		{10.4230/LIPIcs.IPEC.2025.4},
  annote =	{Keywords: Secluded path, Parameterized complexity, Polynomial-time algorithm}
}
Document
Research
DOI: 10.4230/TGDK.3.3.4
Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web

Authors: Florian Ruosch, Cristina Sarasua, and Abraham Bernstein

Published in: TGDK, Volume 3, Issue 3 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 3

Abstract
In Argument Mining, predicting argumentative relations between texts (or spans) remains one of the most challenging aspects, even more so in the cross-document setting. This paper makes three key contributions to advance research in this domain. We first extend an existing dataset, the Sci-Arg corpus, by annotating it with explicit inter-document argumentative relations, thereby allowing arguments to be distributed over several documents forming an Argument Web; these new annotations are published using Semantic Web technologies (RDF, OWL). Second, we explore and evaluate three automated approaches for predicting these inter-document argumentative relations, establishing critical baselines on the new dataset. We find that a simple classifier based on discourse indicators with access to context outperforms neural methods. Third, we conduct a comparative analysis of these approaches for both intra- and inter-document settings, identifying statistically significant differences in results that indicate the necessity of distinguishing between these two scenarios. Our findings highlight significant challenges in this complex domain and open crucial avenues for future research on the Argument Web of Science, particularly for those interested in leveraging Semantic Web technologies and knowledge graphs to understand scholarly discourse. With this, we provide the first stepping stones in the form of a benchmark dataset, three baseline methods, and an initial analysis for a systematic exploration of this field relevant to the Web of Data and Science.
Cite as

Florian Ruosch, Cristina Sarasua, and Abraham Bernstein. Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 3, pp. 4:1-4:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{ruosch_et_al:TGDK.3.3.4,
  author =	{Ruosch, Florian and Sarasua, Cristina and Bernstein, Abraham},
  title =	{{Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{4:1--4:33},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{3},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.3.4},
  URN =		{urn:nbn:de:0030-drops-252159},
  doi =		{10.4230/TGDK.3.3.4},
  annote =	{Keywords: Argument Mining, Large Language Models, Knowledge Graphs, Link Prediction}
}
Document
DOI: 10.4230/LIPIcs.GD.2025.17
Visualizing Treewidth

Authors: Alvin Chiu, Thomas Depian, David Eppstein, Michael T. Goodrich, and Martin Nöllenburg

Published in: LIPIcs, Volume 357, 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)

Abstract
A witness drawing of a graph is a visualization that clearly shows a given property of a graph. We study and implement various drawing paradigms for witness drawings to clearly show that graphs have bounded pathwidth or treewidth. Our approach draws the tree decomposition or path decomposition as a tree of bags, with induced subgraphs shown in each bag, and with "tracks" for each graph vertex connecting its copies in multiple bags. Within bags, we optimize the vertex layout to avoid crossings of edges and tracks. We implement a visualization prototype for crossing minimization using dynamic programming for graphs of small width and heuristic approaches for graphs of larger width. We introduce a taxonomy of drawing styles, which render the subgraph for each bag as an arc diagram with one or two pages or as a circular layout with straight-line edges, and we render tracks either with straight lines or with orbital-radial paths.
Cite as

Alvin Chiu, Thomas Depian, David Eppstein, Michael T. Goodrich, and Martin Nöllenburg. Visualizing Treewidth. In 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 357, pp. 17:1-17:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chiu_et_al:LIPIcs.GD.2025.17,
  author =	{Chiu, Alvin and Depian, Thomas and Eppstein, David and Goodrich, Michael T. and N\"{o}llenburg, Martin},
  title =	{{Visualizing Treewidth}},
  booktitle =	{33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)},
  pages =	{17:1--17:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-403-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{357},
  editor =	{Dujmovi\'{c}, Vida and Montecchiani, Fabrizio},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GD.2025.17},
  URN =		{urn:nbn:de:0030-drops-250034},
  doi =		{10.4230/LIPIcs.GD.2025.17},
  annote =	{Keywords: Graph drawing, witness drawings, pathwidth, treewidth}
}
Document
DOI: 10.4230/LIPIcs.GD.2025.3
On the Structure of Normalized Models of Circular-Arc Graphs I. Hsu’s Approach

Authors: Tomasz Krawczyk

Published in: LIPIcs, Volume 357, 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)

Abstract
In the work [𝒪(m⋅ n) algorithms for the recognition and isomorphism problems on circular-arc graphs, SIAM J. Comput. 24(3), 411-439, (1995)], Wen-Lian Hsu claims three results concerning the class of circular-arc graphs: - the design of so-called decomposition trees that represent the structure of all normalized intersection models of circular-arc graphs, - an 𝒪(nm)-time recognition algorithm for circular-arc graphs, - an 𝒪(nm)-time isomorphism algorithm for circular-arc graphs. In [Discrete Math. Theor. Comput. Sci., 15(1), 157-182, 2013] Curtis, Lin, McConnell, Nussbaum, Soulignac, Spinrad, and Szwarcfiter showed that Hsu’s isomorphism algorithm is incorrect. In this note, we show that the other two results - namely, the construction of decomposition trees and the recognition algorithm - are also flawed. We also present the main ideas that made it possible to construct a data structure that maintains normalized models of circular-arc graphs.
Cite as

Tomasz Krawczyk. On the Structure of Normalized Models of Circular-Arc Graphs I. Hsu’s Approach. In 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 357, pp. 3:1-3:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{krawczyk:LIPIcs.GD.2025.3,
  author =	{Krawczyk, Tomasz},
  title =	{{On the Structure of Normalized Models of Circular-Arc Graphs I. Hsu’s Approach}},
  booktitle =	{33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)},
  pages =	{3:1--3:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-403-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{357},
  editor =	{Dujmovi\'{c}, Vida and Montecchiani, Fabrizio},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GD.2025.3},
  URN =		{urn:nbn:de:0030-drops-249892},
  doi =		{10.4230/LIPIcs.GD.2025.3},
  annote =	{Keywords: intersection graphs and models, circular-arc graphs and circular-arc intersection models}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.67
Compact Representation of Semilinear and Terrain-Like Graphs

Authors: Jean Cardinal and Yelena Yuditsky

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
We consider the existence and construction of biclique covers of graphs, consisting of coverings of their edge sets by complete bipartite graphs. The size of such a cover is the sum of the sizes of the bicliques. Small-size biclique covers of graphs are ubiquitous in computational geometry, and have been shown to be useful compact representations of graphs. We give a brief survey of classical and recent results on biclique covers and their applications, and give new families of graphs having biclique covers of near-linear size. In particular, we show that semilinear graphs, whose edges are defined by linear relations in bounded dimensional space, always have biclique covers of size O(npolylog n). This generalizes many previously known results on special classes of graphs including interval graphs, permutation graphs, and graphs of bounded boxicity, but also new classes such as intersection graphs of L-shapes in the plane. It also directly implies the bounds for Zarankiewicz’s problem derived by Basit, Chernikov, Starchenko, Tao, and Tran (Forum Math. Sigma, 2021). We also consider capped graphs, also known as terrain-like graphs, defined as ordered graphs forbidding a certain ordered pattern on four vertices. Terrain-like graphs contain the induced subgraphs of terrain visibility graphs. We give an elementary proof that these graphs admit biclique partitions of size O(nlog³ n). This provides a simple combinatorial analogue of a classical result from Agarwal, Alon, Aronov, and Suri on polygon visibility graphs (Discrete Comput. Geom. 1994). Finally, we prove that there exists families of unit disk graphs on n vertices that do not admit biclique coverings of size o(n^{4/3}), showing that we are unlikely to improve on Szemerédi-Trotter type incidence bounds for higher-degree semialgebraic graphs.
Cite as

Jean Cardinal and Yelena Yuditsky. Compact Representation of Semilinear and Terrain-Like Graphs. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 67:1-67:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{cardinal_et_al:LIPIcs.ESA.2025.67,
  author =	{Cardinal, Jean and Yuditsky, Yelena},
  title =	{{Compact Representation of Semilinear and Terrain-Like Graphs}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{67:1--67:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.67},
  URN =		{urn:nbn:de:0030-drops-245359},
  doi =		{10.4230/LIPIcs.ESA.2025.67},
  annote =	{Keywords: Biclique covers, intersection graphs, visibility graphs, Zarankiewicz’s problem}
}
Document
DOI: 10.4230/LIPIcs.ITP.2025.36
Verifying Datalog Reasoning with Lean

Authors: Johannes Tantow, Lukas Gerlach, Stephan Mennicke, and Markus Krötzsch

Published in: LIPIcs, Volume 352, 16th International Conference on Interactive Theorem Proving (ITP 2025)

Abstract
Datalog is an essential logical rule language with many applications, and modern rule engines compute logical consequences for Datalog with high performance and scalability. While Datalog is rather simple and, in principle, explainable by design, such sophisticated implementations and optimizations are hard to verify. We therefore propose a certificate-based approach to validate results of Datalog reasoners in a formally verified checker for Datalog proofs. Using the proof assistant Lean, we implement such a checker and verify its correctness against direct formalizations of the Datalog semantics. We propose two JSON encodings for Datalog proofs: one using the widely supported Datalog proof trees, and one using directed acyclic graphs for succinctness. To evaluate the practical feasibility and performance of our approach, we validate proofs that we obtain by converting derivation traces of an existing Datalog reasoner into our tool-independent format.
Cite as

Johannes Tantow, Lukas Gerlach, Stephan Mennicke, and Markus Krötzsch. Verifying Datalog Reasoning with Lean. In 16th International Conference on Interactive Theorem Proving (ITP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 352, pp. 36:1-36:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{tantow_et_al:LIPIcs.ITP.2025.36,
  author =	{Tantow, Johannes and Gerlach, Lukas and Mennicke, Stephan and Kr\"{o}tzsch, Markus},
  title =	{{Verifying Datalog Reasoning with Lean}},
  booktitle =	{16th International Conference on Interactive Theorem Proving (ITP 2025)},
  pages =	{36:1--36:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-396-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{352},
  editor =	{Forster, Yannick and Keller, Chantal},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2025.36},
  URN =		{urn:nbn:de:0030-drops-246342},
  doi =		{10.4230/LIPIcs.ITP.2025.36},
  annote =	{Keywords: Certifying Algorithms, Datalog, Formal Verification}
}
Document
Research
DOI: 10.4230/OASIcs.Grossi.14
Specific Patterns Against Reference Sequences

Authors: Marie-Pierre Béal and Maxime Crochemore

Published in: OASIcs, Volume 132, From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday (2025)

Abstract
We design alignment-free techniques for comparing a set of sequences or just a word, called a target, against another set of words, called a reference. This is done with the detection of factor patterns that distinguish the target from the reference. A target-specific factor of a target T against a reference R is then a factor w of a word in T that is not a factor of a word in R but whose proper factors of w are factors of a word in R. The strategy is based on the notion of minimal absent/forbidden words. We first address the computation of the set of target-specific factors of a target T against a reference R, where T and R are finite sets of sequences. The result is the construction of an automaton accepting the set of all considered target-specific factors. The construction algorithm runs in linear time according to the size of T ∪ R. The second result is the design of an algorithm to compute all the occurrences in a single sequence T of its target-specific factors against a reference R. The algorithm runs in real-time on the target sequence, independently of the number of occurrences of target-specific factors.
Cite as

Marie-Pierre Béal and Maxime Crochemore. Specific Patterns Against Reference Sequences. In From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 132, pp. 14:1-14:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{beal_et_al:OASIcs.Grossi.14,
  author =	{B\'{e}al, Marie-Pierre and Crochemore, Maxime},
  title =	{{Specific Patterns Against Reference Sequences}},
  booktitle =	{From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday},
  pages =	{14:1--14:12},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-391-1},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{132},
  editor =	{Conte, Alessio and Marino, Andrea and Rosone, Giovanna and Vitter, Jeffrey Scott},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Grossi.14},
  URN =		{urn:nbn:de:0030-drops-238130},
  doi =		{10.4230/OASIcs.Grossi.14},
  annote =	{Keywords: Specific pattern, Minimal absent word, Minimal forbidden word, Directed Acyclic Word Graph (DAWG), Suffix automaton}
}
Document
DOI: 10.4230/OASIcs.Manzini.1
BWT and Combinatorics on Words

Authors: Gabriele Fici, Sabrina Mantaci, Antonio Restivo, Giuseppe Romana, Giovanna Rosone, and Marinella Sciortino

Published in: OASIcs, Volume 131, The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday (2025)

Abstract
The Burrows-Wheeler Transform (BWT) is a reversible transformation on words (strings) introduced in 1994 in the context of data compression, which is a permutation of the characters in the word. Its clustering effect, i.e., the remarkable property of grouping identical characters (BWT runs) when they share common contexts, has made it a powerful tool for boosting compression performances and enabling efficient pattern searching in highly repetitive string collections. In this chapter, we analyze the Burrows-Wheeler transform under the combinatorial point of view, and we survey known properties and connections with different aspects of combinatorics on words. In particular, we focus on the properties of words in relation to the number of their BWT runs. The value r, which counts the number of BWT runs, impacts both compression performance and indexing efficiency, and is considered a measure to evaluate the above-mentioned clustering effect and, consequently, the repetitiveness of a word. We give an overview of the results relating r to other combinatorial repetitiveness measures related to the factor complexity. The chapter also explores extremal cases of the clustering effect. Finally, some results on the sensitivity of the measure r are considered, where the effects of combinatorial operations are studied, such as reversal, edits, and the application of morphisms.
Cite as

Gabriele Fici, Sabrina Mantaci, Antonio Restivo, Giuseppe Romana, Giovanna Rosone, and Marinella Sciortino. BWT and Combinatorics on Words. In The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 131, pp. 1:1-1:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{fici_et_al:OASIcs.Manzini.1,
  author =	{Fici, Gabriele and Mantaci, Sabrina and Restivo, Antonio and Romana, Giuseppe and Rosone, Giovanna and Sciortino, Marinella},
  title =	{{BWT and Combinatorics on Words}},
  booktitle =	{The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday},
  pages =	{1:1--1:23},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-390-4},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{131},
  editor =	{Ferragina, Paolo and Gagie, Travis and Navarro, Gonzalo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Manzini.1},
  URN =		{urn:nbn:de:0030-drops-239090},
  doi =		{10.4230/OASIcs.Manzini.1},
  annote =	{Keywords: Burrows-Wheeler Transform, Combinatorics on Words, Clustering Effect, BWT Runs}
}
Document
DOI: 10.4230/LIPIcs.SAT.2025.32
Efficient Certified Reasoning for Binarized Neural Networks

Authors: Jiong Yang, Yong Kiam Tan, Mate Soos, Magnus O. Myreen, and Kuldeep S. Meel

Published in: LIPIcs, Volume 341, 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)

Abstract
Neural networks have emerged as essential components in safety-critical applications - these use cases demand complex, yet trustworthy computations. Binarized Neural Networks (BNNs) are a type of neural network where each neuron is constrained to a Boolean value; they are particularly well-suited for safety-critical tasks because they retain much of the computational capacities of full-scale (floating-point or quantized) deep neural networks, but remain compatible with satisfiability solvers for qualitative verification and with model counters for quantitative reasoning. However, existing methods for BNN analysis suffer from either limited scalability or susceptibility to soundness errors, which hinders their applicability in real-world scenarios. In this work, we present a scalable and trustworthy approach for both qualitative and quantitative verification of BNNs. Our approach introduces a native representation of BNN constraints in a custom-designed solver for qualitative reasoning, and in an approximate model counter for quantitative reasoning. We further develop specialized proof generation and checking pipelines with native support for BNN constraint reasoning, ensuring trustworthiness for all of our verification results. Empirical evaluations on a BNN robustness verification benchmark suite demonstrate that our certified solving approach achieves a 9× speedup over prior certified CNF and PB-based approaches, and our certified counting approach achieves a 218× speedup over the existing CNF-based baseline. In terms of coverage, our pipeline produces fully certified results for 99% and 86% of the qualitative and quantitative reasoning queries on BNNs, respectively. This is in sharp contrast to the best existing baselines which can fully certify only 62% and 4% of the queries, respectively.
Cite as

Jiong Yang, Yong Kiam Tan, Mate Soos, Magnus O. Myreen, and Kuldeep S. Meel. Efficient Certified Reasoning for Binarized Neural Networks. In 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 341, pp. 32:1-32:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{yang_et_al:LIPIcs.SAT.2025.32,
  author =	{Yang, Jiong and Tan, Yong Kiam and Soos, Mate and Myreen, Magnus O. and Meel, Kuldeep S.},
  title =	{{Efficient Certified Reasoning for Binarized Neural Networks}},
  booktitle =	{28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)},
  pages =	{32:1--32:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-381-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{341},
  editor =	{Berg, Jeremias and Nordstr\"{o}m, Jakob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAT.2025.32},
  URN =		{urn:nbn:de:0030-drops-237665},
  doi =		{10.4230/LIPIcs.SAT.2025.32},
  annote =	{Keywords: Neural network verification, proof certification, SAT solving, approximate model counting}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.86
Optimal Distance Labeling for Permutation Graphs

Authors: Paweł Gawrychowski and Wojciech Janczewski

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
A permutation graph is the intersection graph of a set of segments between two parallel lines. In other words, they are defined by a permutation π on n elements, such that u and v are adjacent if an only if u < v but π(u) > π(v). We consider the problem of computing the distances in such a graph in the setting of informative labeling schemes. The goal of such a scheme is to assign a short bitstring 𝓁(u) to every vertex u, such that the distance between u and v can be computed using only 𝓁(u) and 𝓁(v), and no further knowledge about the whole graph (other than that it is a permutation graph). This elegantly captures the intuition that we would like our data structure to be distributed, and often leads to interesting combinatorial challenges while trying to obtain lower and upper bounds that match up to the lower-order terms. For distance labeling of permutation graphs on n vertices, Katz, Katz, and Peleg [STACS 2000] showed how to construct labels consisting of 𝒪(log² n) bits. Later, Bazzaro and Gavoille [Discret. Math. 309(11)] obtained an asymptotically optimal bound by showing how to construct labels consisting of 9log{n}+𝒪(1) bits, and proving that 3log{n}-𝒪(log{log{n}}) bits are necessary. This however leaves a quite large gap between the known lower and upper bounds. We close this gap by showing how to construct labels consisting of 3log{n}+𝒪(1) bits.
Cite as

Paweł Gawrychowski and Wojciech Janczewski. Optimal Distance Labeling for Permutation Graphs. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 86:1-86:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gawrychowski_et_al:LIPIcs.ICALP.2025.86,
  author =	{Gawrychowski, Pawe{\l} and Janczewski, Wojciech},
  title =	{{Optimal Distance Labeling for Permutation Graphs}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{86:1--86:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.86},
  URN =		{urn:nbn:de:0030-drops-234632},
  doi =		{10.4230/LIPIcs.ICALP.2025.86},
  annote =	{Keywords: informative labeling, permutation graph, distance labeling}
}
Document
Media Exposition
DOI: 10.4230/LIPIcs.SoCG.2025.84
Incremental and Interactive PQ- and PC-Trees (Media Exposition)

Authors: Simon D. Fink and Dominik Peters

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract
PQ-trees [Booth, 1975; Kellogg S. Booth and George S. Lueker, 1976] (and their more general variant PC-trees [Hsu and McConnell, 2003; Wei-Kuan and Wen-Lian, 1999]) are a well-known data structure for representing the set of linear (or for PC-trees, circular) orders respecting a given set of consecutivity constraints. Each such constraint is specified by a set of elements and requires that these elements appear consecutively in the linear (or circular) order; thus, they disallow the set to be interleaved with its complement. The main operation supported by these data structures is thus the so-called update, which takes as input a set that forms an additional constraint, and in response changes the tree in order to restrict the represented orders to those satisfying the new constraint. Interpreting a given tree is straightforward: leaves represent the underlying elements, while inner nodes either allow the order of their subtrees to be reversed (Q/C-nodes) or to be arbitrarily permuted (P-nodes). However, the way this structure and the set of represented orders change under updates is less intuitive. We present an interactive web app that allows users to specify sets of consecutivity constraints in the form of a 0/1-matrix and then calculates and visualizes the corresponding PQ- or PC-tree. The constraints can then be changed dynamically while observing how this changes the structure of the tree and the set of represented orders. Through this interactive exploration, we hope to make PQ- and PC-trees more accessible to a wider audience.
Cite as

Simon D. Fink and Dominik Peters. Incremental and Interactive PQ- and PC-Trees (Media Exposition). In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 84:1-84:4, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{fink_et_al:LIPIcs.SoCG.2025.84,
  author =	{Fink, Simon D. and Peters, Dominik},
  title =	{{Incremental and Interactive PQ- and PC-Trees}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{84:1--84:4},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.84},
  URN =		{urn:nbn:de:0030-drops-232365},
  doi =		{10.4230/LIPIcs.SoCG.2025.84},
  annote =	{Keywords: PQ trees, PC trees, planarity, consecutive ones problem, interactive exploration}
}
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