27 Search Results for "Barbay, Jérémy"

Document
DOI: 10.4230/LIPIcs.SoCG.2026.60
Space-Efficient Approximate Spherical Range Counting in High Dimensions

Authors: Andreas Kalavas and Ioannis Psarros

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)

Abstract
We study the following range searching problem in high-dimensional Euclidean spaces: given a finite set P ⊂ ℝ^d, where each p ∈ P is assigned a weight w_p, and radius r > 0, we need to preprocess P into a data structure such that when a new query point q ∈ ℝ^d arrives, the data structure reports the cumulative weight of points of P within Euclidean distance r from q. Solving the problem exactly seems to require space usage that is exponential to the dimension, a phenomenon known as the curse of dimensionality. Thus, we focus on approximate solutions where points up to (1+ε)r away from q may be taken into account, where ε > 0 is an input parameter known during preprocessing. We build a data structure with near-linear space usage, and query time in n^{1-Θ(ε⁴/log(1/ε))}+t_q^ϱ⋅n^{1-ϱ}, for some ϱ = Θ(ε²), where t_q is the number of points of P in the ambiguity zone, i.e., at distance between r and (1+ε)r from the query q. To the best of our knowledge, this is the first data structure with efficient space usage (subquadratic or near-linear for any ε > 0) and query time that remains sublinear for any sublinear t_q. We supplement our worst-case bounds with a query-driven preprocessing algorithm to build data structures that are well-adapted to the query distribution.
Cite as

Andreas Kalavas and Ioannis Psarros. Space-Efficient Approximate Spherical Range Counting in High Dimensions. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 60:1-60:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{kalavas_et_al:LIPIcs.SoCG.2026.60,
  author =	{Kalavas, Andreas and Psarros, Ioannis},
  title =	{{Space-Efficient Approximate Spherical Range Counting in High Dimensions}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{60:1--60:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.60},
  URN =		{urn:nbn:de:0030-drops-258670},
  doi =		{10.4230/LIPIcs.SoCG.2026.60},
  annote =	{Keywords: Approximate range counting, partition trees, high dimensions}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.31
Delaunay Triangulations with Predictions

Authors: Sergio Cabello, Timothy M. Chan, and Panos Giannopoulos

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
We investigate algorithms with predictions in computational geometry, specifically focusing on the basic problem of computing 2D Delaunay triangulations. Given a set P of n points in the plane and a triangulation G that serves as a "prediction" of the Delaunay triangulation, we would like to use G to compute the correct Delaunay triangulation DT(P) more quickly when G is "close" to DT(P). We obtain a variety of results of this type, under different deterministic and probabilistic settings, including the following: 1) Define D to be the number of edges in G that are not in DT(P). We present a deterministic algorithm to compute DT(P) from G in O(n + Dlog³ n) time, and a randomized algorithm in O(n+Dlog n) expected time, the latter of which is optimal in terms of D. 2) Let R be a random subset of the edges of DT(P), where each edge is chosen independently with probability ρ. Suppose G is any triangulation of P that contains R. We present an algorithm to compute DT(P) from G in O(nlog log n + nlog(1/ρ)) time with high probability. 3) Define d_{vio} to be the maximum number of points of P strictly inside the circumcircle of a triangle in G (the number is 0 if G is equal to DT(P)). We present a deterministic algorithm to compute DT(P) from G in O(nlog^*n + nlog d_{vio}) time. We also obtain results in similar settings for related problems such as 2D Euclidean minimum spanning trees, and hope that our work will open up a fruitful line of future research.
Cite as

Sergio Cabello, Timothy M. Chan, and Panos Giannopoulos. Delaunay Triangulations with Predictions. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 31:1-31:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{cabello_et_al:LIPIcs.ITCS.2026.31,
  author =	{Cabello, Sergio and Chan, Timothy M. and Giannopoulos, Panos},
  title =	{{Delaunay Triangulations with Predictions}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{31:1--31:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.31},
  URN =		{urn:nbn:de:0030-drops-253186},
  doi =		{10.4230/LIPIcs.ITCS.2026.31},
  annote =	{Keywords: Delaunay Triangulation, Minimum Spanning Tree, Algorithms with Predictions}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.55
Universally Optimal Streaming Algorithm for Random Walks in Dense Graphs

Authors: Klim Efremenko, Gillat Kol, Raghuvansh R. Saxena, and Zhijun Zhang

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
Sampling a random walk is a fundamental primitive in many graph applications. In the streaming model, it is known that sampling an L-step random walk on an n-vertex directed graph requires Ω(n L) space, implying that no sublinear-space streaming algorithm exists for general graphs. We show that sublinear algorithms are possible for the case of dense graphs, where every vertex has out-degree at least Ω(n). In particular, we give a one-pass turnstile streaming algorithm that uses only 𝒪̃(L) memory for such graphs. More broadly, for graphs with minimum out-degree at least d, our streaming algorithm samples a random walk using 𝒪̃(n/d ⋅ L) memory. We show that our algorithm is optimal in a strong "beyond worst-case" sense. To formalize this, we introduce the notion of universal optimality for graph streaming algorithms. Informally, a streaming algorithm is universally optimal if it performs (almost) as well as possible on every graph, assuming a worst-case choice of the streaming order. This notion of universal optimality is a key conceptual contribution of our work.
Cite as

Klim Efremenko, Gillat Kol, Raghuvansh R. Saxena, and Zhijun Zhang. Universally Optimal Streaming Algorithm for Random Walks in Dense Graphs. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 55:1-55:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{efremenko_et_al:LIPIcs.ITCS.2026.55,
  author =	{Efremenko, Klim and Kol, Gillat and Saxena, Raghuvansh R. and Zhang, Zhijun},
  title =	{{Universally Optimal Streaming Algorithm for Random Walks in Dense Graphs}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{55:1--55:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.55},
  URN =		{urn:nbn:de:0030-drops-253423},
  doi =		{10.4230/LIPIcs.ITCS.2026.55},
  annote =	{Keywords: Random Walk, streaming Algorithm, universal Optimality}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.102
A Combinatorial Proof of Universal Optimality for Computing a Planar Convex Hull

Authors: Ivor van der Hoog, Eva Rotenberg, and Daniel Rutschmann

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
For a planar point set P, its convex hull is the smallest convex polygon that encloses all points in P. The construction of the convex hull from an array I_P containing P is a fundamental problem in computational geometry. By sorting I_P in lexicographical order, one can construct the convex hull of P in O(n log n) time which is worst-case optimal. Standard worst-case analysis, however, has been criticized as overly coarse or pessimistic, and researchers search for more refined analyses. For an algorithm A, worst-case analysis fixes n, and considers the maximum running time of A across all size-n point sets P and permutations I_P of P. Output-sensitive analysis fixes n and k, and considers the maximum running time across all size-n points sets P with k hull points and permutations I_P of P. Universal analysis provides an even stronger guarantee. It fixes a point set P and considers the maximum running time across all permutations I_P of P. Kirkpatrick, McQueen, and Seidel [SICOMP'86] consider output-sensitive analysis. If the convex hull of P contains k points, then their algorithm runs in O(n log k) time. Afshani, Barbay, Chan [FOCS'07] prove that the algorithm by Kirkpatrick, McQueen, and Seidel is also universally optimal. Their proof restricts the model of computation to any algebraic decision tree model where the test functions have at most constant degree and at most a constant number of arguments. They rely upon involved algebraic arguments to construct a lower bound for each point set P that matches the universal running time of [SICOMP'86]. We provide a different proof of universal optimality. Instead of restricting the computational model, we further specify the output. We require as output (1) the convex hull, and (2) for each internal point of P a witness for it being internal. Our argument is shorter, perhaps simpler, and applicable in more general models of computation.
Cite as

Ivor van der Hoog, Eva Rotenberg, and Daniel Rutschmann. A Combinatorial Proof of Universal Optimality for Computing a Planar Convex Hull. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 102:1-102:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{vanderhoog_et_al:LIPIcs.ESA.2025.102,
  author =	{van der Hoog, Ivor and Rotenberg, Eva and Rutschmann, Daniel},
  title =	{{A Combinatorial Proof of Universal Optimality for Computing a Planar Convex Hull}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{102:1--102:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.102},
  URN =		{urn:nbn:de:0030-drops-245715},
  doi =		{10.4230/LIPIcs.ESA.2025.102},
  annote =	{Keywords: Convex hull, Combinatorial proofs, Universal optimality}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.25
Instance-Optimal Imprecise Convex Hull

Authors: Sarita de Berg, Ivor van der Hoog, Eva Rotenberg, Daniel Rutschmann, and Sampson Wong

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Imprecise measurements of a point set P = (p₁, …, p_n) can be modelled by a family of regions F = (R₁, …, R_n), where each imprecise region R_i ∈ F contains a unique point p_i ∈ P. A retrieval models an accurate measurement by replacing an imprecise region R_i with its corresponding point p_i. We construct the convex hull of an imprecise point set in the plane, by determining the cyclic ordering of the convex hull vertices of P as efficiently as possible. Efficiency is interpreted in two ways: (i) minimising the number of retrievals, and (ii) the computation time to determine the set of regions that must be retrieved. Previous works focused on only one of these two aspects: either minimising retrievals or optimising algorithmic runtime. Our contribution is the first to simultaneously achieve both. Let r(F, P) denote the minimal number of retrievals required by any algorithm to determine the convex hull of P for a given instance (F, P). For a family F of n constant-complexity polygons, our main result is a reconstruction algorithm that performs Θ(r(F, P)) retrievals in O(r(F, P) log³ n) time. Compared to previous approaches that achieve optimal retrieval counts, we improve the runtime per retrieval from polynomial to polylogarithmic. We extend the generality of previous results to simple k-gons, to pairwise disjoint disks with radii in [1,k], and to unit disks where at most k disks overlap in a single point. Our runtime scales linearly with k.
Cite as

Sarita de Berg, Ivor van der Hoog, Eva Rotenberg, Daniel Rutschmann, and Sampson Wong. Instance-Optimal Imprecise Convex Hull. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 25:1-25:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{deberg_et_al:LIPIcs.ESA.2025.25,
  author =	{de Berg, Sarita and van der Hoog, Ivor and Rotenberg, Eva and Rutschmann, Daniel and Wong, Sampson},
  title =	{{Instance-Optimal Imprecise Convex Hull}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{25:1--25:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.25},
  URN =		{urn:nbn:de:0030-drops-244932},
  doi =		{10.4230/LIPIcs.ESA.2025.25},
  annote =	{Keywords: convex hull, imprecise geometry preprocessing model, partial information}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.87
Lazy B-Trees

Authors: Casper Moldrup Rysgaard and Sebastian Wild

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
Lazy search trees (Sandlund & Wild FOCS 2020, Sandlund & Zhang SODA 2022) are sorted dictionaries whose update and query performance smoothly interpolates between that of efficient priority queues and binary search trees - automatically, depending on actual use; no adjustments are necessary to the data structure to realize the cost savings. In this paper, we design lazy B-trees, a variant of lazy search trees suitable for external memory that generalizes the speedup of B-trees over binary search trees wrt. input/output operations to the same smooth interpolation regime. A key technical difficulty to overcome is the lack of a (fully satisfactory) external variant of biased search trees, on which lazy search trees crucially rely. We give a construction for a subset of performance guarantees sufficient to realize external-memory lazy search trees, which we deem of independent interest. As one special case, lazy B-trees can be used as an external-memory priority queue, in which case they are competitive with some tailor-made heaps; indeed, they offer faster decrease-key and insert operations than known data structures.
Cite as

Casper Moldrup Rysgaard and Sebastian Wild. Lazy B-Trees. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 87:1-87:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{rysgaard_et_al:LIPIcs.MFCS.2025.87,
  author =	{Rysgaard, Casper Moldrup and Wild, Sebastian},
  title =	{{Lazy B-Trees}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{87:1--87:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.87},
  URN =		{urn:nbn:de:0030-drops-241949},
  doi =		{10.4230/LIPIcs.MFCS.2025.87},
  annote =	{Keywords: B-tree, lazy search trees, lazy updates, external memory, deferred data structures, database cracking}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.6
Fast Pseudoalignment Queries on Compressed Colored de Bruijn Graphs

Authors: Alessio Campanelli, Giulio Ermanno Pibiri, and Rob Patro

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Motivation. Indexes for the colored de Bruijn graph (c-dBG) play a crucial role in computational biology by facilitating complex tasks such as read mapping and assembly. These indexes map k-mers (substrings of length k) appearing in a large collection of reference strings to the set of identifiers of the strings where they appear. These sets, colloquially referred to as color sets, tend to occupy large quantities of memory, especially for large pangenomes. Our previous work thus focused on leveraging the repetitiveness of the color sets to improve the space effectiveness of the resulting index. As a matter of fact, repetition-aware indexes can be up to one order of magnitude smaller on large pangenomes compared to indexes that do not exploit such repetitiveness. Such improved space effectiveness, on the other hand, imposes an overhead at query time when performing tasks such as pseudoalignment that require the collection and processing of multiple related color sets. Methods. In this paper, we show how to avoid this overhead. We devise novel query algorithms tailored for the specific repetition-aware representations adopted by the Fulgor index, a state-of-the-art c-dBG index, to significantly improve its pseudoalignment efficiency and without consuming additional space. Results. Our results indicate that with increasing redundancy in the pangenomes, the compression factor provided by the Fulgor index increases, while the relative query time actually reduces. For example, while the space of the Fulgor index improves by 2.5× with repetition-aware compression and its query time improves by 1.6× on a collection of 5,000 Salmonella Enterica genomes, these factors become (6.1×,2.8×) and (11.2×,3.2×) for 50,000 and 150,000 genomes respectively. For an even larger collection of 300,000 genomes, we obtained an index that is 22.3× smaller and 2.2× faster.
Cite as

Alessio Campanelli, Giulio Ermanno Pibiri, and Rob Patro. Fast Pseudoalignment Queries on Compressed Colored de Bruijn Graphs. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 6:1-6:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{campanelli_et_al:LIPIcs.WABI.2025.6,
  author =	{Campanelli, Alessio and Pibiri, Giulio Ermanno and Patro, Rob},
  title =	{{Fast Pseudoalignment Queries on Compressed Colored de Bruijn Graphs}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{6:1--6:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.6},
  URN =		{urn:nbn:de:0030-drops-239327},
  doi =		{10.4230/LIPIcs.WABI.2025.6},
  annote =	{Keywords: Colored de Bruijn graphs, Pseudoalignment, Repetition-aware compression}
}
Document
Research
DOI: 10.4230/OASIcs.Grossi.12
Encoding Data Structures for Range Queries on Arrays

Authors: Seungbum Jo and Srinivasa Rao Satti

Published in: OASIcs, Volume 132, From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday (2025)

Abstract
Efficiently processing range queries on arrays is a fundamental problem in computer science, with applications spanning diverse domains such as database management, computational biology, and geographic information systems. A range query retrieves information about a specific segment of an array, such as the sum, minimum, maximum, or median of elements within a given range. The challenge lies in designing data structures that allow such queries to be answered quickly, often in constant or logarithmic time, while keeping space overhead (and preprocessing time) small. Encoding data structures for range queries has emerged as a pivotal area of research due to the increasing demand for high-performance systems handling massive datasets. These structures consider the data together with the queries and aim to store only as much information about the data as is needed to answer the queries. The data structure does not need to access the original data to answer the queries. Encoding-based solutions often leverage techniques from succinct data structures, bit manipulation, and combinatorial optimization to achieve both space and time efficiency. By encoding the array in a manner that preserves critical information, these methods strike a balance between query time and space usage. In this survey article, we explore the landscape of encoding data structures for range queries on arrays, providing a comprehensive overview of some important results on space-efficient encodings for various types of range query.
Cite as

Seungbum Jo and Srinivasa Rao Satti. Encoding Data Structures for Range Queries on Arrays. In From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 132, pp. 12:1-12:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{jo_et_al:OASIcs.Grossi.12,
  author =	{Jo, Seungbum and Satti, Srinivasa Rao},
  title =	{{Encoding Data Structures for Range Queries on Arrays}},
  booktitle =	{From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday},
  pages =	{12:1--12:12},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-391-1},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{132},
  editor =	{Conte, Alessio and Marino, Andrea and Rosone, Giovanna and Vitter, Jeffrey Scott},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Grossi.12},
  URN =		{urn:nbn:de:0030-drops-238116},
  doi =		{10.4230/OASIcs.Grossi.12},
  annote =	{Keywords: range queries, RMQ, Cartesian tree, top-k queries, range median, range mode}
}
Document
Research
DOI: 10.4230/OASIcs.Grossi.15
Wavelet Tree, Part I: A Brief History

Authors: Paolo Ferragina, Raffaele Giancarlo, Giovanni Manzini, Giovanna Rosone, Rossano Venturini, and Jeffrey Scott Vitter

Published in: OASIcs, Volume 132, From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday (2025)

Abstract
The Wavelet Tree data structure introduced in Grossi, Gupta, and Vitter [Grossi et al., 2003] is a space-efficient technique for rank and select queries that generalizes from binary symbols to an arbitrary multisymbol alphabet. Over the last two decades, it has become a pivotal tool in modern full-text indexing and data compression because of its properties and capabilities in compressing and indexing data, with many applications to information retrieval, genome analysis, data mining, and web search. In this paper, we survey the fascinating history and impact of Wavelet Trees; no doubt many more developments are yet to come. Our survey borrows some content from the authors' earlier works. This paper is divided into two parts: one (this one) giving a brief history of Wavelet Trees, including its varieties and practical implementations, dedicated to this Festschrift’s honoree Roberto Grossi; the second part deals with Wavelet Tree-based text indexing and is included in the Festschrift dedicated to Giovanni Manzini [Ferragina et al., 2025].
Cite as

Paolo Ferragina, Raffaele Giancarlo, Giovanni Manzini, Giovanna Rosone, Rossano Venturini, and Jeffrey Scott Vitter. Wavelet Tree, Part I: A Brief History. In From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 132, pp. 15:1-15:11, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ferragina_et_al:OASIcs.Grossi.15,
  author =	{Ferragina, Paolo and Giancarlo, Raffaele and Manzini, Giovanni and Rosone, Giovanna and Venturini, Rossano and Vitter, Jeffrey Scott},
  title =	{{Wavelet Tree, Part I: A Brief History}},
  booktitle =	{From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday},
  pages =	{15:1--15:11},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-391-1},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{132},
  editor =	{Conte, Alessio and Marino, Andrea and Rosone, Giovanna and Vitter, Jeffrey Scott},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Grossi.15},
  URN =		{urn:nbn:de:0030-drops-238143},
  doi =		{10.4230/OASIcs.Grossi.15},
  annote =	{Keywords: Wavelet tree, data compression, text indexing, compressed suffix array, Burrows-Wheeler transform, rank and select}
}
Document
DOI: 10.4230/OASIcs.Manzini.7
Algorithms for Computing Very Large BWTs: a Short Survey

Authors: Diego Díaz-Domínguez, Lavinia Egidi, Veronica Guerrini, Felipe A. Louza, and Giovanna Rosone

Published in: OASIcs, Volume 131, The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday (2025)

Abstract
The Burrows-Wheeler Transform (BWT) is a fundamental string transformation that, although initially introduced for data compression, has been extensively utilized across various domains, including text indexing and pattern matching within large datasets. Although the BWT construction is linear, the constants make the task impractical for large datasets, and as highlighted by Ferragina et al. [Paolo Ferragina et al., 2012], "to use it, one must first build it!". Thus, the construction of the BWT remains a significant challenge. For these reasons, during the past three decades there has been a succession of new algorithms for its construction using techniques that work in external memory or that use text compression. In this survey, we revise some of the most important advancements and tools presented in the past years for computing large BWTs exploiting external memory or text compression approaches without using additional information about the data.
Cite as

Diego Díaz-Domínguez, Lavinia Egidi, Veronica Guerrini, Felipe A. Louza, and Giovanna Rosone. Algorithms for Computing Very Large BWTs: a Short Survey. In The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 131, pp. 7:1-7:28, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{diazdominguez_et_al:OASIcs.Manzini.7,
  author =	{D{\'\i}az-Dom{\'\i}nguez, Diego and Egidi, Lavinia and Guerrini, Veronica and Louza, Felipe A. and Rosone, Giovanna},
  title =	{{Algorithms for Computing Very Large BWTs: a Short Survey}},
  booktitle =	{The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday},
  pages =	{7:1--7:28},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-390-4},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{131},
  editor =	{Ferragina, Paolo and Gagie, Travis and Navarro, Gonzalo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Manzini.7},
  URN =		{urn:nbn:de:0030-drops-239151},
  doi =		{10.4230/OASIcs.Manzini.7},
  annote =	{Keywords: Burrows-Wheeler transform, Extended Burrows-Wheeler transform, external memory, text compression, longest common prefix}
}
Document
DOI: 10.4230/OASIcs.Manzini.8
A Taxonomy of LCP-Array Construction Algorithms

Authors: Johannes Fischer and Enno Ohlebusch

Published in: OASIcs, Volume 131, The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday (2025)

Abstract
The combination of the suffix array and the LCP-array can be used to solve many string processing problems efficiently. We review some of the most important sequential LCP-array construction algorithms in random access memory.
Cite as

Johannes Fischer and Enno Ohlebusch. A Taxonomy of LCP-Array Construction Algorithms. In The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 131, pp. 8:1-8:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{fischer_et_al:OASIcs.Manzini.8,
  author =	{Fischer, Johannes and Ohlebusch, Enno},
  title =	{{A Taxonomy of LCP-Array Construction Algorithms}},
  booktitle =	{The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday},
  pages =	{8:1--8:17},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-390-4},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{131},
  editor =	{Ferragina, Paolo and Gagie, Travis and Navarro, Gonzalo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Manzini.8},
  URN =		{urn:nbn:de:0030-drops-239166},
  doi =		{10.4230/OASIcs.Manzini.8},
  annote =	{Keywords: longest common prefix array, suffix array, Burrows-Wheeler transform}
}
Document
DOI: 10.4230/OASIcs.Manzini.14
BWT Indexes for Optimal Joins in Graph Databases

Authors: Diego Arroyuelo and Gonzalo Navarro

Published in: OASIcs, Volume 131, The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday (2025)

Abstract
Graph databases represent data as a labeled directed graph, where the labels refer to properties that connect the entities represented by their source and target vertices. Queries feature, most prominently, sets of edges where source, target, and/or label can be variables; each instantiation of the variables where all the edges occur in the graph is a solution to the query. Worst-case-optimal algorithms to solve those queries have been devised, but they pose significant space requirements. This overhead has hindered the adoption of worst-case-optimal algorithms in real systems. We show that a representation of the graph based on the extended BWT (eBWT), where each edge is seen as an independent string of length 3 (source, label, target) supports worst-case-optimal algorithms while using almost no extra space on top of the raw data. We then show how the idea is generalized to the relational model, where the strings can be longer than 3 and several eBWTs are needed to obtain worst-case optimality. The aim to minimize the amount of space in that case leads to consider novel eBWT variants, where columns other than the last can be chosen. Finally, we show how the same graph representation can be used to solve other typical queries, like finding graph paths that match regular expressions.
Cite as

Diego Arroyuelo and Gonzalo Navarro. BWT Indexes for Optimal Joins in Graph Databases. In The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 131, pp. 14:1-14:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{arroyuelo_et_al:OASIcs.Manzini.14,
  author =	{Arroyuelo, Diego and Navarro, Gonzalo},
  title =	{{BWT Indexes for Optimal Joins in Graph Databases}},
  booktitle =	{The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday},
  pages =	{14:1--14:19},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-390-4},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{131},
  editor =	{Ferragina, Paolo and Gagie, Travis and Navarro, Gonzalo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Manzini.14},
  URN =		{urn:nbn:de:0030-drops-239222},
  doi =		{10.4230/OASIcs.Manzini.14},
  annote =	{Keywords: Graph databases, Ring index, extended BWT, compact data structures}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.23
On the Instance Optimality of Detecting Collisions and Subgraphs

Authors: Omri Ben-Eliezer, Tomer Grossman, and Moni Naor

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
Suppose you are given a function f: [n] → [n] via (black-box) query access to the function. You are looking to find something local, like a collision (a pair x ≠ y s.t. f(x) = f(y)). The question is whether knowing the "shape" of the function helps you or not (by shape we mean that some permutation of the function is known). Formally, we investigate the unlabeled instance optimality of substructure detection problems in graphs and functions. A problem is g(n)-instance optimal if it admits an algorithm A satisfying that for any possible input, the (randomized) query complexity of A is at most g(n) times larger than the query complexity of any algorithm A' which solves the same problem while holding an unlabeled copy of the input (i.e., any A' that "knows the structure of the input"). Our results point to a trichotomy of unlabeled instance optimality among substructure detection problems in graphs and functions: - A few very simple properties have an O(1)-instance optimal algorithm. - Most properties of graphs and functions, with examples such as containing a fixed point or a 3-collision in functions, or a triangle in graphs, are n^{c}-far from instance optimal for some constant c > 0. - The problems of collision detection in functions and finding a claw in a graph serve as a middle ground between the two regimes. We show that these two properties are not Ω(log n)-instance optimal, and conjecture that this bound is tight. We provide evidence towards this conjecture, by proving that finding a claw in a graph is O(log(n))-instance optimal among all input graphs for which the query complexity of an algorithm holding an unlabeled certificate is O(√{n/(log n)}).
Cite as

Omri Ben-Eliezer, Tomer Grossman, and Moni Naor. On the Instance Optimality of Detecting Collisions and Subgraphs. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 23:1-23:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{beneliezer_et_al:LIPIcs.ICALP.2025.23,
  author =	{Ben-Eliezer, Omri and Grossman, Tomer and Naor, Moni},
  title =	{{On the Instance Optimality of Detecting Collisions and Subgraphs}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{23:1--23:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.23},
  URN =		{urn:nbn:de:0030-drops-234002},
  doi =		{10.4230/LIPIcs.ICALP.2025.23},
  annote =	{Keywords: instance optimality, instance complexity, unlabeled certificate, subgraph detection, collision detection}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.114
Optimal Static Fully Indexable Dictionaries

Authors: Jingxun Liang and Renfei Zhou

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
Fully indexable dictionaries (FID) store sets of integer keys while supporting rank/select queries. They serve as basic building blocks in many succinct data structures. Despite the great importance of FIDs, no known FID is succinct with efficient query time when the universe size U is a large polynomial in the number of keys n, which is the conventional parameter regime for dictionary problems. In this paper, we design an FID that uses log binom(U,n) + n/((log U/t)^{Ω(t)}) bits of space, and answers rank/select queries in O(t + log log n) time in the worst case, for any parameter 1 ≤ t ≤ log n / log log n, provided U = n^{1 + Θ(1)}. This time-space trade-off matches known lower bounds for FIDs [Pǎtraşcu and Thorup, 2006; Pǎtraşcu and Viola, 2010; Viola, 2023] when t ≤ log^{0.99} n. Our techniques also lead to efficient succinct data structures for the fundamental problem of maintaining n integers each of 𝓁 = Θ(log n) bits and supporting partial-sum queries, with a trade-off between O(t) query time and n𝓁 + n / (log n / t)^{Ω(t)} bits of space. Prior to this work, no known data structure for the partial-sum problem achieves constant query time with n 𝓁 + o(n) bits of space usage.
Cite as

Jingxun Liang and Renfei Zhou. Optimal Static Fully Indexable Dictionaries. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 114:1-114:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{liang_et_al:LIPIcs.ICALP.2025.114,
  author =	{Liang, Jingxun and Zhou, Renfei},
  title =	{{Optimal Static Fully Indexable Dictionaries}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{114:1--114:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.114},
  URN =		{urn:nbn:de:0030-drops-234918},
  doi =		{10.4230/LIPIcs.ICALP.2025.114},
  annote =	{Keywords: data structures, dictionaries, space efficiency}
}
Document
DOI: 10.4230/LIPIcs.SoCG.2025.51
Quantum Combine and Conquer and Its Applications to Sublinear Quantum Convex Hull and Maxima Set Construction

Authors: Shion Fukuzawa, Michael T. Goodrich, and Sandy Irani

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract
We introduce a quantum algorithm design paradigm called combine and conquer, which is a quantum version of the "marriage-before-conquest" technique of Kirkpatrick and Seidel. In a quantum combine-and-conquer algorithm, one performs the essential computation of the combine step of a quantum divide-and-conquer algorithm prior to the conquer step while avoiding recursion. This model is better suited for the quantum setting, due to its non-recursive nature. We show the utility of this approach by providing quantum algorithms for 2D maxima set and convex hull problems for sorted point sets running in Õ(√{nh}) time, w.h.p., where h is the size of the output.
Cite as

Shion Fukuzawa, Michael T. Goodrich, and Sandy Irani. Quantum Combine and Conquer and Its Applications to Sublinear Quantum Convex Hull and Maxima Set Construction. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 51:1-51:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{fukuzawa_et_al:LIPIcs.SoCG.2025.51,
  author =	{Fukuzawa, Shion and Goodrich, Michael T. and Irani, Sandy},
  title =	{{Quantum Combine and Conquer and Its Applications to Sublinear Quantum Convex Hull and Maxima Set Construction}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{51:1--51:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.51},
  URN =		{urn:nbn:de:0030-drops-232035},
  doi =		{10.4230/LIPIcs.SoCG.2025.51},
  annote =	{Keywords: quantum computing, computational geometry, divide and conquer, convex hulls, maxima sets}
}
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