33 Search Results for "Neuen, Daniel"


Document
Symmetric Algebraic Circuits and Homomorphism Polynomials

Authors: Anuj Dawar, Benedikt Pago, and Tim Seppelt

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)


Abstract
The central open question of algebraic complexity is whether VP ≠ VNP, which is saying that the permanent cannot be represented by families of polynomial-size algebraic circuits. For symmetric algebraic circuits, this has been confirmed by Dawar and Wilsenach (2020), who showed exponential lower bounds on the size of symmetric circuits for the permanent. In this work, we set out to develop a more general symmetric algebraic complexity theory. Our main result is that a family of symmetric polynomials admits small symmetric circuits if and only if they can be written as a linear combination of homomorphism counting polynomials of graphs of bounded treewidth. We also establish a relationship between the symmetric complexity of subgraph counting polynomials and the vertex cover number of the pattern graph. As a concrete example, we examine the symmetric complexity of immanant families (a generalisation of the determinant and permanent) and show that a known conditional dichotomy due to Curticapean (2021) holds unconditionally in the symmetric setting.

Cite as

Anuj Dawar, Benedikt Pago, and Tim Seppelt. Symmetric Algebraic Circuits and Homomorphism Polynomials. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 46:1-46:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{dawar_et_al:LIPIcs.ITCS.2026.46,
  author =	{Dawar, Anuj and Pago, Benedikt and Seppelt, Tim},
  title =	{{Symmetric Algebraic Circuits and Homomorphism Polynomials}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{46:1--46:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.46},
  URN =		{urn:nbn:de:0030-drops-253330},
  doi =		{10.4230/LIPIcs.ITCS.2026.46},
  annote =	{Keywords: algebraic complexity, finite model theory, symmetric circuits, homomorphism counting, graph homomorphism, treewidth, counting width, first-order logic with counting quantifiers}
}
Document
Treedepth Inapproximability and Exponential ETH Lower Bound

Authors: Édouard Bonnet, Daniel Neuen, and Marek Sokołowski

Published in: LIPIcs, Volume 358, 20th International Symposium on Parameterized and Exact Computation (IPEC 2025)


Abstract
Treedepth is a central parameter to algorithmic graph theory. The current state-of-the-art in computing and approximating treedepth consists of a 2^{O(k²)} n-time exact algorithm and a polynomial-time O(OPT log^{3/2} OPT)-approximation algorithm, where the former algorithm returns an elimination forest of height k (witnessing that treedepth is at most k) for the n-vertex input graph G, or correctly reports that G has treedepth larger than k, and OPT is the actual value of the treedepth. On the complexity side, exactly computing treedepth is NP-complete, but the known reductions do not rule out a polynomial-time approximation scheme (PTAS), and under the Exponential Time Hypothesis (ETH) only exclude a running time of 2^o(√n) for exact algorithms. We show that 1.0003-approximating Treedepth is NP-hard, and that exactly computing the treedepth of an n-vertex graph requires time 2^Ω(n), unless the ETH fails. We further derive that there exist absolute constants δ, c > 0 such that any (1+δ)-approximation algorithm requires time 2^Ω(n/log^c n). We do so via a simple direct reduction from Satisfiability to Treedepth, inspired by a reduction recently designed for Treewidth [STOC '25].

Cite as

Édouard Bonnet, Daniel Neuen, and Marek Sokołowski. Treedepth Inapproximability and Exponential ETH Lower Bound. In 20th International Symposium on Parameterized and Exact Computation (IPEC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 358, pp. 17:1-17:10, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{bonnet_et_al:LIPIcs.IPEC.2025.17,
  author =	{Bonnet, \'{E}douard and Neuen, Daniel and Soko{\l}owski, Marek},
  title =	{{Treedepth Inapproximability and Exponential ETH Lower Bound}},
  booktitle =	{20th International Symposium on Parameterized and Exact Computation (IPEC 2025)},
  pages =	{17:1--17:10},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-407-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{358},
  editor =	{Agrawal, Akanksha and van Leeuwen, Erik Jan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2025.17},
  URN =		{urn:nbn:de:0030-drops-251494},
  doi =		{10.4230/LIPIcs.IPEC.2025.17},
  annote =	{Keywords: treedepth, lower bounds, approximation}
}
Document
Generalized Graph Packing Problems Parameterized by Treewidth

Authors: Barış Can Esmer and Dániel Marx

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)


Abstract
H-Packing is the problem of finding a maximum number of vertex-disjoint copies of H in a given graph G. H-Partition is the special case of finding a set of vertex-disjoint copies that cover each vertex of G exactly once. Our goal is to study these problems and some generalizations on bounded-treewidth graphs. The case of H being a triangle is well understood: given a tree decomposition of G having treewidth tw, the K₃-Packing problem can be solved in time 2^tw⋅ n^O(1), while Lokshtanov et al. [ACM Transactions on Algorithms 2018] showed, under the Strong Exponential-Time Hypothesis (SETH), that there is no (2-ε)^tw⋅ n^O(1) algorithm for any ε > 0 even for K₃-Partition. Similar results can be obtained for any other clique K_d for d ≥ 3. We provide generalizations in two directions: - We consider a generalization of the problem where every vertex can be used at most c times for some c ≥ 1. When H is any clique K_d with d ≥ 3, then we give upper and lower bounds showing that the optimal running time increases to (c+1)^tw⋅ n^O(1). We consider two variants depending on whether a copy of H can be used multiple times in the packing. - If H is not a clique, then the dependence of the running time on treewidth may not be even single exponential. Specifically, we show that if H is any fixed graph where not every 2-connected component is a clique, then there is no 2^o(tw log tw)⋅ n^O(1) algorithm for H-Partition, assuming the Exponential-Time Hypothesis (ETH).

Cite as

Barış Can Esmer and Dániel Marx. Generalized Graph Packing Problems Parameterized by Treewidth. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 3:1-3:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{canesmer_et_al:LIPIcs.ESA.2025.3,
  author =	{Can Esmer, Bar{\i}\c{s} and Marx, D\'{a}niel},
  title =	{{Generalized Graph Packing Problems Parameterized by Treewidth}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{3:1--3:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.3},
  URN =		{urn:nbn:de:0030-drops-244713},
  doi =		{10.4230/LIPIcs.ESA.2025.3},
  annote =	{Keywords: Graph Packing, Graph Partitioning, Parameterized Complexity, Treewidth, Pathwidth, pw-SETH, Single-Exponential Lower Bound, Slightly Superexponential Lower Bound}
}
Document
Counting Small Induced Subgraphs: Scorpions Are Easy but Not Trivial

Authors: Radu Curticapean, Simon Döring, and Daniel Neuen

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)


Abstract
In the parameterized problem #IndSub(Φ) for fixed graph properties Φ, given as input a graph G and an integer k, the task is to compute the number of induced k-vertex subgraphs satisfying Φ. Dörfler et al. [Algorithmica 2022] and Roth et al. [SICOMP 2024] conjectured that #IndSub(Φ) is #W[1]-hard for all non-meager properties Φ, i.e., properties that are nontrivial for infinitely many k. This conjecture has been confirmed for several restricted types of properties, including all hereditary properties [STOC 2022] and all edge-monotone properties [STOC 2024]. We refute this conjecture by showing that induced k-vertex graphs that are scorpions can be counted in time O(n⁴) for all k. Scorpions were introduced more than 50 years ago in the context of the evasiveness conjecture. A simple variant of this construction results in graph properties that achieve arbitrary intermediate complexity assuming ETH. Moreover, we formulate an updated conjecture on the complexity of #IndSub(Φ) that correctly captures the complexity status of scorpions and related constructions.

Cite as

Radu Curticapean, Simon Döring, and Daniel Neuen. Counting Small Induced Subgraphs: Scorpions Are Easy but Not Trivial. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 96:1-96:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{curticapean_et_al:LIPIcs.ESA.2025.96,
  author =	{Curticapean, Radu and D\"{o}ring, Simon and Neuen, Daniel},
  title =	{{Counting Small Induced Subgraphs: Scorpions Are Easy but Not Trivial}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{96:1--96:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.96},
  URN =		{urn:nbn:de:0030-drops-245651},
  doi =		{10.4230/LIPIcs.ESA.2025.96},
  annote =	{Keywords: induced subgraphs, counting complexity, parameterized complexity, scorpions}
}
Document
Tight Bounds for Some Classical Problems Parameterized by Cutwidth

Authors: Narek Bojikian, Vera Chekan, and Stefan Kratsch

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)


Abstract
Cutwidth is a widely studied parameter and it quantifies how well a graph can be decomposed along small edge-cuts. It complements pathwidth, which captures decomposition by small vertex separators, and it is well-known that cutwidth upper-bounds pathwidth. The SETH-tight parameterized complexity of problems on graphs of bounded pathwidth (and treewidth) has been actively studied over the past decade while for cutwidth the complexity of many classical problems remained open. For Hamiltonian Cycle, it is known that a (2+√2)^{pw} n^𝒪(1) algorithm is optimal for pathwidth under SETH [Cygan et al. JACM 2018]. Van Geffen et al. [J. Graph Algorithms Appl. 2020] and Bojikian et al. [STACS 2023] asked which running time is optimal for this problem parameterized by cutwidth. We answer this question with (1+√2)^{ctw} n^𝒪(1) by providing matching upper and lower bounds. Second, as our main technical contribution, we close the gap left by van Heck [2018] for Partition Into Triangles (and Triangle Packing) by improving both upper and lower bound and getting a tight bound of ∛{3}^{ctw} n^𝒪(1), which to our knowledge exhibits the only known tight non-integral basis apart from Hamiltonian Cycle [Cygan et al. JACM 2018] and C₄-Hitting Set [SODA 2025]. We show that the cuts inducing a disjoint union of paths of length three (unions of so-called Z-cuts) lie at the core of the complexity of the problem - usually lower-bound constructions use simpler cuts inducing either a matching or a disjoint union of bicliques. Finally, we determine the optimal running times for Max Cut (2^{ctw} n^𝒪(1)) and Induced Matching (3^{ctw} n^𝒪(1)) by providing matching lower bounds for the existing algorithms - the latter result also answers an open question for treewidth by Chaudhary and Zehavi [WG 2023].

Cite as

Narek Bojikian, Vera Chekan, and Stefan Kratsch. Tight Bounds for Some Classical Problems Parameterized by Cutwidth. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 13:1-13:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{bojikian_et_al:LIPIcs.ESA.2025.13,
  author =	{Bojikian, Narek and Chekan, Vera and Kratsch, Stefan},
  title =	{{Tight Bounds for Some Classical Problems Parameterized by Cutwidth}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{13:1--13:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.13},
  URN =		{urn:nbn:de:0030-drops-244815},
  doi =		{10.4230/LIPIcs.ESA.2025.13},
  annote =	{Keywords: Parameterized complexity, cutwidth, Hamiltonian cycle, triangle packing, max cut, induced matching}
}
Document
Homomorphism Indistinguishability and Game Comonads for Restricted Conjunction and Requantification

Authors: Georg Schindling

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)


Abstract
The notion of homomorphism indistinguishability offers a combinatorial framework for characterizing equivalence relations of graphs, in particular equivalences in counting logics within finite model theory. That is, for certain graph classes, two structures agree on all homomorphism counts from the class if and only if they satisfy the same sentences in a corresponding logic. This perspective often reveals connections between the combinatorial properties of graph classes and the syntactic structure of logical fragments. In this work, we extend this perspective to logics with restricted requantification, refining the stratification of logical resources in finite-variable counting logics. Specifically, we generalize Lovász-type theorems for these logics with either restricted conjunction or bounded quantifier-rank and present new combinatorial proofs of existing results. To this end, we introduce novel path and tree decompositions that incorporate the concept of reusability and develop characterizations based on pursuit-evasion games. Leveraging this framework, we establish that classes of bounded pathwidth and treewidth with reusability constraints are homomorphism distinguishing closed. Finally, we develop a comonadic perspective on requantification by constructing new comonads that encapsulate restricted-reusability pebble games. We show a tight correspondence between their coalgebras and path/tree decompositions, yielding categorical characterizations of reusability in graph decompositions. This unifies logical, combinatorial, and categorical perspectives on the notion of reusability.

Cite as

Georg Schindling. Homomorphism Indistinguishability and Game Comonads for Restricted Conjunction and Requantification. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 89:1-89:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{schindling:LIPIcs.MFCS.2025.89,
  author =	{Schindling, Georg},
  title =	{{Homomorphism Indistinguishability and Game Comonads for Restricted Conjunction and Requantification}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{89:1--89:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.89},
  URN =		{urn:nbn:de:0030-drops-241962},
  doi =		{10.4230/LIPIcs.MFCS.2025.89},
  annote =	{Keywords: homomorphism indistinguishability, game comonads, finite variable counting logic, restricted conjunction, restricted requantification, tree decomposition, path decomposition}
}
Document
Monotone Bounded-Depth Complexity of Homomorphism Polynomials

Authors: C.S. Bhargav, Shiteng Chen, Radu Curticapean, and Prateek Dwivedi

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)


Abstract
For every fixed graph H, it is known that homomorphism counts from H and colorful H-subgraph counts can be determined in O(n^{t+1}) time on n-vertex input graphs G, where t is the treewidth of H. On the other hand, a running time of n^{o(t / log t)} would refute the exponential-time hypothesis. Komarath, Pandey, and Rahul (Algorithmica, 2023) studied algebraic variants of these counting problems, i.e., homomorphism and subgraph polynomials for fixed graphs H. These polynomials are weighted sums over the objects counted above, where each object is weighted by the product of variables corresponding to edges contained in the object. As shown by Komarath et al., the monotone circuit complexity of the homomorphism polynomial for H is Θ(n^{tw(H)+1}). In this paper, we characterize the power of monotone bounded-depth circuits for homomorphism and colorful subgraph polynomials. This leads us to discover a natural hierarchy of graph parameters tw_Δ(H), for fixed Δ ∈ ℕ, which capture the width of tree-decompositions for H when the underlying tree is required to have depth at most Δ. We prove that monotone circuits of product-depth Δ computing the homomorphism polynomial for H require size Θ(n^{tw_Δ(H^{†})+1}), where H^{†} is the graph obtained from H by removing all degree-1 vertices. This allows us to derive an optimal depth hierarchy theorem for monotone bounded-depth circuits through graph-theoretic arguments.

Cite as

C.S. Bhargav, Shiteng Chen, Radu Curticapean, and Prateek Dwivedi. Monotone Bounded-Depth Complexity of Homomorphism Polynomials. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 19:1-19:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{bhargav_et_al:LIPIcs.MFCS.2025.19,
  author =	{Bhargav, C.S. and Chen, Shiteng and Curticapean, Radu and Dwivedi, Prateek},
  title =	{{Monotone Bounded-Depth Complexity of Homomorphism Polynomials}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{19:1--19:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.19},
  URN =		{urn:nbn:de:0030-drops-241269},
  doi =		{10.4230/LIPIcs.MFCS.2025.19},
  annote =	{Keywords: algebraic complexity, homomorphisms, monotone circuit complexity, bounded-depth circuits, treewidth, pathwidth}
}
Document
Supercritical Size-Width Tree-Like Resolution Trade-Offs for Graph Isomorphism

Authors: Christoph Berkholz, Moritz Lichter, and Harry Vinall-Smeeth

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)


Abstract
We study the refutation complexity of graph isomorphism in the tree-like resolution calculus. Torán and Wörz [Jacobo Torán and Florian Wörz, 2023] showed that there is a resolution refutation of narrow width k for two graphs if and only if they can be distinguished in (k+1)-variable first-order logic (FO^{k+1}). While DAG-like narrow width k resolution refutations have size at most n^k, tree-like refutations may be much larger. We show that there are graphs of order n, whose isomorphism can be refuted in narrow width k but only in tree-like size 2^{Ω(n^{k/2})}. This is a supercritical trade-off where bounding one parameter (the narrow width) causes the other parameter (the size) to grow above its worst case. The size lower bound is super-exponential in the formula size and improves a related supercritical trade-off by Razborov [Alexander A. Razborov, 2016]. To prove our result, we develop a new variant of the k-pebble EF-game for FO^k to reason about tree-like refutation size in a similar way as the Prover-Delayer games in proof complexity. We analyze this game on the compressed CFI graphs introduced by Grohe, Lichter, Neuen, and Schweitzer [Martin Grohe et al., 2023]. Using a recent improved robust compressed CFI construction of de Rezende, Fleming, Janett, Nordström, and Pang [Susanna F. de Rezende et al., 2024], we obtain a similar bound for width k (instead of the stronger but less common narrow width) and make the result more robust.

Cite as

Christoph Berkholz, Moritz Lichter, and Harry Vinall-Smeeth. Supercritical Size-Width Tree-Like Resolution Trade-Offs for Graph Isomorphism. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 18:1-18:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{berkholz_et_al:LIPIcs.MFCS.2025.18,
  author =	{Berkholz, Christoph and Lichter, Moritz and Vinall-Smeeth, Harry},
  title =	{{Supercritical Size-Width Tree-Like Resolution Trade-Offs for Graph Isomorphism}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{18:1--18:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.18},
  URN =		{urn:nbn:de:0030-drops-241253},
  doi =		{10.4230/LIPIcs.MFCS.2025.18},
  annote =	{Keywords: Proof complexity, Resolution, Width, Tree-like size, Supercritical trade-off, Lower bound, Finite model theory, CFI graphs}
}
Document
Extension of Partial Atom-To-Atom Maps: Uniqueness and Algorithms

Authors: Marcos E. González Laffitte, Tieu-Long Phan, and Peter F. Stadler

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)


Abstract
Chemical reaction databases typically report the molecular structures of reactant and product compounds, as well as their stoichiometry, but lack information, in particular, on the correspondence of reactant and product atoms. These atom-to-atom maps (AAM), however, are crucial for applications including chemical synthesis planning in organic chemistry and the analysis of isotope labeling experiments in modern metabolomics. AAMs therefore need to be reconstructed computationally. This situation is aggravated, furthermore, by the fact that chemically correct AAMs are, fundamentally, determined by quantum-mechanical phenomena and thus cannot be reliably computed by solving graph-theoretical optimization problems defined by the reactant and product structures. A viable solution for this problem is to shift the focus into first identifying a partial AAM containing the reaction center, i.e., covering the atoms incident with all bonds that change during a reaction. This then leads to the problem of extending the partial map to the full reaction. The AAM of a reaction is faithfully represented by the Imaginary Transition State (ITS) graph, providing a convenient graph-theoretic framework to address the questions of when and how a partial AAM can be extended. We show that an unique extension exists whenever, and only if, these partial AAMs cover the reaction center. In this case their extension can be computed by solving a constrained graph-isomorphism search between specific subgraphs of ITS graphs. We close by benchmarking different tools for this task.

Cite as

Marcos E. González Laffitte, Tieu-Long Phan, and Peter F. Stadler. Extension of Partial Atom-To-Atom Maps: Uniqueness and Algorithms. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 12:1-12:26, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{gonzalezlaffitte_et_al:LIPIcs.WABI.2025.12,
  author =	{Gonz\'{a}lez Laffitte, Marcos E. and Phan, Tieu-Long and Stadler, Peter F.},
  title =	{{Extension of Partial Atom-To-Atom Maps: Uniqueness and Algorithms}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{12:1--12:26},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.12},
  URN =		{urn:nbn:de:0030-drops-239410},
  doi =		{10.4230/LIPIcs.WABI.2025.12},
  annote =	{Keywords: atom-to-atom maps, imaginary transition state (ITS) graphs, condensed graph of the reaction (CGR), chemical reaction mechanisms, molecular graphs, metabolic networks, chemical synthesis planning, constrained graph isomorphism}
}
Document
Track A: Algorithms, Complexity and Games
Robust Contraction Decomposition for Minor-Free Graphs and Its Applications

Authors: Sayan Bandyapadhyay, William Lochet, Daniel Lokshtanov, Dániel Marx, Pranabendu Misra, Daniel Neuen, Saket Saurabh, Prafullkumar Tale, and Jie Xue

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)


Abstract
We prove a robust contraction decomposition theorem for H-minor-free graphs, which states that given an H-minor-free graph G and an integer p, one can partition in polynomial time the vertices of G into p sets Z₁,… ,Z_p such that tw(G/(Z_i ⧵ Z')) = O(p + |Z'|) for all i ∈ [p] and Z' ⊆ Z_i. Here, tw(⋅) denotes the treewidth of a graph and G/(Z_i ⧵ Z') denotes the graph obtained from G by contracting all edges with both endpoints in Z_i ⧵ Z'. Our result generalizes earlier results by Klein [SICOMP 2008] and Demaine et al. [STOC 2011] based on partitioning E(G), and some recent theorems for planar graphs by Marx et al. [SODA 2022], for bounded-genus graphs (more generally, almost-embeddable graphs) by Bandyapadhyay et al. [SODA 2022], and for unit-disk graphs by Bandyapadhyay et al. [SoCG 2022]. The robust contraction decomposition theorem directly results in parameterized algorithms with running time 2^{Õ(√k)} ⋅ n^{O(1)} or n^{O(√k)} for every vertex/edge deletion problems on H-minor-free graphs that can be formulated as Permutation CSP Deletion or 2-Conn Permutation CSP Deletion. Consequently, we obtain the first subexponential-time parameterized algorithms for Subset Feedback Vertex Set, Subset Odd Cycle Transversal, Subset Group Feedback Vertex Set, 2-Conn Component Order Connectivity on H-minor-free graphs. For other problems which already have subexponential-time parameterized algorithms on H-minor-free graphs (e.g., Odd Cycle Transversal, Vertex Multiway Cut, Vertex Multicut, etc.), our theorem gives much simpler algorithms of the same running time.

Cite as

Sayan Bandyapadhyay, William Lochet, Daniel Lokshtanov, Dániel Marx, Pranabendu Misra, Daniel Neuen, Saket Saurabh, Prafullkumar Tale, and Jie Xue. Robust Contraction Decomposition for Minor-Free Graphs and Its Applications. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 17:1-17:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{bandyapadhyay_et_al:LIPIcs.ICALP.2025.17,
  author =	{Bandyapadhyay, Sayan and Lochet, William and Lokshtanov, Daniel and Marx, D\'{a}niel and Misra, Pranabendu and Neuen, Daniel and Saurabh, Saket and Tale, Prafullkumar and Xue, Jie},
  title =	{{Robust Contraction Decomposition for Minor-Free Graphs and Its Applications}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{17:1--17:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.17},
  URN =		{urn:nbn:de:0030-drops-233948},
  doi =		{10.4230/LIPIcs.ICALP.2025.17},
  annote =	{Keywords: subexponential time algorithms, graph decomposition, planar graphs, minor-free graphs, graph contraction}
}
Document
Track A: Algorithms, Complexity and Games
NPA Hierarchy for Quantum Isomorphism and Homomorphism Indistinguishability

Authors: Prem Nigam Kar, David E. Roberson, Tim Seppelt, and Peter Zeman

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)


Abstract
Mančinska and Roberson [FOCS'20] showed that two graphs are quantum isomorphic if and only if they are homomorphism indistinguishable over the class of planar graphs. Atserias et al. [JCTB'19] proved that quantum isomorphism is undecidable in general. The NPA hierarchy gives a sequence of semidefinite programming relaxations of quantum isomorphism. Recently, Roberson and Seppelt [ICALP'23] obtained a homomorphism indistinguishability characterization of the feasibility of each level of the Lasserre hierarchy of semidefinite programming relaxations of graph isomorphism. We prove a quantum analogue of this result by showing that each level of the NPA hierarchy of SDP relaxations for quantum isomorphism of graphs is equivalent to homomorphism indistinguishability over an appropriate class of planar graphs. By combining the convergence of the NPA hierarchy with the fact that the union of these graph classes is the set of all planar graphs, we are able to give a new proof of the result of Mančinska and Roberson [FOCS'20] that avoids the use of the theory of quantum groups. This homomorphism indistinguishability characterization also allows us to give a randomized polynomial-time algorithm deciding exact feasibility of each fixed level of the NPA hierarchy of SDP relaxations for quantum isomorphism.

Cite as

Prem Nigam Kar, David E. Roberson, Tim Seppelt, and Peter Zeman. NPA Hierarchy for Quantum Isomorphism and Homomorphism Indistinguishability. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 105:1-105:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{kar_et_al:LIPIcs.ICALP.2025.105,
  author =	{Kar, Prem Nigam and Roberson, David E. and Seppelt, Tim and Zeman, Peter},
  title =	{{NPA Hierarchy for Quantum Isomorphism and Homomorphism Indistinguishability}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{105:1--105:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.105},
  URN =		{urn:nbn:de:0030-drops-234828},
  doi =		{10.4230/LIPIcs.ICALP.2025.105},
  annote =	{Keywords: Quantum isomorphism, NPA hierarchy, homomorphism indistinguishability}
}
Document
Track A: Algorithms, Complexity and Games
Parameterised Holant Problems

Authors: Panagiotis Aivasiliotis, Andreas Göbel, Marc Roth, and Johannes Schmitt

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)


Abstract
We investigate the complexity of parameterised holant problems p-Holant(𝒮) for families of symmetric signatures 𝒮. The parameterised holant framework has been introduced by Curticapean in 2015 as a counter-part to the classical and well-established theory of holographic reductions and algorithms, and it constitutes an extensive family of coloured and weighted counting constraint satisfaction problems on graph-like structures, encoding as special cases various well-studied counting problems in parameterised and fine-grained complexity theory such as counting edge-colourful k-matchings, graph-factors, Eulerian orientations or, more generally, subgraphs with weighted degree constraints. We establish an exhaustive complexity trichotomy along the set of signatures 𝒮: Depending on the signatures, p-Holant(𝒮) is either 1) solvable in "FPT-near-linear time", i.e., in time f(k)⋅ 𝒪̃(|x|), or 2) solvable in "FPT-matrix-multiplication time", i.e., in time f(k)⋅ {𝒪}(n^{ω}), where n is the number of vertices of the underlying graph, but not solvable in FPT-near-linear time, unless the Triangle Conjecture fails, or 3) #W[1]-complete and no significant improvement over the naive brute force algorithm is possible unless the Exponential Time Hypothesis fails. This classification reveals a significant and surprising gap in the complexity landscape of parameterised Holants: Not only is every instance either fixed-parameter tractable or #W[1]-complete, but additionally, every FPT instance is solvable in time (at most) f(k)⋅ {𝒪}(n^{ω}). We show that there are infinitely many instances of each of the types; for example, all constant signatures yield holant problems of type (1), and the problem of counting edge-colourful k-matchings modulo p is of type (p) for p ∈ {2,3}. Finally, we also establish a complete classification for a natural uncoloured version of parameterised holant problem p-UnColHolant(𝒮), which encodes as special cases the non-coloured analogues of the aforementioned examples. We show that the complexity of p-UnColHolant(𝒮) is different: Depending on 𝒮 all instances are either solvable in FPT-near-linear time, or #W[1]-complete, that is, there are no instances of type (2).

Cite as

Panagiotis Aivasiliotis, Andreas Göbel, Marc Roth, and Johannes Schmitt. Parameterised Holant Problems. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 7:1-7:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{aivasiliotis_et_al:LIPIcs.ICALP.2025.7,
  author =	{Aivasiliotis, Panagiotis and G\"{o}bel, Andreas and Roth, Marc and Schmitt, Johannes},
  title =	{{Parameterised Holant Problems}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{7:1--7:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.7},
  URN =		{urn:nbn:de:0030-drops-233842},
  doi =		{10.4230/LIPIcs.ICALP.2025.7},
  annote =	{Keywords: holant problems, counting problems, parameterised algorithms, fine-grained complexity theory, homomorphisms}
}
Document
Track A: Algorithms, Complexity and Games
Sampling with a Black Box: Faster Parameterized Approximation Algorithms for Vertex Deletion Problems

Authors: Barış Can Esmer and Ariel Kulik

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)


Abstract
In this paper, we present Sampling with a Black Box, a unified framework for the design of parameterized approximation algorithms for vertex deletion problems (e.g., Vertex Cover, Feedback Vertex Set, etc.). The framework relies on two components: - A Sampling Step. A polynomial-time randomized algorithm that, given a graph G, returns a random vertex v such that the optimum of G⧵ {v} is smaller by 1 than the optimum of G, with some prescribed probability q. We show that such algorithms exist for multiple vertex deletion problems. - A Black Box algorithm which is either an exact parameterized algorithm, a polynomial-time approximation algorithm, or a parameterized-approximation algorithm. The framework combines these two components together. The sampling step is applied iteratively to remove vertices from the input graph, and then the solution is extended using the black box algorithm. The process is repeated sufficiently many times so that the target approximation ratio is attained with a constant probability. We use the technique to derive parameterized approximation algorithms for several vertex deletion problems, including Feedback Vertex Set, d-Hitting Set and 𝓁-Path Vertex Cover. In particular, for every approximation ratio 1 < β < 2, we attain a parameterized β-approximation for Feedback Vertex Set, which is faster than the parameterized β-approximation of [Jana, Lokshtanov, Mandal, Rai and Saurabh, MFCS 23']. Furthermore, our algorithms are always faster than the algorithms attained using Fidelity Preserving Transformations [Fellows, Kulik, Rosamond, and Shachnai, JCSS 18'].

Cite as

Barış Can Esmer and Ariel Kulik. Sampling with a Black Box: Faster Parameterized Approximation Algorithms for Vertex Deletion Problems. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 39:1-39:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{canesmer_et_al:LIPIcs.ICALP.2025.39,
  author =	{Can Esmer, Bar{\i}\c{s} and Kulik, Ariel},
  title =	{{Sampling with a Black Box: Faster Parameterized Approximation Algorithms for Vertex Deletion Problems}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{39:1--39:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.39},
  URN =		{urn:nbn:de:0030-drops-234165},
  doi =		{10.4230/LIPIcs.ICALP.2025.39},
  annote =	{Keywords: Parameterized Approximation Algorithms, Random Sampling}
}
Document
Track A: Algorithms, Complexity and Games
An Upper Bound on the Weisfeiler-Leman Dimension

Authors: Thomas Schneider and Pascal Schweitzer

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)


Abstract
The Weisfeiler-Leman (WL) algorithms form a family of incomplete approaches to the graph isomorphism problem. They recently found various applications in algorithmic group theory and machine learning. In fact, the algorithms form a parameterized family: for each k ∈ ℕ there is a corresponding k-dimensional algorithm WLk. The algorithms become increasingly powerful with increasing dimension, but at the same time the running time increases. The WL-dimension of a graph G is the smallest k ∈ ℕ for which WLk correctly decides isomorphism between G and every other graph. In some sense, the WL-dimension measures how difficult it is to test isomorphism of one graph to others using a fairly general class of combinatorial algorithms. Nowadays, it is a standard measure in descriptive complexity theory for the structural complexity of a graph. We prove that the WL-dimension of a graph on n vertices is at most 3/20 ⋅ n + o(n) = 0.15 ⋅ n + o(n). Reducing the question to coherent configurations, the proof develops various techniques to analyze their structure. This includes sufficient conditions under which a fiber can be restored uniquely up to isomorphism if it is removed, a recursive proof exploiting a degree reduction and treewidth bounds, as well as an exhaustive analysis of interspaces involving small fibers. As a base case, we also analyze the dimension of coherent configurations with small fiber size and thereby graphs with small color class size.

Cite as

Thomas Schneider and Pascal Schweitzer. An Upper Bound on the Weisfeiler-Leman Dimension. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 129:1-129:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{schneider_et_al:LIPIcs.ICALP.2025.129,
  author =	{Schneider, Thomas and Schweitzer, Pascal},
  title =	{{An Upper Bound on the Weisfeiler-Leman Dimension}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{129:1--129:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.129},
  URN =		{urn:nbn:de:0030-drops-235065},
  doi =		{10.4230/LIPIcs.ICALP.2025.129},
  annote =	{Keywords: Weisfeiler-Leman dimension, descriptive complexity, coherent configurations}
}
Document
Residue Domination in Bounded-Treewidth Graphs

Authors: Jakob Greilhuber, Philipp Schepper, and Philip Wellnitz

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)


Abstract
For the vertex selection problem (σ,ρ)-DomSet one is given two fixed sets σ and ρ of integers and the task is to decide whether we can select vertices of the input graph such that, for every selected vertex, the number of selected neighbors is in σ and, for every unselected vertex, the number of selected neighbors is in ρ [Telle, Nord. J. Comp. 1994]. This framework covers many fundamental graph problems such as Independent Set and Dominating Set. We significantly extend the recent result by Focke et al. [SODA 2023] to investigate the case when σ and ρ are two (potentially different) residue classes modulo m ≥ 2. We study the problem parameterized by treewidth and present an algorithm that solves in time m^tw ⋅ n^O(1) the decision, minimization and maximization version of the problem. This significantly improves upon the known algorithms where for the case m ≥ 3 not even an explicit running time is known. We complement our algorithm by providing matching lower bounds which state that there is no (m-ε)^pw ⋅ n^O(1)-time algorithm parameterized by pathwidth pw, unless SETH fails. For m = 2, we extend these bounds to the minimization version as the decision version is efficiently solvable.

Cite as

Jakob Greilhuber, Philipp Schepper, and Philip Wellnitz. Residue Domination in Bounded-Treewidth Graphs. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 41:1-41:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{greilhuber_et_al:LIPIcs.STACS.2025.41,
  author =	{Greilhuber, Jakob and Schepper, Philipp and Wellnitz, Philip},
  title =	{{Residue Domination in Bounded-Treewidth Graphs}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{41:1--41:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.41},
  URN =		{urn:nbn:de:0030-drops-228675},
  doi =		{10.4230/LIPIcs.STACS.2025.41},
  annote =	{Keywords: Parameterized Complexity, Treewidth, Generalized Dominating Set, Strong Exponential Time Hypothesis}
}
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