18 Search Results for "Clarke, Steven"

Document
DOI: 10.4230/LIPIcs.CSL.2026.23
A Logic for Fresh Labelled Transition Systems

Authors: Mohamed H. Bandukara and Nikos Tzevelekos

Published in: LIPIcs, Volume 363, 34th EACSL Annual Conference on Computer Science Logic (CSL 2026)

Abstract
We introduce a Hennessy-Milner logic with recursion for Fresh Labelled Transition Systems (FLTSs). These are nominal labelled transition systems which keep track of the history, i.e. of data values seen so far, and can model fresh data generation. In particular, FLTSs generalise the computations of Fresh-Register Automata, which in turn can be seen as a "regular" class of history-tracking automata operating on infinite input alphabets. The logic we introduce is a modal mu-calculus equipped with infinite disjunctions over arbitrary and fresh data values respectively, while its recursion is parameterised on vectors of data values. It can express a variety of properties, such as the existence of an infinite path of distinct data values, the absence of paths where values are repeated, or the existence of a finite path where some taint property is violated. We study the model-checking problem and its complexity via a reduction to parity games and, using nominal sets techniques, provide an exponential upper bound for it.
Cite as

Mohamed H. Bandukara and Nikos Tzevelekos. A Logic for Fresh Labelled Transition Systems. In 34th EACSL Annual Conference on Computer Science Logic (CSL 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 363, pp. 23:1-23:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{bandukara_et_al:LIPIcs.CSL.2026.23,
  author =	{Bandukara, Mohamed H. and Tzevelekos, Nikos},
  title =	{{A Logic for Fresh Labelled Transition Systems}},
  booktitle =	{34th EACSL Annual Conference on Computer Science Logic (CSL 2026)},
  pages =	{23:1--23:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-411-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{363},
  editor =	{Guerrini, Stefano and K\"{o}nig, Barbara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2026.23},
  URN =		{urn:nbn:de:0030-drops-254478},
  doi =		{10.4230/LIPIcs.CSL.2026.23},
  annote =	{Keywords: Nominal Transition Systems, Hennessy-Milner Logic, Modal Mu-Calculus, Register Automata, Nominal Sets, Parity Games}
}
Document
DOI: 10.4230/LIPIcs.FSTTCS.2025.8
Parameterized Verification of Timed Networks with Clock Invariants

Authors: Étienne André, Swen Jacobs, Shyam Lal Karra, and Ocan Sankur

Published in: LIPIcs, Volume 360, 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)

Abstract
We consider parameterized verification problems for networks of timed automata (TAs) based on different communication primitives. To this end, we first consider disjunctive timed networks (DTNs), i.e., networks of TAs that communicate via location guards that enable a transition only if there is another process in a certain location. We solve for the first time the case with unrestricted clock invariants, and establish that the parameterized model checking problem (PMCP) over finite local traces can be reduced to the corresponding model checking problem on a single TA. Moreover, we prove that the PMCP for networks that communicate via lossy broadcast can be reduced to the PMCP for DTNs. Finally, we show that for networks with k-wise synchronization, and therefore also for timed Petri nets, location reachability can be reduced to location reachability in DTNs. As a consequence we can answer positively the open problem from Abdulla et al. (2018) whether the universal safety problem for timed Petri nets with multiple clocks is decidable.
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Étienne André, Swen Jacobs, Shyam Lal Karra, and Ocan Sankur. Parameterized Verification of Timed Networks with Clock Invariants. In 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 360, pp. 8:1-8:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{andre_et_al:LIPIcs.FSTTCS.2025.8,
  author =	{Andr\'{e}, \'{E}tienne and Jacobs, Swen and Karra, Shyam Lal and Sankur, Ocan},
  title =	{{Parameterized Verification of Timed Networks with Clock Invariants}},
  booktitle =	{45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)},
  pages =	{8:1--8:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-406-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{360},
  editor =	{Aiswarya, C. and Mehta, Ruta and Roy, Subhajit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2025.8},
  URN =		{urn:nbn:de:0030-drops-250878},
  doi =		{10.4230/LIPIcs.FSTTCS.2025.8},
  annote =	{Keywords: Networks of Timed Automata, Parameterized Verification, Timed Petri Nets}
}
Document
DOI: 10.4230/LIPIcs.GD.2025.40
An Algorithm for Accurate and Simple-Looking Metaphorical Maps

Authors: Eleni Katsanou, Tamara Mchedlidze, Antonios Symvonis, and Thanos Tolias

Published in: LIPIcs, Volume 357, 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)

Abstract
Metaphorical maps or contact representations are visual representations of vertex-weighted graphs that rely on the geographic map metaphor. The vertices are represented by countries, the weights by the areas of the countries, and the edges by contacts/boundaries among them. The accuracy with which the weights are mapped to areas and the simplicity of the polygons representing the countries are the two classical optimization goals for metaphorical maps. Mchedlidze & Schnorr [Mchedlidze and Schnorr, 2022] presented a force-based algorithm that creates metaphorical maps that balance between these two optimization goals. Their maps look visually simple, but the accuracy of the maps is far from optimal - the countries' areas can vary up to 30% compared to required. In this paper, we provide a multi-fold extension of the algorithm in [Mchedlidze and Schnorr, 2022]. More specifically: 1) Towards improving accuracy: We introduce the notion of region stiffness and suggest a technique for varying the stiffness based on the current pressure of map regions. 2) Towards maintaining simplicity: We introduce a weight coefficient to the pressure force exerted on each polygon point based on whether the corresponding point appears along a narrow passage. 3) Towards generality: We cover, in contrast to [Mchedlidze and Schnorr, 2022], non-triangulated graphs. This is done by either generating points where more than three regions meet or by introducing holes in the metaphorical map. We perform an extended experimental evaluation that, among other results, reveals that our algorithm is able to construct metaphorical maps with nearly perfect area accuracy with a little sacrifice in their simplicity.
Cite as

Eleni Katsanou, Tamara Mchedlidze, Antonios Symvonis, and Thanos Tolias. An Algorithm for Accurate and Simple-Looking Metaphorical Maps. In 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 357, pp. 40:1-40:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{katsanou_et_al:LIPIcs.GD.2025.40,
  author =	{Katsanou, Eleni and Mchedlidze, Tamara and Symvonis, Antonios and Tolias, Thanos},
  title =	{{An Algorithm for Accurate and Simple-Looking Metaphorical Maps}},
  booktitle =	{33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)},
  pages =	{40:1--40:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-403-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{357},
  editor =	{Dujmovi\'{c}, Vida and Montecchiani, Fabrizio},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GD.2025.40},
  URN =		{urn:nbn:de:0030-drops-250268},
  doi =		{10.4230/LIPIcs.GD.2025.40},
  annote =	{Keywords: Metaphorical maps, contact representation, accuracy (cartographic error), simplicity (polygon complexity), force directed algorithm}
}
Document
DOI: 10.4230/LIPIcs.TIME.2025.13
Temporal Ensemble Logic for Integrative Representation of the Entirety of Clinical Trials

Authors: Xiaojin Li, Yan Huang, Rashmie Abeysinghe, Zenan Sun, Hongyu Chen, Pengze Li, Xing He, Shiqiang Tao, Cui Tao, Jiang Bian, Licong Cui, and Guo-Qiang Zhang

Published in: LIPIcs, Volume 355, 32nd International Symposium on Temporal Representation and Reasoning (TIME 2025)

Abstract
Clinical trials are typically specified with protocols that define eligibility criteria, treatment regimens, follow-up schedules, and outcome assessments. Temporality is a hallmark of all clinical trials, reflected within and across trial components, with complex dependencies unfolding across multiple time points. Despite their importance, clinical trial protocols are described in free-text format, limiting their semantic precision and the ability to support automated reasoning, leverage data across studies and sites, or simulate trial execution under varying assumptions using Real-World Data. This paper introduces a formalized representation of clinical trials using Temporal Ensemble Logic (TEL). TEL incorporates metricized modal operators, such as "always until t" (□_t) and "possibly until t" (◇_t), where t is a time-length parameter, to offer a logical framework for capturing phenotypes in biomedicine. TEL is more expressive in syntax than classical linear temporal logic (LTL) while maintaining the simplicity of semantic structures. The attributes of TEL are exploited in this paper to formally represent not only individual clinical trial components, but also the timing and sequential dependencies of these components as a whole. Modeling strategies and demonstration case studies are provided to show that TEL can represent the entirety of clinical trials, whereby providing a formal logical framework that can be used to represent the intricate temporal dependencies in trial structure specification. Since clinical trials are a cornerstone of evidence-based medicine, serving as the scientific basis for evaluating the safety, efficacy, and comparative effectiveness of therapeutic interventions, results reported here can serve as a stepping stone that leads to scalable, consistent, and reproducible representation and simulation of clinical trials across all disease domains.
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Xiaojin Li, Yan Huang, Rashmie Abeysinghe, Zenan Sun, Hongyu Chen, Pengze Li, Xing He, Shiqiang Tao, Cui Tao, Jiang Bian, Licong Cui, and Guo-Qiang Zhang. Temporal Ensemble Logic for Integrative Representation of the Entirety of Clinical Trials. In 32nd International Symposium on Temporal Representation and Reasoning (TIME 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 355, pp. 13:1-13:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{li_et_al:LIPIcs.TIME.2025.13,
  author =	{Li, Xiaojin and Huang, Yan and Abeysinghe, Rashmie and Sun, Zenan and Chen, Hongyu and Li, Pengze and He, Xing and Tao, Shiqiang and Tao, Cui and Bian, Jiang and Cui, Licong and Zhang, Guo-Qiang},
  title =	{{Temporal Ensemble Logic for Integrative Representation of the Entirety of Clinical Trials}},
  booktitle =	{32nd International Symposium on Temporal Representation and Reasoning (TIME 2025)},
  pages =	{13:1--13:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-401-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{355},
  editor =	{Vidal, Thierry and Wa{\l}\k{e}ga, Przemys{\l}aw Andrzej},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.TIME.2025.13},
  URN =		{urn:nbn:de:0030-drops-244595},
  doi =		{10.4230/LIPIcs.TIME.2025.13},
  annote =	{Keywords: Temporal ensemble logic, Clinical trials, Logic-based modeling}
}
Document
DOI: 10.4230/OASIcs.SpaceCHI.2025.18
Advancing Intelligent Personal Assistants for Human Spaceflight

Authors: Leonie Bensch, Oliver Bensch, and Tommy Nilsson

Published in: OASIcs, Volume 130, Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)

Abstract
The Artemis program and upcoming missions to Mars mark a new era of human space exploration that will require new tools to support astronaut autonomy in the absence of real-time communication with Earth. This paper investigates the role of voice-based intelligent personal assistants (IPAs) in future crewed space missions. Through semi-structured interviews with astronauts (n=3) and spaceflight experts (n=12), we identify key user-centered design requirements for IPAs in this uniquely constrained and safety-critical environment. Our thematic analysis reveals core requirements for flexibility, reliability, offline capability, and multimodal interaction. Drawing on these findings, we outline design guidelines for next-generation IPAs and discuss how technologies such as retrieval-augmented generation (RAG), knowledge graphs, and augmented reality should be combined to support flexible, reliable, and multimodal IPAs for future human spaceflight missions.
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Leonie Bensch, Oliver Bensch, and Tommy Nilsson. Advancing Intelligent Personal Assistants for Human Spaceflight. In Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025). Open Access Series in Informatics (OASIcs), Volume 130, pp. 18:1-18:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bensch_et_al:OASIcs.SpaceCHI.2025.18,
  author =	{Bensch, Leonie and Bensch, Oliver and Nilsson, Tommy},
  title =	{{Advancing Intelligent Personal Assistants for Human Spaceflight}},
  booktitle =	{Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)},
  pages =	{18:1--18:18},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-384-3},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{130},
  editor =	{Bensch, Leonie and Nilsson, Tommy and Nisser, Martin and Pataranutaporn, Pat and Schmidt, Albrecht and Sumini, Valentina},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SpaceCHI.2025.18},
  URN =		{urn:nbn:de:0030-drops-240082},
  doi =		{10.4230/OASIcs.SpaceCHI.2025.18},
  annote =	{Keywords: Conversational Assistant, Intelligent Personal Assistant, Artificial Intelligence, Astronaut, Human Spaceflight, Generative Pre-Trained Transformer (GPT), Retrieval Augmented Generation (RAG), Knowledge Graphs, Augmented Reality, Voice Assistant, Long Duration Spaceflight}
}
Document
DOI: 10.4230/OASIcs.SpaceCHI.2025.20
Navigating Exoplanetary Systems in Augmented Reality: Preliminary Insights on ExoAR

Authors: Bryson Lawton, Frank Maurer, and Daniel Zielasko

Published in: OASIcs, Volume 130, Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)

Abstract
With thousands of exoplanets now confirmed by space missions such as NASA’s Kepler and TESS, scientific interest and public curiosity about these distant worlds continue to grow. However, current visualization tools for exploring exoplanetary systems often lack sufficient scientific accuracy or interactive features, limiting their educational effectiveness and analytical utility. To help address this gap, we developed ExoAR, an augmented reality tool designed to offer immersive, scientifically sound visualizations of all known exoplanetary systems using data directly sourced from NASA’s Exoplanet Archive. By leveraging augmented reality’s strengths, ExoAR enables users to immerse themselves in interactive, dynamic 3D models of these planetary systems with data-driven representations of planets and their host stars. The application also allows users to adjust various visualization scales independently, a capability designed to aid comprehension of comparative astronomical properties such as orbital mechanics, planetary sizes, and stellar classifications. To begin assessing ExoAR’s potential as an educational and analytical tool and inform future iterations, a pilot user study was conducted. Its findings indicate that participants found ExoAR improved user engagement and spatial understanding compared to NASA’s Eyes on Exoplanets application, a non-immersive exoplanetary system visualization tool. This work-in-progress paper presents these early insights, acknowledges current system limitations, and outlines future directions for more rigorously evaluating and further improving ExoAR’s capabilities for both educational and scientific communities.
Cite as

Bryson Lawton, Frank Maurer, and Daniel Zielasko. Navigating Exoplanetary Systems in Augmented Reality: Preliminary Insights on ExoAR. In Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025). Open Access Series in Informatics (OASIcs), Volume 130, pp. 20:1-20:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lawton_et_al:OASIcs.SpaceCHI.2025.20,
  author =	{Lawton, Bryson and Maurer, Frank and Zielasko, Daniel},
  title =	{{Navigating Exoplanetary Systems in Augmented Reality: Preliminary Insights on ExoAR}},
  booktitle =	{Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)},
  pages =	{20:1--20:13},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-384-3},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{130},
  editor =	{Bensch, Leonie and Nilsson, Tommy and Nisser, Martin and Pataranutaporn, Pat and Schmidt, Albrecht and Sumini, Valentina},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SpaceCHI.2025.20},
  URN =		{urn:nbn:de:0030-drops-240106},
  doi =		{10.4230/OASIcs.SpaceCHI.2025.20},
  annote =	{Keywords: Immersive Analytics, Data Visualization, Astronomy, Astrophysics, Exoplanet, Augmented Reality, AR}
}
Document
DOI: 10.4230/LIPIcs.CONCUR.2025.22
Partial-Order Reduction Is Hard

Authors: Frédéric Herbreteau, Sarah Larroze-Jardiné, and Igor Walukiewicz

Published in: LIPIcs, Volume 348, 36th International Conference on Concurrency Theory (CONCUR 2025)

Abstract
The goal of partial-order methods is to accelerate the exploration of concurrent systems by examining only a representative subset of all possible runs. The stateful approach builds a transition system with representative runs, while the stateless method simply enumerates them. The stateless approach may be preferable if the transition system is tree-like; otherwise, the stateful method is more effective. In the last decade, optimality has been a guiding principle for developing stateless partial-order reduction algorithms, and without doubt contributed to big progress in the field. In this paper we ask if we can get a similar principle for the stateful approach. We show that in stateful exploration, a polynomially close to optimal partial-order algorithm cannot exist unless P=NP. The result holds even for acyclic programs with just await instructions. This lower bound result justifies systematic study of heuristics for stateful partial-order reduction. We propose a notion of IFS oracle as a useful abstraction. The oracle can be used to get a very simple optimal stateless algorithm, which can then be adapted to a non-optimal stateful algorithm. While in general the oracle problem is NP-hard, we show a simple case where it can be solved in linear time.
Cite as

Frédéric Herbreteau, Sarah Larroze-Jardiné, and Igor Walukiewicz. Partial-Order Reduction Is Hard. In 36th International Conference on Concurrency Theory (CONCUR 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 348, pp. 22:1-22:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{herbreteau_et_al:LIPIcs.CONCUR.2025.22,
  author =	{Herbreteau, Fr\'{e}d\'{e}ric and Larroze-Jardin\'{e}, Sarah and Walukiewicz, Igor},
  title =	{{Partial-Order Reduction Is Hard}},
  booktitle =	{36th International Conference on Concurrency Theory (CONCUR 2025)},
  pages =	{22:1--22:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-389-8},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{348},
  editor =	{Bouyer, Patricia and van de Pol, Jaco},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CONCUR.2025.22},
  URN =		{urn:nbn:de:0030-drops-239727},
  doi =		{10.4230/LIPIcs.CONCUR.2025.22},
  annote =	{Keywords: Formal verification, Concurrent systems, Partial-order reduction, Complexity}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.10
DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs

Authors: Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Determining the distance between two loci within a genomic region is a recurrent operation in various tasks in computational genomics. A notable example of this task arises in paired-end read mapping as a form of validation of distances between multiple alignments. While straightforward for a single genome, graph-based reference structures render the operation considerably more involved. Given the sheer number of such queries in a typical read mapping experiment, an efficient algorithm for answering distance queries is crucial. In this paper, we introduce DiVerG, a compact data structure as well as a fast and scalable algorithm, for constructing distance indexes for general sequence graphs on multi-core CPU and many-core GPU architectures. DiVerG is based on PairG [Jain et al., 2019], but overcomes the limitations of PairG by exploiting the extensive potential for improvements in terms of scalability and space efficiency. As a consequence, DiVerG can process substantially larger datasets, such as whole human genomes, which are unmanageable by PairG. DiVerG offers faster index construction time and consistently faster query time with gains proportional to the size of the underlying compact data structure. We demonstrate that our method performs favorably on multiple real datasets at various scales. DiVerG achieves superior performance over PairG; e.g. resulting to 2.5-4x speed-up in query time, 44-340x smaller index size, and 3-50x faster construction time for the genome graph of the MHC region, as a particularly variable region of the human genome. The implementation is available at: https://github.com/cartoonist/diverg
Cite as

Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall. DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 10:1-10:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ghaffaari_et_al:LIPIcs.WABI.2025.10,
  author =	{Ghaffaari, Ali and Sch\"{o}nhuth, Alexander and Marschall, Tobias},
  title =	{{DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{10:1--10:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.10},
  URN =		{urn:nbn:de:0030-drops-239369},
  doi =		{10.4230/LIPIcs.WABI.2025.10},
  annote =	{Keywords: Sequence graph, distance index, read mapping, sparse matrix}
}
Document
DOI: 10.4230/LIPIcs.CP.2025.19
Analyzing Self-Stabilization of Synchronous Unison via Propositional Satisfiability

Authors: Asma Khoualdia, Sami Cherif, Stéphane Devismes, and Léo Robert

Published in: LIPIcs, Volume 340, 31st International Conference on Principles and Practice of Constraint Programming (CP 2025)

Abstract
Synchronous unison is a classical clock synchronization problem in distributed computing, and especially in self-stabilization. This paper explores the self-stabilization of a synchronous unison algorithm proposed by Arora et al. using a propositional satisfiability-based approach. We give a logical formulation of the algorithm. This formulation includes the uniqueness of clock values at each node, the updates of clocks based on the minimum clock value in the neighborhood, and the detection of convergence or divergence. To optimize the models, additional constraints are introduced to reduce redundant cases of initial configurations to be analyzed. Our approach not only verifies the algorithm’s behaviour but also offers insights into enhancing its robustness and applicability to broader distributed systems.
Cite as

Asma Khoualdia, Sami Cherif, Stéphane Devismes, and Léo Robert. Analyzing Self-Stabilization of Synchronous Unison via Propositional Satisfiability. In 31st International Conference on Principles and Practice of Constraint Programming (CP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 340, pp. 19:1-19:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{khoualdia_et_al:LIPIcs.CP.2025.19,
  author =	{Khoualdia, Asma and Cherif, Sami and Devismes, St\'{e}phane and Robert, L\'{e}o},
  title =	{{Analyzing Self-Stabilization of Synchronous Unison via Propositional Satisfiability}},
  booktitle =	{31st International Conference on Principles and Practice of Constraint Programming (CP 2025)},
  pages =	{19:1--19:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-380-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{340},
  editor =	{de la Banda, Maria Garcia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CP.2025.19},
  URN =		{urn:nbn:de:0030-drops-238806},
  doi =		{10.4230/LIPIcs.CP.2025.19},
  annote =	{Keywords: Self-stabilization, Synchronous Unison, Satisfiability}
}
Document
DOI: 10.4230/LIPIcs.SAT.2025.15
RustSAT: A Library for SAT Solving in Rust

Authors: Christoph Jabs

Published in: LIPIcs, Volume 341, 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)

Abstract
State-of-the-art Boolean satisfiability (SAT) solvers constitute a practical and competitive approach for solving various real-world problems. To encourage their widespread adoption, the relatively high barrier of entry following from the low level syntax of SAT and the expert knowledge required to achieve tight integration with SAT solvers should be further reduced. We present RustSAT, a library with the aim of making SAT solving technology readily available in the Rust programming language. RustSAT provides functionality for helping with generating (Max)SAT instances, writing them to, or reading them from files. Furthermore, RustSAT includes interfaces to various state-of-the-art SAT solvers available with a unified Rust API. Lastly, RustSAT implements several encodings for higher level constraints (at-most-one, cardinality, and pseudo-Boolean), which are also available via a C and Python API.
Cite as

Christoph Jabs. RustSAT: A Library for SAT Solving in Rust. In 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 341, pp. 15:1-15:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{jabs:LIPIcs.SAT.2025.15,
  author =	{Jabs, Christoph},
  title =	{{RustSAT: A Library for SAT Solving in Rust}},
  booktitle =	{28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)},
  pages =	{15:1--15:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-381-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{341},
  editor =	{Berg, Jeremias and Nordstr\"{o}m, Jakob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAT.2025.15},
  URN =		{urn:nbn:de:0030-drops-237498},
  doi =		{10.4230/LIPIcs.SAT.2025.15},
  annote =	{Keywords: Rust, library, SAT solvers, constraint encodings}
}
Document
DOI: 10.4230/LIPIcs.SAT.2025.8
Certifying Projected Knowledge Compilation

Authors: Randal E. Bryant, Yong Kiam Tan, and Marijn J. H. Heule

Published in: LIPIcs, Volume 341, 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)

Abstract
Knowledge compilers convert Boolean formulas, given in conjunctive normal form (CNF), into representations that enable efficient evaluation of unweighted and weighted model counts, as well as a variety of other useful properties. With projected knowledge compilation, the generated representation describes the restriction of the formula to a designated set of data variables, with the remaining ones eliminated by existential quantification. Projected knowledge compilation has applications in a variety of domains, including formal verification and synthesis. This paper describes a formally verified proof framework for certifying the output of a projected knowledge compiler. It builds on an earlier clausal proof framework for certifying the output of a standard knowledge compiler. Extending the framework to projected compilation requires a method to represent Skolem assignments, describing how the quantified variables can be assigned, given an assignment for the data variables. We do so by extending the representation generated by the knowledge compiler to also encode Skolem assignments. We also refine the earlier framework, moving beyond purely clausal proofs to enable scaling certification to larger formulas. We present experimental results obtained by making small modifications to the D4 projected knowledge compiler and extensions of our earlier proof generator. We detail a soundness argument stating that a compiler output that passes our certifier is logically equivalent to the quantified input formula; the soundness argument has been formally validated using the HOL4 proof assistant. The checker also ensures that the compiler output satisfies the properties required for efficient unweighted and weighted model counting. We have developed two proof checkers for the certification framework: one written in C and designed for high performance and one written in CakeML and formally verified in HOL4.
Cite as

Randal E. Bryant, Yong Kiam Tan, and Marijn J. H. Heule. Certifying Projected Knowledge Compilation. In 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 341, pp. 8:1-8:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bryant_et_al:LIPIcs.SAT.2025.8,
  author =	{Bryant, Randal E. and Tan, Yong Kiam and Heule, Marijn J. H.},
  title =	{{Certifying Projected Knowledge Compilation}},
  booktitle =	{28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)},
  pages =	{8:1--8:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-381-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{341},
  editor =	{Berg, Jeremias and Nordstr\"{o}m, Jakob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAT.2025.8},
  URN =		{urn:nbn:de:0030-drops-237422},
  doi =		{10.4230/LIPIcs.SAT.2025.8},
  annote =	{Keywords: Knowledge Compilation, Propositional model counting, Proof checking}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.3
Pydrofoil: Accelerating Sail-Based Instruction Set Simulators

Authors: Carl Friedrich Bolz-Tereick, Luke Panayi, Ferdia McKeogh, Tom Spink, and Martin Berger

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
We present Pydrofoil, a multi-stage compiler that generates instruction set simulators (ISSs) from processor instruction set architectures (ISAs) expressed in the high-level, verification-oriented ISA specification language Sail. Pydrofoil achieves a > 230× speedup over the C-based ISS generated by Sail on our benchmarks, thanks to the following insights. (i) An ISS is effectively an interpreter loop, and tracing just-in-time (JIT) compilers have proven effective at accelerating those, albeit mostly for dynamically typed languages. (ii) ISS workloads are highly atypical, dominated by intensive bit manipulation operations. Conventional compiler optimisations for general-purpose programming languages have limited impact for speeding up such workloads. We develop suitable domain-specific optimisations. (iii) Neither tracing JIT compilers, nor ahead-of-time (AOT) compilation alone, even with domain-specific optimisations, suffice for the generation of performant ISSs. Pydrofoil therefore implements a hybrid approach, pairing an AOT compiler with a tracing JIT built on the meta-tracing PyPy framework. AOT and JIT use domain-specific optimisations. Our benchmarks demonstrate that combining AOT and JIT compilers provides significantly greater performance gains than using either compiler alone.
Cite as

Carl Friedrich Bolz-Tereick, Luke Panayi, Ferdia McKeogh, Tom Spink, and Martin Berger. Pydrofoil: Accelerating Sail-Based Instruction Set Simulators. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 3:1-3:31, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bolztereick_et_al:LIPIcs.ECOOP.2025.3,
  author =	{Bolz-Tereick, Carl Friedrich and Panayi, Luke and McKeogh, Ferdia and Spink, Tom and Berger, Martin},
  title =	{{Pydrofoil: Accelerating Sail-Based Instruction Set Simulators}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{3:1--3:31},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.3},
  URN =		{urn:nbn:de:0030-drops-232962},
  doi =		{10.4230/LIPIcs.ECOOP.2025.3},
  annote =	{Keywords: Instruction set architecture, processor, domain-specific language, just-in-time compilation, meta-tracing}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.18
Practical Type-Based Taint Checking and Inference

Authors: Nima Karimipour, Kanak Das, Manu Sridharan, and Behnaz Hassanshahi

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Many important security properties can be formulated in terms of flows of tainted data, and improved taint analysis tools to prevent such flows are of critical need. Most existing taint analyses use whole-program static analysis, leading to scalability challenges. Type-based checking is a promising alternative, as it enables modular and incremental checking for fast performance. However, type-based approaches have not been widely adopted in practice, due to challenges with false positives and annotating existing codebases. In this paper, we present a new approach to type-based checking of taint properties that addresses these challenges, based on two key techniques. First, we present a new type-based tainting checker with significantly reduced false positives, via more practical handling of third-party libraries and other language constructs. Second, we present a novel technique to automatically infer tainting type qualifiers for existing code. Our technique supports inference of generic type argument annotations, crucial for tainting properties. We implemented our techniques in a tool TaintTyper and evaluated it on real-world benchmarks. TaintTyper exceeds the recall of a state-of-the-art whole-program taint analyzer, with comparable precision, and 2.93X-22.9X faster checking time. Further, TaintTyper infers annotations comparable to those written by hand, suitable for insertion into source code. TaintTyper is a promising new approach to efficient and practical taint checking.
Cite as

Nima Karimipour, Kanak Das, Manu Sridharan, and Behnaz Hassanshahi. Practical Type-Based Taint Checking and Inference. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 18:1-18:25, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{karimipour_et_al:LIPIcs.ECOOP.2025.18,
  author =	{Karimipour, Nima and Das, Kanak and Sridharan, Manu and Hassanshahi, Behnaz},
  title =	{{Practical Type-Based Taint Checking and Inference}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{18:1--18:25},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.18},
  URN =		{urn:nbn:de:0030-drops-233119},
  doi =		{10.4230/LIPIcs.ECOOP.2025.18},
  annote =	{Keywords: Static analysis, Taint Analysis, Pluggable type systems, Security, Inference}
}
Document
DOI: 10.4230/LITES.10.1.2
Towards a Coq-verified Chain of Esterel Semantics

Authors: Lionel Rieg and Gérard Berry

Published in: LITES, Volume 10, Issue 1 (2025). Leibniz Transactions on Embedded Systems, Volume 10, Issue 1

Abstract
This article focuses on formally specifying and verifying the chain of formal semantics of the Esterel synchronous programming language using the Coq proof assistant. In particular, in addition to the standard logical (LBS) semantics, constructive semantics (CBS) and constructive state semantics (CSS), we introduce a novel microstep semantics that gets rid of the Must/Can potential function pair of the constructive semantics and can be viewed as an abstract version of Esterel’s circuit semantics used by compilers to generate software code and hardware designs. The article also comes with formal proofs in Coq of the equivalence between the CBS and CSS semantics and of the refinement of the CSS by the microstep semantics, except for the loop construct of Esterel.
Cite as

Lionel Rieg and Gérard Berry. Towards a Coq-verified Chain of Esterel Semantics. In LITES, Volume 10, Issue 1 (2025). Leibniz Transactions on Embedded Systems, Volume 10, Issue 1, pp. 2:1-2:54, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{rieg_et_al:LITES.10.1.2,
  author =	{Rieg, Lionel and Berry, G\'{e}rard},
  title =	{{Towards a Coq-verified Chain of Esterel Semantics}},
  journal =	{Leibniz Transactions on Embedded Systems},
  pages =	{2:1--2:54},
  ISSN =	{2199-2002},
  year =	{2025},
  volume =	{10},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LITES.10.1.2},
  URN =		{urn:nbn:de:0030-drops-230144},
  doi =		{10.4230/LITES.10.1.2},
  annote =	{Keywords: Esterel programming language, formal verification, Coq proof assistant}
}
Document
DOI: 10.4230/OASIcs.Gabbrielli.10
Inseguendo Fagiani Selvatici: Partial Order Reduction for Guarded Command Languages

Authors: Frank S. de Boer, Einar Broch Johnsen, Rudolf Schlatte, Silvia Lizeth Tapia Tarifa, and Lars Tveito

Published in: OASIcs, Volume 86, Recent Developments in the Design and Implementation of Programming Languages (2020)

Abstract
This paper presents a method for testing whether objects in actor languages and active object languages exhibit locally deterministic behavior. We investigate such a method for a class of guarded command programs, abstracting from object-oriented features like method calls but focusing on cooperative scheduling of dynamically spawned processes executing in parallel. The proposed method can answer questions such as whether all permutations of an execution trace are equivalent, by generating candidate traces for testing which may lead to different final states. To prune the set of candidate traces, we employ partial order reduction. To further reduce the set, we introduce an analysis technique to decide whether a generated trace is schedulable. Schedulability cannot be decided for guarded commands using standard dependence and interference relations because guard enabledness is non-monotonic. To solve this problem, we use concolic execution to produce linearized symbolic traces of the executed program, which allows a weakest precondition computation to decide on the satisfiability of guards.
Cite as

Frank S. de Boer, Einar Broch Johnsen, Rudolf Schlatte, Silvia Lizeth Tapia Tarifa, and Lars Tveito. Inseguendo Fagiani Selvatici: Partial Order Reduction for Guarded Command Languages. In Recent Developments in the Design and Implementation of Programming Languages. Open Access Series in Informatics (OASIcs), Volume 86, pp. 10:1-10:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

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@InProceedings{deboer_et_al:OASIcs.Gabbrielli.10,
  author =	{de Boer, Frank S. and Johnsen, Einar Broch and Schlatte, Rudolf and Tapia Tarifa, Silvia Lizeth and Tveito, Lars},
  title =	{{Inseguendo Fagiani Selvatici: Partial Order Reduction for Guarded Command Languages}},
  booktitle =	{Recent Developments in the Design and Implementation of Programming Languages},
  pages =	{10:1--10:18},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-171-9},
  ISSN =	{2190-6807},
  year =	{2020},
  volume =	{86},
  editor =	{de Boer, Frank S. and Mauro, Jacopo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Gabbrielli.10},
  URN =		{urn:nbn:de:0030-drops-132322},
  doi =		{10.4230/OASIcs.Gabbrielli.10},
  annote =	{Keywords: Testing, Symbolic Traces, Guarded Commands, Partial Order Reduction}
}
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