28 Search Results for "Horn, Paul"

Document
DOI: 10.4230/LIPIcs.IPEC.2025.25
Exact Algorithms and Hardness Result for the Boolean Connectivity Problem of k-Horn Formulas

Authors: Takashi Horiyama, Yuto Okura, Kazuhisa Seto, and Junichi Teruyama

Published in: LIPIcs, Volume 358, 20th International Symposium on Parameterized and Exact Computation (IPEC 2025)

Abstract
The Boolean connectivity problem asks whether the set of satisfying assignments of a given Boolean formula forms a connected subgraph in the n-dimensional hypercube. This problem is known to be coNP-complete, even when restricted to k-Horn formulas for k ≥ 3, as shown by Makino, Tamaki, and Yamamoto. In this paper, we further investigate the complexity of the Boolean connectivity problem for k-Horn formulas, referred to as Conn k-Horn. We first present an exact exponential-time algorithm for Conn k-Horn without any structural restrictions. Our algorithm builds on the deterministic PPZ algorithm proposed by Paturi, Pudlák, and Zane. It runs in O^*(2^{(1-1/2k)n}) time, achieving an exponential improvement over the previously known algorithm for the Boolean connectivity problem of k-CNF formulas, shown by Makino, Tamaki, and Yamamoto. We then examine both algorithmic and hardness results for Conn 3-Horn under bounded variable occurrences. On the algorithmic side, we propose a polynomial-time algorithm for Conn 3-Horn when each clause contains exactly three literals and each variable appears at most three times. This result generalizes to Conn k-Horn under the same structural constraints, in which each clause contains exactly k literals and each variable appears at most k times. On the hardness side, we prove that Conn 3-Horn remains coNP-complete even when restricted to instances in which each variable appears exactly four times.
Cite as

Takashi Horiyama, Yuto Okura, Kazuhisa Seto, and Junichi Teruyama. Exact Algorithms and Hardness Result for the Boolean Connectivity Problem of k-Horn Formulas. In 20th International Symposium on Parameterized and Exact Computation (IPEC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 358, pp. 25:1-25:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{horiyama_et_al:LIPIcs.IPEC.2025.25,
  author =	{Horiyama, Takashi and Okura, Yuto and Seto, Kazuhisa and Teruyama, Junichi},
  title =	{{Exact Algorithms and Hardness Result for the Boolean Connectivity Problem of k-Horn Formulas}},
  booktitle =	{20th International Symposium on Parameterized and Exact Computation (IPEC 2025)},
  pages =	{25:1--25:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-407-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{358},
  editor =	{Agrawal, Akanksha and van Leeuwen, Erik Jan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2025.25},
  URN =		{urn:nbn:de:0030-drops-251577},
  doi =		{10.4230/LIPIcs.IPEC.2025.25},
  annote =	{Keywords: k-Horn, Boolean connectivity, bounded variable occurrence, hardness, exact algorithm, satisfiability}
}
Document
DOI: 10.4230/LIPIcs.FSTTCS.2025.5
Distributed Games with a Central Decision Maker

Authors: Bharat Adsul and Nehul Jain

Published in: LIPIcs, Volume 360, 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)

Abstract
We study distributed games played on non-deterministic asynchronous automata which feature a central decision maker process that participates in all key decision making tasks. In these partial-information games, processes use their causal past to respond to scheduling choices made by the scheduler and cooperatively strategize as a team to achieve the winning objective. We show that the problem of deciding the existence of a distributed winning strategy is efficiently solvable for global safety and local parity objectives. We provide algorithmic solutions that match their computational hardness. We formulate the notion of a finite-state distributed strategy which allows to quantify its distributed memory requirements. For the aforementioned objectives, we establish that finite-state distributed winning strategies always exist. In fact, we provide novel constructions of such winning strategies which are shown to have almost optimal amount of distributed memory. We also show that a natural extension of the model with two decision making processes is undecidable.
Cite as

Bharat Adsul and Nehul Jain. Distributed Games with a Central Decision Maker. In 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 360, pp. 5:1-5:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{adsul_et_al:LIPIcs.FSTTCS.2025.5,
  author =	{Adsul, Bharat and Jain, Nehul},
  title =	{{Distributed Games with a Central Decision Maker}},
  booktitle =	{45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)},
  pages =	{5:1--5:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-406-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{360},
  editor =	{Aiswarya, C. and Mehta, Ruta and Roy, Subhajit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2025.5},
  URN =		{urn:nbn:de:0030-drops-250843},
  doi =		{10.4230/LIPIcs.FSTTCS.2025.5},
  annote =	{Keywords: Mazurkiewicz traces, models of concurrency, distributed synthesis, game-theoretic models, asynchronous automata, distributed decision-making}
}
Document
Invited Paper
DOI: 10.4230/OASIcs.RW.2024/2025.7
Modern Datalog: Concepts, Methods, Applications (Invited Paper)

Authors: Markus Krötzsch

Published in: OASIcs, Volume 138, Joint Proceedings of the 20th and 21st Reasoning Web Summer Schools (RW 2024 & RW 2025)

Abstract
Pure Datalog is arguably the most fundamental rule language, elegant and simple, but also often too limited to be useful in practice. This has motivated the introduction of many new expressive features, ranging from datatypes and related functions, over aggregates and semi-ring generalisations, to existential quantifiers and complex terms. In spite of their variety, all these approaches remain true to the nature of Datalog as a direct, pattern-based way of computing on structured data. We therefore find that a modern notion of Datalog is emerging, distinctly different from other approaches of logic programming and with its own set of related methods and applications. In this course, we introduce Datalog and its most common extensions, and explain when and how these features can be used together (which is often, but not always, safe to do). We further look at modern Datalog systems and some of their primary use cases. Hands-on work with Datalog and its extensions is done with the free Datalog engine https://knowsys.github.io/nemo-doc/. The course is accessible to all audiences and does not assume specific prior knowledge.
Cite as

Markus Krötzsch. Modern Datalog: Concepts, Methods, Applications (Invited Paper). In Joint Proceedings of the 20th and 21st Reasoning Web Summer Schools (RW 2024 & RW 2025). Open Access Series in Informatics (OASIcs), Volume 138, pp. 7:1-7:41, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{krotzsch:OASIcs.RW.2024/2025.7,
  author =	{Kr\"{o}tzsch, Markus},
  title =	{{Modern Datalog: Concepts, Methods, Applications}},
  booktitle =	{Joint Proceedings of the 20th and 21st Reasoning Web Summer Schools (RW 2024 \& RW 2025)},
  pages =	{7:1--7:41},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-405-5},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{138},
  editor =	{Artale, Alessandro and Bienvenu, Meghyn and Garc{\'\i}a, Yazm{\'\i}n Ib\'{a}\~{n}ez and Murlak, Filip},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.RW.2024/2025.7},
  URN =		{urn:nbn:de:0030-drops-250524},
  doi =		{10.4230/OASIcs.RW.2024/2025.7},
  annote =	{Keywords: Datalog, query language, knowlegde representation and reasoning, logic programming, Horn logic, SPARQL, datatypes and aggregation, lecture notes, tutorial}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.24
Enumerating the Irreducible Closed Sets of an Acyclic Implicational Base of Bounded Degree

Authors: Oscar Defrain, Arthur Ohana, and Simon Vilmin

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
We consider the problem of enumerating the irreducible closed sets of a closure system given by an implicational base. To date, the complexity status of this problem is widely open, and it is further known to generalize the notorious hypergraph dualization problem, even in the case of acyclic convex geometries, i.e., closure systems admitting an acyclic implicational base. This paper studies this case with a focus on the degree, which corresponds to the maximal number of implications in which an element occurs. We show that the problem is tractable for bounded values of this parameter, even when relaxed to the notions of premise- and conclusion-degree. Our algorithms rely on a sequential approach leveraging from acyclicity, combined with the solution graph traversal technique for the case of premise-degree. They are shown to perform in incremental-polynomial time. These results are complemented in the long version of this document by showing that the dual problem of constructing the implicational base can be solved in polynomial time. Finally, we argue that our running times cannot be improved to polynomial delay using the standard framework of flashlight search.
Cite as

Oscar Defrain, Arthur Ohana, and Simon Vilmin. Enumerating the Irreducible Closed Sets of an Acyclic Implicational Base of Bounded Degree. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 24:1-24:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{defrain_et_al:LIPIcs.ISAAC.2025.24,
  author =	{Defrain, Oscar and Ohana, Arthur and Vilmin, Simon},
  title =	{{Enumerating the Irreducible Closed Sets of an Acyclic Implicational Base of Bounded Degree}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{24:1--24:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.24},
  URN =		{urn:nbn:de:0030-drops-249321},
  doi =		{10.4230/LIPIcs.ISAAC.2025.24},
  annote =	{Keywords: Algorithmic enumeration, closure systems, acyclic convex geometries, solution graph traversal, flashlight search, extension, hypergraph dualization}
}
Document
DOI: 10.4230/LIPIcs.AFT.2025.1
Cache Timing Leakages in Zero-Knowledge Protocols

Authors: Shibam Mukherjee, Christian Rechberger, and Markus Schofnegger

Published in: LIPIcs, Volume 354, 7th Conference on Advances in Financial Technologies (AFT 2025)

Abstract
The area of modern zero-knowledge proof systems has seen a significant rise in popularity over the last couple of years, with new techniques and optimized constructions emerging on a regular basis. As the field matures, the aspect of implementation attacks becomes more relevant, however side-channel attacks on zero-knowledge proof systems have seen surprisingly little treatment so far. In this paper, we give an overview of potential attack vectors and show that some of the underlying finite field libraries, and implementations of heavily used components like hash functions using them, are vulnerable w.r.t. cache attacks on CPUs. On the positive side, we demonstrate that the computational overhead to protect against these attacks is relatively small.
Cite as

Shibam Mukherjee, Christian Rechberger, and Markus Schofnegger. Cache Timing Leakages in Zero-Knowledge Protocols. In 7th Conference on Advances in Financial Technologies (AFT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 354, pp. 1:1-1:26, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{mukherjee_et_al:LIPIcs.AFT.2025.1,
  author =	{Mukherjee, Shibam and Rechberger, Christian and Schofnegger, Markus},
  title =	{{Cache Timing Leakages in Zero-Knowledge Protocols}},
  booktitle =	{7th Conference on Advances in Financial Technologies (AFT 2025)},
  pages =	{1:1--1:26},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-400-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{354},
  editor =	{Avarikioti, Zeta and Christin, Nicolas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AFT.2025.1},
  URN =		{urn:nbn:de:0030-drops-247201},
  doi =		{10.4230/LIPIcs.AFT.2025.1},
  annote =	{Keywords: zero-knowledge, protocol, cache timing, side-channel, leakage}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.98
Fine-Grained Classification of Detecting Dominating Patterns

Authors: Jonathan Dransfeld, Marvin Künnemann, and Mirza Redzic

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
We consider the following generalization of dominating sets: Let G be a host graph and P be a pattern graph P. A dominating P-pattern in G is a subset S of vertices in G that (1) forms a dominating set in G and (2) induces a subgraph isomorphic to P. The graph theory literature studies the properties of dominating P-patterns for various patterns P, including cliques, matchings, independent sets, cycles and paths. Previous work (Kunnemann, Redzic 2024) obtains algorithms and conditional lower bounds for detecting dominating P-patterns particularly for P being a k-clique, a k-independent set and a k-matching. Their results give conditionally tight lower bounds if k is sufficiently large (where the bound depends the matrix multiplication exponent ω). We ask: Can we obtain a classification of the fine-grained complexity for all patterns P? Indeed, we define a graph parameter ρ(P) such that if ω = 2, then (n^ρ(P) m^{(|V(P)|-ρ(P))/2})^{1±o(1)} is the optimal running time assuming the Orthogonal Vectors Hypothesis, for all patterns P except the triangle K₃. Here, the host graph G has n vertices and m = Θ(n^α) edges, where 1 ≤ α ≤ 2. The parameter ρ(P) is closely related (but sometimes different) to a parameter δ(P) = max_{S ⊆ V(P)} |S|-|N(S)| studied in (Alon 1981) to tightly quantify the maximum number of occurrences of induced subgraphs isomorphic to P. Our results stand in contrast to the lack of a full fine-grained classification of detecting an arbitrary (not necessarily dominating) induced P-pattern.
Cite as

Jonathan Dransfeld, Marvin Künnemann, and Mirza Redzic. Fine-Grained Classification of Detecting Dominating Patterns. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 98:1-98:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{dransfeld_et_al:LIPIcs.ESA.2025.98,
  author =	{Dransfeld, Jonathan and K\"{u}nnemann, Marvin and Redzic, Mirza},
  title =	{{Fine-Grained Classification of Detecting Dominating Patterns}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{98:1--98:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.98},
  URN =		{urn:nbn:de:0030-drops-245679},
  doi =		{10.4230/LIPIcs.ESA.2025.98},
  annote =	{Keywords: fine-grained complexity theory, domination in graphs, subgraph isomorphism, classification theorem, parameterized algorithms}
}
Document
DOI: 10.4230/LIPIcs.WADS.2025.15
Enumerating Minimal Dominating Sets and Variants in Chordal Bipartite Graphs

Authors: Emanuel Castelo, Oscar Defrain, and Guilherme C. M. Gomes

Published in: LIPIcs, Volume 349, 19th International Symposium on Algorithms and Data Structures (WADS 2025)

Abstract
Enumerating minimal dominating sets with polynomial delay in bipartite graphs is a long-standing open problem. To date, even the subcase of chordal bipartite graphs is open, with the best known algorithm due to Golovach, Heggernes, Kanté, Kratsch, Sæther, and Villanger running in incremental-polynomial time. We improve on this result by providing a polynomial delay and space algorithm enumerating minimal dominating sets in chordal bipartite graphs. Additionally, we show that the total and connected variants admit polynomial and incremental-polynomial delay algorithms, respectively, within the same class. This provides an alternative proof of a result by Golovach et al. for total dominating sets, and answers an open question for the connected variant. Finally, we give evidence that the techniques used in this paper cannot be generalized to bipartite graphs for (total) minimal dominating sets, unless P = NP, and show that enumerating minimal connected dominating sets in bipartite graphs is harder than enumerating minimal transversals in general hypergraphs.
Cite as

Emanuel Castelo, Oscar Defrain, and Guilherme C. M. Gomes. Enumerating Minimal Dominating Sets and Variants in Chordal Bipartite Graphs. In 19th International Symposium on Algorithms and Data Structures (WADS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 349, pp. 15:1-15:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{castelo_et_al:LIPIcs.WADS.2025.15,
  author =	{Castelo, Emanuel and Defrain, Oscar and C. M. Gomes, Guilherme},
  title =	{{Enumerating Minimal Dominating Sets and Variants in Chordal Bipartite Graphs}},
  booktitle =	{19th International Symposium on Algorithms and Data Structures (WADS 2025)},
  pages =	{15:1--15:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-398-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{349},
  editor =	{Morin, Pat and Oh, Eunjin},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WADS.2025.15},
  URN =		{urn:nbn:de:0030-drops-242467},
  doi =		{10.4230/LIPIcs.WADS.2025.15},
  annote =	{Keywords: algorithmic enumeration, minimal dominating sets, connected dominating sets, total dominating sets, chordal bipartite graphs, sequential method, polynomial delay}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.31
Games with ω-Automatic Preference Relations

Authors: Véronique Bruyère, Christophe Grandmont, and Jean-François Raskin

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
This paper investigates Nash equilibria (NEs) in multi-player turn-based games on graphs, where player preferences are modeled as ω-automatic relations via deterministic parity automata. Unlike much of the existing literature, which focuses on specific reward functions, our results apply to any preference relation definable by an ω-automatic relation. We analyze the computational complexity of determining the existence of an NE (possibly under some constraints), verifying whether a given strategy profile forms an NE, and checking whether a specific outcome can be realized by an NE. When a (constrained) NE exists, we show that there always exists one with finite-memory strategies. Finally, we explore fundamental properties of ω-automatic relations and their implications in the existence of equilibria.
Cite as

Véronique Bruyère, Christophe Grandmont, and Jean-François Raskin. Games with ω-Automatic Preference Relations. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 31:1-31:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{bruyere_et_al:LIPIcs.MFCS.2025.31,
  author =	{Bruy\`{e}re, V\'{e}ronique and Grandmont, Christophe and Raskin, Jean-Fran\c{c}ois},
  title =	{{Games with \omega-Automatic Preference Relations}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{31:1--31:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.31},
  URN =		{urn:nbn:de:0030-drops-241381},
  doi =		{10.4230/LIPIcs.MFCS.2025.31},
  annote =	{Keywords: Games played on graphs, Nash equilibrium, \omega-automatic relations, \omega-recognizable relations, constrained Nash equilibria existence problem}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.66
Deciding Regular Games: a Playground for Exponential Time Algorithms

Authors: Zihui Liang, Bakh Khoussainov, and Mingyu Xiao

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
Regular games form a well-established class of games for analysis and synthesis of reactive systems. They include colored Muller games, McNaughton games, Muller games, Rabin games, and Streett games. These games are played on directed graphs G where Player 0 and Player 1 play by generating an infinite path ρ through the graph. The winner is determined by specifications put on the set X of vertices in ρ that occur infinitely often. These games are determined, enabling the partitioning of G into two sets Win₀ and Win₁ of winning positions for Player 0 and Player 1, respectively. Numerous algorithms exist that decide instances of regular games, e.g., Muller games, by computing Win₀ and Win₁. In this paper we aim to find general principles for designing uniform algorithms that decide all regular games. For this we utilize various recursive and dynamic programming algorithms that leverage standard notions such as subgames and traps. Importantly, we show that our techniques improve or match the performances of existing algorithms for many instances of regular games.
Cite as

Zihui Liang, Bakh Khoussainov, and Mingyu Xiao. Deciding Regular Games: a Playground for Exponential Time Algorithms. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 66:1-66:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{liang_et_al:LIPIcs.MFCS.2025.66,
  author =	{Liang, Zihui and Khoussainov, Bakh and Xiao, Mingyu},
  title =	{{Deciding Regular Games: a Playground for Exponential Time Algorithms}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{66:1--66:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.66},
  URN =		{urn:nbn:de:0030-drops-241732},
  doi =		{10.4230/LIPIcs.MFCS.2025.66},
  annote =	{Keywords: Regular games, colored Muller games, Rabin games, McNaughton games, Muller games, deciding games}
}
Document
DOI: 10.4230/LIPIcs.DNA.31.4
Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems

Authors: Inhoo Lee, Salvador Buse, and Erik Winfree

Published in: LIPIcs, Volume 347, 31st International Conference on DNA Computing and Molecular Programming (DNA 31) (2025)

Abstract
Many molecular systems are best understood in terms of prototypical species and reactions. The central dogma and related biochemistry are rife with examples: gene i is transcribed into RNA i, which is translated into protein i; kinase n phosphorylates substrate m; protein p dimerizes with protein q. Engineered nucleic acid systems also often have this form: oligonucleotide i hybridizes to complementary oligonucleotide j; signal strand n displaces the output of seesaw gate m; hairpin p triggers the opening of target q. When there are many variants of a small number of prototypes, it can be conceptually cleaner and computationally more efficient to represent the full system in terms of indexed species (e.g. for dimerization, M_p, D_pq) and indexed reactions (M_p + M_q → D_pq). Here, we formalize the Indexed Chemical Reaction Network (ICRN) model and describe a Python software package designed to simulate such systems in the well-mixed and reaction-diffusion settings, using a differentiable programming framework originally developed for large-scale neural network models, taking advantage of GPU acceleration when available. Notably, this framework makes it straightforward to train the models’ initial conditions and rate constants to optimize a target behavior, such as matching experimental data, performing a computation, or exhibiting spatial pattern formation. The natural map of indexed chemical reaction networks onto neural network formalisms provides a tangible yet general perspective for translating concepts and techniques from the theory and practice of neural computation into the design of biomolecular systems.
Cite as

Inhoo Lee, Salvador Buse, and Erik Winfree. Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems. In 31st International Conference on DNA Computing and Molecular Programming (DNA 31). Leibniz International Proceedings in Informatics (LIPIcs), Volume 347, pp. 4:1-4:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{lee_et_al:LIPIcs.DNA.31.4,
  author =	{Lee, Inhoo and Buse, Salvador and Winfree, Erik},
  title =	{{Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems}},
  booktitle =	{31st International Conference on DNA Computing and Molecular Programming (DNA 31)},
  pages =	{4:1--4:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-399-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{347},
  editor =	{Schaeffer, Josie and Zhang, Fei},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.31.4},
  URN =		{urn:nbn:de:0030-drops-238534},
  doi =		{10.4230/LIPIcs.DNA.31.4},
  annote =	{Keywords: Differentiable Programming, Chemical Reaction Networks, Reaction-Diffusion Systems}
}
Document
DOI: 10.4230/LIPIcs.CONCUR.2025.7
Temporal Explorability Games

Authors: Pete Austin, Sougata Bose, Nicolas Mazzocchi, and Patrick Totzke

Published in: LIPIcs, Volume 348, 36th International Conference on Concurrency Theory (CONCUR 2025)

Abstract
Temporal graphs extend ordinary graphs with discrete time that affects the availability of edges. We consider solving games played on temporal graphs where one player aims to explore the graph, i.e., visit all vertices. The complexity depends majorly on two factors: the presence of an adversary and how edge availability is specified. We demonstrate that on static graphs, where edges are always available, solving explorability games is just as hard as solving reachability games. In contrast, on temporal graphs, the complexity of explorability coincides with generalized reachability (NP-complete for one-player and PSPACE-complete for two player games). We show that if temporal graphs are given symbolically, even one-player reachability (and thus explorability and generalized reachability) games are PSPACE-hard. For one player, all these are also solvable in PSPACE and for two players, they are in PSPACE, EXP and EXP, respectively.
Cite as

Pete Austin, Sougata Bose, Nicolas Mazzocchi, and Patrick Totzke. Temporal Explorability Games. In 36th International Conference on Concurrency Theory (CONCUR 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 348, pp. 7:1-7:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{austin_et_al:LIPIcs.CONCUR.2025.7,
  author =	{Austin, Pete and Bose, Sougata and Mazzocchi, Nicolas and Totzke, Patrick},
  title =	{{Temporal Explorability Games}},
  booktitle =	{36th International Conference on Concurrency Theory (CONCUR 2025)},
  pages =	{7:1--7:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-389-8},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{348},
  editor =	{Bouyer, Patricia and van de Pol, Jaco},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CONCUR.2025.7},
  URN =		{urn:nbn:de:0030-drops-239575},
  doi =		{10.4230/LIPIcs.CONCUR.2025.7},
  annote =	{Keywords: Temporal Graphs, Explorability, Reachability, Games}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.10
DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs

Authors: Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Determining the distance between two loci within a genomic region is a recurrent operation in various tasks in computational genomics. A notable example of this task arises in paired-end read mapping as a form of validation of distances between multiple alignments. While straightforward for a single genome, graph-based reference structures render the operation considerably more involved. Given the sheer number of such queries in a typical read mapping experiment, an efficient algorithm for answering distance queries is crucial. In this paper, we introduce DiVerG, a compact data structure as well as a fast and scalable algorithm, for constructing distance indexes for general sequence graphs on multi-core CPU and many-core GPU architectures. DiVerG is based on PairG [Jain et al., 2019], but overcomes the limitations of PairG by exploiting the extensive potential for improvements in terms of scalability and space efficiency. As a consequence, DiVerG can process substantially larger datasets, such as whole human genomes, which are unmanageable by PairG. DiVerG offers faster index construction time and consistently faster query time with gains proportional to the size of the underlying compact data structure. We demonstrate that our method performs favorably on multiple real datasets at various scales. DiVerG achieves superior performance over PairG; e.g. resulting to 2.5-4x speed-up in query time, 44-340x smaller index size, and 3-50x faster construction time for the genome graph of the MHC region, as a particularly variable region of the human genome. The implementation is available at: https://github.com/cartoonist/diverg
Cite as

Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall. DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 10:1-10:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{ghaffaari_et_al:LIPIcs.WABI.2025.10,
  author =	{Ghaffaari, Ali and Sch\"{o}nhuth, Alexander and Marschall, Tobias},
  title =	{{DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{10:1--10:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.10},
  URN =		{urn:nbn:de:0030-drops-239369},
  doi =		{10.4230/LIPIcs.WABI.2025.10},
  annote =	{Keywords: Sequence graph, distance index, read mapping, sparse matrix}
}
Document
DOI: 10.4230/LIPIcs.CCC.2025.7
Sparser Abelian High Dimensional Expanders

Authors: Yotam Dikstein, Siqi Liu, and Avi Wigderson

Published in: LIPIcs, Volume 339, 40th Computational Complexity Conference (CCC 2025)

Abstract
The focus of this paper is the development of new elementary techniques for the construction and analysis of high dimensional expanders. Specifically, we present two new explicit constructions of Cayley high dimensional expanders (HDXs) over the abelian group 𝔽₂ⁿ. Our expansion proofs use only linear algebra and combinatorial arguments. The first construction gives local spectral HDXs of any constant dimension and subpolynomial degree exp(n^ε) for every ε > 0, improving on a construction by Golowich [Golowich, 2023] which achieves ε = 1/2. [Golowich, 2023] derives these HDXs by sparsifying the complete Grassmann poset of subspaces. The novelty in our construction is the ability to sparsify any expanding Grassmann posets, leading to iterated sparsification and much smaller degrees. The sparse Grassmannian (which is of independent interest in the theory of HDXs) serves as the generating set of the Cayley graph. Our second construction gives a 2-dimensional HDX of any polynomial degree exp(ε n) for any constant ε > 0, which is simultaneously a spectral expander and a coboundary expander. To the best of our knowledge, this is the first such non-trivial construction. We name it the Johnson complex, as it is derived from the classical Johnson scheme, whose vertices serve as the generating set of this Cayley graph. This construction may be viewed as a derandomization of the recent random geometric complexes of [Liu et al., 2023]. Establishing coboundary expansion through Gromov’s "cone method" and the associated isoperimetric inequalities is the most intricate aspect of this construction. While these two constructions are quite different, we show that they both share a common structure, resembling the intersection patterns of vectors in the Hadamard code. We propose a general framework of such "Hadamard-like" constructions in the hope that it will yield new HDXs.
Cite as

Yotam Dikstein, Siqi Liu, and Avi Wigderson. Sparser Abelian High Dimensional Expanders. In 40th Computational Complexity Conference (CCC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 339, pp. 7:1-7:98, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{dikstein_et_al:LIPIcs.CCC.2025.7,
  author =	{Dikstein, Yotam and Liu, Siqi and Wigderson, Avi},
  title =	{{Sparser Abelian High Dimensional Expanders}},
  booktitle =	{40th Computational Complexity Conference (CCC 2025)},
  pages =	{7:1--7:98},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-379-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{339},
  editor =	{Srinivasan, Srikanth},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CCC.2025.7},
  URN =		{urn:nbn:de:0030-drops-237013},
  doi =		{10.4230/LIPIcs.CCC.2025.7},
  annote =	{Keywords: Local spectral expander, coboundary expander, Grassmannian expander}
}
Document
DOI: 10.4230/LIPIcs.SEA.2025.11
CluStRE: Streaming Graph Clustering with Multi-Stage Refinement

Authors: Adil Chhabra, Shai Dorian Peretz, and Christian Schulz

Published in: LIPIcs, Volume 338, 23rd International Symposium on Experimental Algorithms (SEA 2025)

Abstract
We present CluStRE, a novel streaming graph clustering algorithm that balances computational efficiency with high-quality clustering using multi-stage refinement. Unlike traditional in-memory clustering approaches, CluStRE processes graphs in a streaming setting, significantly reducing memory overhead while leveraging re-streaming and evolutionary heuristics to improve solution quality. Our method dynamically constructs a quotient graph, enabling modularity-based optimization while efficiently handling large-scale graphs. We introduce multiple configurations of CluStRE to provide trade-offs between speed, memory consumption, and clustering quality. Experimental evaluations demonstrate that CluStRE improves solution quality by 89.8%, operates 2.6× faster, and uses less than two-thirds of the memory required by the state-of-the-art streaming clustering algorithm on average. Moreover, our strongest mode enhances solution quality by up to 150% on average. With this, CluStRE achieves comparable solution quality to in-memory algorithms, i.e. over 96% of the quality of clustering approaches, including Louvain, effectively bridging the gap between streaming and traditional clustering methods.
Cite as

Adil Chhabra, Shai Dorian Peretz, and Christian Schulz. CluStRE: Streaming Graph Clustering with Multi-Stage Refinement. In 23rd International Symposium on Experimental Algorithms (SEA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 338, pp. 11:1-11:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{chhabra_et_al:LIPIcs.SEA.2025.11,
  author =	{Chhabra, Adil and Dorian Peretz, Shai and Schulz, Christian},
  title =	{{CluStRE: Streaming Graph Clustering with Multi-Stage Refinement}},
  booktitle =	{23rd International Symposium on Experimental Algorithms (SEA 2025)},
  pages =	{11:1--11:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-375-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{338},
  editor =	{Mutzel, Petra and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2025.11},
  URN =		{urn:nbn:de:0030-drops-232493},
  doi =		{10.4230/LIPIcs.SEA.2025.11},
  annote =	{Keywords: graph clustering, community, streaming, online, memetic, evolutionary}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.37
Satisfiability of Commutative vs. Non-Commutative CSPs

Authors: Andrei A. Bulatov and Stanislav Živný

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
The Mermin-Peres magic square is a celebrated example of a system of Boolean linear equations that is not (classically) satisfiable but is satisfiable via linear operators on a Hilbert space of dimension four. A natural question is then, for what kind of problems such a phenomenon occurs? Atserias, Kolaitis, and Severini answered this question for all Boolean Constraint Satisfaction Problems (CSPs): For 0-Valid-SAT, 1-Valid-SAT, 2-SAT, Horn-SAT, and Dual Horn-SAT, classical satisfiability and operator satisfiability is the same and thus there is no gap; for all other Boolean CSPs, these notions differ as there are gaps, i.e., there are unsatisfiable instances that are satisfiable via operators on Hilbert spaces. We generalize their result to CSPs on arbitrary finite domains and give an almost complete classification: First, we show that NP-hard CSPs admit a separation between classical satisfiability and satisfiability via operators on finite- and infinite-dimensional Hilbert spaces. Second, we show that tractable CSPs of bounded width have no satisfiability gaps of any kind. Finally, we show that tractable CSPs of unbounded width can simulate, in a satisfiability-gap-preserving fashion, linear equations over an Abelian group of prime order p; for such CSPs, we obtain a separation of classical satisfiability and satisfiability via operators on infinite-dimensional Hilbert spaces. Furthermore, if p = 2, such CSPs also have gaps separating classical satisfiability and satisfiability via operators on finite- and infinite-dimensional Hilbert spaces.
Cite as

Andrei A. Bulatov and Stanislav Živný. Satisfiability of Commutative vs. Non-Commutative CSPs. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 37:1-37:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{bulatov_et_al:LIPIcs.ICALP.2025.37,
  author =	{Bulatov, Andrei A. and \v{Z}ivn\'{y}, Stanislav},
  title =	{{Satisfiability of Commutative vs. Non-Commutative CSPs}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{37:1--37:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.37},
  URN =		{urn:nbn:de:0030-drops-234149},
  doi =		{10.4230/LIPIcs.ICALP.2025.37},
  annote =	{Keywords: constraint satisfaction, quantum CSP, operator CSP}
}
  • Refine by Type
  • 28 Document/PDF
  • 21 Document/HTML

  • Refine by Publication Year
  • 18 2025
  • 3 2023
  • 1 2021
  • 1 2020
  • 2 2019
  • Show More...

  • Refine by Author
  • 2 Defrain, Oscar
  • 1 Adsul, Bharat
  • 1 Auger, David
  • 1 Austin, Pete
  • 1 Biswas, Russa
  • Show More...

  • Refine by Series/Journal
  • 21 LIPIcs
  • 3 OASIcs
  • 1 LITES
  • 3 TGDK

  • Refine by Classification
  • 3 Theory of computation → Constraint and logic programming
  • 2 Mathematics of computing → Enumeration
  • 2 Theory of computation
  • 2 Theory of computation → Algorithmic game theory
  • 2 Theory of computation → Formal languages and automata theory
  • Show More...

  • Refine by Keyword
  • 2 Large Language Models
  • 1 Algorithmic enumeration
  • 1 Bipartite graphs
  • 1 Bland’s rule
  • 1 Boolean classification
  • Show More...

Any Issues?
X

Feedback on the Current Page

CAPTCHA

Thanks for your feedback!

Feedback submitted to Dagstuhl Publishing

Could not send message

Please try again later or send an E-mail
© 2023-2026 Schloss Dagstuhl – LZI GmbH Schloss Dagstuhl – LZI GmbH About DROPS Imprint Privacy Contact