16 Search Results for "Jung, Klaus"

Document
DOI: 10.4230/LIPIcs.STACS.2026.42
Computing Twin-Width via Treedepth and Vertex Integrity

Authors: Robert Ganian and Mathis Rocton

Published in: LIPIcs, Volume 364, 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)

Abstract
Twin-width is a graph parameter that has become central to explaining the fixed-parameter tractability of first-order model checking across many graph classes. Despite its algorithmic importance, computing twin-width remains poorly understood: even recognizing graphs of twin-width at most four is NP-hard, and no fixed-parameter approximations parameterized by twin-width itself are known. A recent approach towards breaking this barrier focuses on first developing fixed-parameter algorithms for computing or approximating twin-width under parameterizations distinct from twin-width. Our first result establishes that approximating twin-width is fixed-parameter tractable when parameterized by treedepth, thereby breaking the long-standing barrier that all previous tractable parameterizations were based on deletion distance. The proof proceeds via oriented twin-width, yielding the first constructive evidence that this variant may be easier to handle algorithmically. As our second main result, we show that computing twin-width exactly is fixed-parameter tractable with respect to vertex integrity. This constitutes the first non-trivial parameterized algorithm for computing optimal contraction sequences.
Cite as

Robert Ganian and Mathis Rocton. Computing Twin-Width via Treedepth and Vertex Integrity. In 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 364, pp. 42:1-42:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{ganian_et_al:LIPIcs.STACS.2026.42,
  author =	{Ganian, Robert and Rocton, Mathis},
  title =	{{Computing Twin-Width via Treedepth and Vertex Integrity}},
  booktitle =	{43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)},
  pages =	{42:1--42:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-412-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{364},
  editor =	{Mahajan, Meena and Manea, Florin and McIver, Annabelle and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2026.42},
  URN =		{urn:nbn:de:0030-drops-255318},
  doi =		{10.4230/LIPIcs.STACS.2026.42},
  annote =	{Keywords: twin-width, fixed-parameter algorithms, treedepth, vertex integrity}
}
Document
DOI: 10.4230/LIPIcs.CSL.2026.41
Weakly-Sparse and Strongly Flip-Flat Classes of Graphs Are Uniformly Almost-Wide

Authors: Fatemeh Ghasemi, Julien Grange, Mamadou Moustapha Kanté, and Florent Madelaine

Published in: LIPIcs, Volume 363, 34th EACSL Annual Conference on Computer Science Logic (CSL 2026)

Abstract
In this work we take a step towards characterising strongly flip-flat classes of graphs. Strong flip-flatness appears to be the analogue of uniform almost-wideness in the setting of dense classes of graphs. We prove that strongly flip-flat classes of graphs that are weakly sparse are indeed uniformly almost-wide.
Cite as

Fatemeh Ghasemi, Julien Grange, Mamadou Moustapha Kanté, and Florent Madelaine. Weakly-Sparse and Strongly Flip-Flat Classes of Graphs Are Uniformly Almost-Wide. In 34th EACSL Annual Conference on Computer Science Logic (CSL 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 363, pp. 41:1-41:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{ghasemi_et_al:LIPIcs.CSL.2026.41,
  author =	{Ghasemi, Fatemeh and Grange, Julien and Kant\'{e}, Mamadou Moustapha and Madelaine, Florent},
  title =	{{Weakly-Sparse and Strongly Flip-Flat Classes of Graphs Are Uniformly Almost-Wide}},
  booktitle =	{34th EACSL Annual Conference on Computer Science Logic (CSL 2026)},
  pages =	{41:1--41:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-411-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{363},
  editor =	{Guerrini, Stefano and K\"{o}nig, Barbara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2026.41},
  URN =		{urn:nbn:de:0030-drops-254668},
  doi =		{10.4230/LIPIcs.CSL.2026.41},
  annote =	{Keywords: Almost-wide, Flip-flatness}
}
Document
DOI: 10.4230/LIPIcs.IPEC.2025.17
Treedepth Inapproximability and Exponential ETH Lower Bound

Authors: Édouard Bonnet, Daniel Neuen, and Marek Sokołowski

Published in: LIPIcs, Volume 358, 20th International Symposium on Parameterized and Exact Computation (IPEC 2025)

Abstract
Treedepth is a central parameter to algorithmic graph theory. The current state-of-the-art in computing and approximating treedepth consists of a 2^{O(k²)} n-time exact algorithm and a polynomial-time O(OPT log^{3/2} OPT)-approximation algorithm, where the former algorithm returns an elimination forest of height k (witnessing that treedepth is at most k) for the n-vertex input graph G, or correctly reports that G has treedepth larger than k, and OPT is the actual value of the treedepth. On the complexity side, exactly computing treedepth is NP-complete, but the known reductions do not rule out a polynomial-time approximation scheme (PTAS), and under the Exponential Time Hypothesis (ETH) only exclude a running time of 2^o(√n) for exact algorithms. We show that 1.0003-approximating Treedepth is NP-hard, and that exactly computing the treedepth of an n-vertex graph requires time 2^Ω(n), unless the ETH fails. We further derive that there exist absolute constants δ, c > 0 such that any (1+δ)-approximation algorithm requires time 2^Ω(n/log^c n). We do so via a simple direct reduction from Satisfiability to Treedepth, inspired by a reduction recently designed for Treewidth [STOC '25].
Cite as

Édouard Bonnet, Daniel Neuen, and Marek Sokołowski. Treedepth Inapproximability and Exponential ETH Lower Bound. In 20th International Symposium on Parameterized and Exact Computation (IPEC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 358, pp. 17:1-17:10, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bonnet_et_al:LIPIcs.IPEC.2025.17,
  author =	{Bonnet, \'{E}douard and Neuen, Daniel and Soko{\l}owski, Marek},
  title =	{{Treedepth Inapproximability and Exponential ETH Lower Bound}},
  booktitle =	{20th International Symposium on Parameterized and Exact Computation (IPEC 2025)},
  pages =	{17:1--17:10},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-407-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{358},
  editor =	{Agrawal, Akanksha and van Leeuwen, Erik Jan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2025.17},
  URN =		{urn:nbn:de:0030-drops-251494},
  doi =		{10.4230/LIPIcs.IPEC.2025.17},
  annote =	{Keywords: treedepth, lower bounds, approximation}
}
Document
DOI: 10.4230/OASIcs.ATMOS.2025.15
Exact and Heuristic Dynamic Taxi Sharing with Transfers Using Shortest-Path Speedup Techniques

Authors: Johannes Breitling and Moritz Laupichler

Published in: OASIcs, Volume 137, 25th Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2025)

Abstract
We introduce a first-of-its-kind efficient, exact algorithm for the dynamic taxi-sharing problem with single-transfer journeys, i.e., a dispatcher that assigns traveler requests to a fleet of shared taxi-like vehicles allowing transfers between vehicles. We extend an existing no-transfer solution by collecting all viable pickup and dropoff vehicles for a request and computing the optimal transfer point for every pair of vehicles. We analyze underlying shortest-path problems and employ state-of-the-art routing algorithms to compute distances on-the-fly, which serves as the basis of dispatching requests with exact and up-to-date travel time information. We utilize constraints on existing routes, pruning techniques for transfer points, and both instruction- and thread-level parallelism to speed up the computation of the best assignment for every traveler. In addition to the exact variant, we propose a tunable heuristic approach that sacrifices solution quality in favor of improved running time. We evaluate our algorithm on a large road network with realistic input sets (up to 150000 requests). We demonstrate the effectiveness of our speedup techniques and the heuristic. We show first results on the benefits of transfers for taxi sharing on dense request sets, proving that our algorithm is well suited for the analysis of taxi sharing with transfers on large input instances.
Cite as

Johannes Breitling and Moritz Laupichler. Exact and Heuristic Dynamic Taxi Sharing with Transfers Using Shortest-Path Speedup Techniques. In 25th Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2025). Open Access Series in Informatics (OASIcs), Volume 137, pp. 15:1-15:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{breitling_et_al:OASIcs.ATMOS.2025.15,
  author =	{Breitling, Johannes and Laupichler, Moritz},
  title =	{{Exact and Heuristic Dynamic Taxi Sharing with Transfers Using Shortest-Path Speedup Techniques}},
  booktitle =	{25th Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2025)},
  pages =	{15:1--15:22},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-404-8},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{137},
  editor =	{Sauer, Jonas and Schmidt, Marie},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.ATMOS.2025.15},
  URN =		{urn:nbn:de:0030-drops-247718},
  doi =		{10.4230/OASIcs.ATMOS.2025.15},
  annote =	{Keywords: Dynamic taxi sharing, ride pooling, dial-a-ride problem, transfers, route planning}
}
Document
DOI: 10.4230/LIPIcs.AFT.2025.1
Cache Timing Leakages in Zero-Knowledge Protocols

Authors: Shibam Mukherjee, Christian Rechberger, and Markus Schofnegger

Published in: LIPIcs, Volume 354, 7th Conference on Advances in Financial Technologies (AFT 2025)

Abstract
The area of modern zero-knowledge proof systems has seen a significant rise in popularity over the last couple of years, with new techniques and optimized constructions emerging on a regular basis. As the field matures, the aspect of implementation attacks becomes more relevant, however side-channel attacks on zero-knowledge proof systems have seen surprisingly little treatment so far. In this paper, we give an overview of potential attack vectors and show that some of the underlying finite field libraries, and implementations of heavily used components like hash functions using them, are vulnerable w.r.t. cache attacks on CPUs. On the positive side, we demonstrate that the computational overhead to protect against these attacks is relatively small.
Cite as

Shibam Mukherjee, Christian Rechberger, and Markus Schofnegger. Cache Timing Leakages in Zero-Knowledge Protocols. In 7th Conference on Advances in Financial Technologies (AFT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 354, pp. 1:1-1:26, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{mukherjee_et_al:LIPIcs.AFT.2025.1,
  author =	{Mukherjee, Shibam and Rechberger, Christian and Schofnegger, Markus},
  title =	{{Cache Timing Leakages in Zero-Knowledge Protocols}},
  booktitle =	{7th Conference on Advances in Financial Technologies (AFT 2025)},
  pages =	{1:1--1:26},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-400-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{354},
  editor =	{Avarikioti, Zeta and Christin, Nicolas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AFT.2025.1},
  URN =		{urn:nbn:de:0030-drops-247201},
  doi =		{10.4230/LIPIcs.AFT.2025.1},
  annote =	{Keywords: zero-knowledge, protocol, cache timing, side-channel, leakage}
}
Document
APPROX
DOI: 10.4230/LIPIcs.APPROX/RANDOM.2025.20
Approximating Maximum Cut on Interval Graphs and Split Graphs Beyond Goemans-Williamson

Authors: Jungho Ahn, Ian DeHaan, Eun Jung Kim, and Euiwoong Lee

Published in: LIPIcs, Volume 353, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)

Abstract
We present a polynomial-time (α_{GW} + ε)-approximation algorithm for the Maximum Cut problem on interval graphs and split graphs, where α_{GW} ≈ 0.878 is the approximation guarantee of the Goemans-Williamson algorithm and ε > 10^{-34} is a fixed constant. To attain this, we give an improved analysis of a slight modification of the Goemans-Williamson algorithm for graphs in which triangles can be packed into a constant fraction of their edges. We then pair this analysis with structural results showing that both interval graphs and split graphs either have such a triangle packing or have maximum cut close to their number of edges. We also show that, subject to the Small Set Expansion Hypothesis, there exists a constant c > 0 such that there is no polyomial-time (1 - c)-approximation for Maximum Cut on split graphs.
Cite as

Jungho Ahn, Ian DeHaan, Eun Jung Kim, and Euiwoong Lee. Approximating Maximum Cut on Interval Graphs and Split Graphs Beyond Goemans-Williamson. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 353, pp. 20:1-20:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ahn_et_al:LIPIcs.APPROX/RANDOM.2025.20,
  author =	{Ahn, Jungho and DeHaan, Ian and Kim, Eun Jung and Lee, Euiwoong},
  title =	{{Approximating Maximum Cut on Interval Graphs and Split Graphs Beyond Goemans-Williamson}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)},
  pages =	{20:1--20:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-397-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{353},
  editor =	{Ene, Alina and Chattopadhyay, Eshan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2025.20},
  URN =		{urn:nbn:de:0030-drops-243869},
  doi =		{10.4230/LIPIcs.APPROX/RANDOM.2025.20},
  annote =	{Keywords: Maximum cut, graph theory, interval graphs, split graphs}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.13
Solving Partial Dominating Set and Related Problems Using Twin-Width

Authors: Jakub Balabán, Daniel Mock, and Peter Rossmanith

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
Partial vertex cover and partial dominating set are two well-investigated optimization problems. While they are W[1]-hard on general graphs, they have been shown to be fixed-parameter tractable on many sparse graph classes, including nowhere-dense classes. In this paper, we demonstrate that these problems are also fixed-parameter tractable with respect to the twin-width of a graph. Indeed, we establish a more general result: every graph property that can be expressed by a logical formula of the form ϕ≡∃ x₁⋯ ∃ x_k ∑_{α ∈ I} #y ψ_α(x₁,…,x_k,y) ≥ t, where ψ_α is a quantifier-free formula for each α ∈ I, t is an arbitrary number, and #y is a counting quantifier, can be evaluated in time f(d,k)n, where n is the number of vertices and d is the width of a contraction sequence that is part of the input. In addition to the aforementioned problems, this includes also connected partial dominating set and independent partial dominating set.
Cite as

Jakub Balabán, Daniel Mock, and Peter Rossmanith. Solving Partial Dominating Set and Related Problems Using Twin-Width. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 13:1-13:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{balaban_et_al:LIPIcs.MFCS.2025.13,
  author =	{Balab\'{a}n, Jakub and Mock, Daniel and Rossmanith, Peter},
  title =	{{Solving Partial Dominating Set and Related Problems Using Twin-Width}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{13:1--13:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.13},
  URN =		{urn:nbn:de:0030-drops-241203},
  doi =		{10.4230/LIPIcs.MFCS.2025.13},
  annote =	{Keywords: Partial Dominating Set, Partial Vertex Cover, meta-algorithm, counting logic, twin-width}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.74
Subcoloring of (Unit) Disk Graphs

Authors: Malory Marin and Rémi Watrigant

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
A subcoloring of a graph is a partition of its vertex set into subsets (called colors), each inducing a disjoint union of cliques. It is a natural generalization of the classical proper coloring, in which each color must instead induce an independent set. Similarly to proper coloring, we define the subchromatic number of a graph as the minimum integer k such that it admits a subcoloring with k colors, and the corresponding problem k-Subcoloring which asks whether a graph has subchromatic number at most k. In this paper, we initiate the study of the subcoloring of (unit) disk graphs. One motivation stems from the fact that disk graphs can be seen as a dense generalization of planar graphs where, intuitively, each vertex can be blown into a large clique-much like subcoloring generalizes proper coloring. Interestingly, it can be observed that every unit disk graph admits a subcoloring with at most 7 colors. We first prove that the subchromatic number can be 3-approximated in polynomial-time in unit disk graphs. We then present several hardness results for special cases of unit disk graphs which somehow prevents the use of classical approaches for improving this result. We show in particular that 2-Subcoloring remains NP-hard in triangle-free unit disk graphs, as well as in unit disk graphs representable within a strip of bounded height. We also solve an open question of Broersma, Fomin, Nešetřil, and Woeginger (2002) by proving that 3-Subcoloring remains NP-hard in co-comparability graphs (which contain unit disk graphs representable within a strip of height √3/2). Finally, we prove that every n-vertex disk graph admits a subcoloring with at most O(log³(n)) colors and present a O(log²(n))-approximation algorithm for computing the subchromatic number of such graphs. This is achieved by defining a decomposition and a special type of co-comparability disk graph, called Δ-disk graphs, which might be of independent interest.
Cite as

Malory Marin and Rémi Watrigant. Subcoloring of (Unit) Disk Graphs. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 74:1-74:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{marin_et_al:LIPIcs.MFCS.2025.74,
  author =	{Marin, Malory and Watrigant, R\'{e}mi},
  title =	{{Subcoloring of (Unit) Disk Graphs}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{74:1--74:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.74},
  URN =		{urn:nbn:de:0030-drops-241811},
  doi =		{10.4230/LIPIcs.MFCS.2025.74},
  annote =	{Keywords: subcoloring, algorithms, disk graphs, unit disk graphs}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.12
Extension of Partial Atom-To-Atom Maps: Uniqueness and Algorithms

Authors: Marcos E. González Laffitte, Tieu-Long Phan, and Peter F. Stadler

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Chemical reaction databases typically report the molecular structures of reactant and product compounds, as well as their stoichiometry, but lack information, in particular, on the correspondence of reactant and product atoms. These atom-to-atom maps (AAM), however, are crucial for applications including chemical synthesis planning in organic chemistry and the analysis of isotope labeling experiments in modern metabolomics. AAMs therefore need to be reconstructed computationally. This situation is aggravated, furthermore, by the fact that chemically correct AAMs are, fundamentally, determined by quantum-mechanical phenomena and thus cannot be reliably computed by solving graph-theoretical optimization problems defined by the reactant and product structures. A viable solution for this problem is to shift the focus into first identifying a partial AAM containing the reaction center, i.e., covering the atoms incident with all bonds that change during a reaction. This then leads to the problem of extending the partial map to the full reaction. The AAM of a reaction is faithfully represented by the Imaginary Transition State (ITS) graph, providing a convenient graph-theoretic framework to address the questions of when and how a partial AAM can be extended. We show that an unique extension exists whenever, and only if, these partial AAMs cover the reaction center. In this case their extension can be computed by solving a constrained graph-isomorphism search between specific subgraphs of ITS graphs. We close by benchmarking different tools for this task.
Cite as

Marcos E. González Laffitte, Tieu-Long Phan, and Peter F. Stadler. Extension of Partial Atom-To-Atom Maps: Uniqueness and Algorithms. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 12:1-12:26, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gonzalezlaffitte_et_al:LIPIcs.WABI.2025.12,
  author =	{Gonz\'{a}lez Laffitte, Marcos E. and Phan, Tieu-Long and Stadler, Peter F.},
  title =	{{Extension of Partial Atom-To-Atom Maps: Uniqueness and Algorithms}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{12:1--12:26},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.12},
  URN =		{urn:nbn:de:0030-drops-239410},
  doi =		{10.4230/LIPIcs.WABI.2025.12},
  annote =	{Keywords: atom-to-atom maps, imaginary transition state (ITS) graphs, condensed graph of the reaction (CGR), chemical reaction mechanisms, molecular graphs, metabolic networks, chemical synthesis planning, constrained graph isomorphism}
}
Document
Track B: Automata, Logic, Semantics, and Theory of Programming
DOI: 10.4230/LIPIcs.ICALP.2025.167
Forbidden Induced Subgraphs for Bounded Shrub-Depth and the Expressive Power of MSO

Authors: Nikolas Mählmann

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
The graph parameter shrub-depth is a dense analog of tree-depth. We characterize classes of bounded shrub-depth by forbidden induced subgraphs. The obstructions are well-controlled flips of large half-graphs and of disjoint unions of many long paths. Applying this characterization, we show that on every hereditary class of unbounded shrub-depth, MSO is more expressive than FO. This confirms a conjecture of [Gajarský and Hliněný; LMCS 2015] who proved that on classes of bounded shrub-depth FO and MSO have the same expressive power. Combined, the two results fully characterize the hereditary classes on which FO and MSO coincide, answering an open question by [Elberfeld, Grohe, and Tantau; LICS 2012]. Our work is inspired by the notion of stability from model theory. A graph class 𝒞 is MSO-stable, if no MSO-formula can define arbitrarily long linear orders in graphs from 𝒞. We show that a hereditary graph class is MSO-stable if and only if it has bounded shrub-depth. As a key ingredient, we prove that every hereditary class of unbounded shrub-depth FO-interprets the class of all paths. This improves upon a result of [Ossona de Mendez, Pilipczuk, and Siebertz; Eur. J. Comb. 2025] who showed the same statement for FO-transductions instead of FO-interpretations.
Cite as

Nikolas Mählmann. Forbidden Induced Subgraphs for Bounded Shrub-Depth and the Expressive Power of MSO. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 167:1-167:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{mahlmann:LIPIcs.ICALP.2025.167,
  author =	{M\"{a}hlmann, Nikolas},
  title =	{{Forbidden Induced Subgraphs for Bounded Shrub-Depth and the Expressive Power of MSO}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{167:1--167:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.167},
  URN =		{urn:nbn:de:0030-drops-235444},
  doi =		{10.4230/LIPIcs.ICALP.2025.167},
  annote =	{Keywords: Shrub-Depth, Forbidden Induced Subgraphs, MSO, Stability Theory}
}
Document
Pearl/Brave New Idea
DOI: 10.4230/LIPIcs.ECOOP.2025.42
Contract Systems Need Domain-Specific Notations (Pearl/Brave New Idea)

Authors: Cameron Moy, Ryan Jung, and Matthias Felleisen

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Contract systems enable programmers to state specifications and have them enforced at run time. First-order contracts are expressed using ordinary code, while higher-order contracts are expressed using the notation familiar from type systems. Most interface descriptions, though, come with properties that involve not just assertions about single method calls, but entire call chains. Typical contract systems cannot express these specifications concisely. Such specifications demand domain-specific notations. In response, this paper proposes that contract systems abstract over the notation used for stating specifications. It presents an architecture for such a system, some illustrative examples, and an evaluation in terms of common notations from the literature.
Cite as

Cameron Moy, Ryan Jung, and Matthias Felleisen. Contract Systems Need Domain-Specific Notations (Pearl/Brave New Idea). In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 42:1-42:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{moy_et_al:LIPIcs.ECOOP.2025.42,
  author =	{Moy, Cameron and Jung, Ryan and Felleisen, Matthias},
  title =	{{Contract Systems Need Domain-Specific Notations}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{42:1--42:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.42},
  URN =		{urn:nbn:de:0030-drops-233348},
  doi =		{10.4230/LIPIcs.ECOOP.2025.42},
  annote =	{Keywords: software contracts, domain-specific languages}
}
Document
DOI: 10.4230/LIPIcs.SoCG.2025.63
The Maximum Clique Problem in a Disk Graph Made Easy

Authors: J. Mark Keil and Debajyoti Mondal

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract
A disk graph is an intersection graph of disks in ℝ². Determining the computational complexity of finding a maximum clique in a disk graph is a long-standing open problem. In 1990, Clark, Colbourn, and Johnson gave a polynomial-time algorithm for computing a maximum clique in a unit disk graph. However, finding a maximum clique when disks are of arbitrary size is widely believed to be a challenging open problem. In this paper, we provide a new perspective to examine adjacencies in a disk graph that helps obtain the following results. - We design an 𝒪^*(n^{2k})-time algorithm, where 𝒪^* hides a polynomial factor, to find a maximum clique in a n-vertex disk graph with k different sizes of radii. This is polynomial for every fixed k, and thus settles the open question for the case when k = 2. - Given a set of n unit disks, we show how to compute a maximum clique inside each possible axis-aligned rectangle determined by the disk centers in O(n⁵log n)-time. This is at least a factor of n^{4/3} faster than applying the fastest known algorithm for finding a maximum clique in a unit disk graph for each rectangle independently. - We give an 𝒪^*(n^{2rk})-time algorithm to find a maximum clique in a n-vertex ball graph with k different sizes of radii where the ball centers lie on r parallel planes. This is polynomial for every fixed k and r, and thus contrasts the previously known NP-hardness result for finding a maximum clique in an arbitrary ball graph. - We design an 𝒪^*(n^{2k})-time algorithm to find a maximum clique in the intersection graph of a set S of n L-visible convex polygons, where k is the number of distinct shapes in S. This contrasts the known hardness result on finding a maximum clique in the intersection graph of unit disks and axis-aligned rectangles.
Cite as

J. Mark Keil and Debajyoti Mondal. The Maximum Clique Problem in a Disk Graph Made Easy. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 63:1-63:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{keil_et_al:LIPIcs.SoCG.2025.63,
  author =	{Keil, J. Mark and Mondal, Debajyoti},
  title =	{{The Maximum Clique Problem in a Disk Graph Made Easy}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{63:1--63:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.63},
  URN =		{urn:nbn:de:0030-drops-232155},
  doi =		{10.4230/LIPIcs.SoCG.2025.63},
  annote =	{Keywords: Geometric Intersection Graphs, Disk Graphs, Ball Graphs, Maximum Clique}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.19
The Complexity of Learning LTL, CTL and ATL Formulas

Authors: Benjamin Bordais, Daniel Neider, and Rajarshi Roy

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
We consider the problem of learning temporal logic formulas from examples of system behavior. Learning temporal properties has crystallized as an effective means to explain complex temporal behaviors. Several efficient algorithms have been designed for learning temporal formulas. However, the theoretical understanding of the complexity of the learning decision problems remains largely unexplored. To address this, we study the complexity of the passive learning problems of three prominent temporal logics, Linear Temporal Logic (LTL), Computation Tree Logic (CTL) and Alternating-time Temporal Logic (ATL) and several of their fragments. We show that learning formulas with unbounded occurrences of binary operators is NP-complete for all of these logics. On the other hand, when investigating the complexity of learning formulas with bounded occurrences of binary operators, we exhibit discrepancies between the complexity of learning LTL, CTL and ATL formulas (with a varying number of agents).
Cite as

Benjamin Bordais, Daniel Neider, and Rajarshi Roy. The Complexity of Learning LTL, CTL and ATL Formulas. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 19:1-19:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bordais_et_al:LIPIcs.STACS.2025.19,
  author =	{Bordais, Benjamin and Neider, Daniel and Roy, Rajarshi},
  title =	{{The Complexity of Learning LTL, CTL and ATL Formulas}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{19:1--19:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.19},
  URN =		{urn:nbn:de:0030-drops-228441},
  doi =		{10.4230/LIPIcs.STACS.2025.19},
  annote =	{Keywords: Temporal logic, passive learning, complexity}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.36
MaxMin Separation Problems: FPT Algorithms for st-Separator and Odd Cycle Transversal

Authors: Ajinkya Gaikwad, Hitendra Kumar, Soumen Maity, Saket Saurabh, and Roohani Sharma

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
In this paper, we study the parameterized complexity of the MaxMin versions of two fundamental separation problems: Maximum Minimal st-Separator and Maximum Minimal Odd Cycle Transversal (OCT), both parameterized by the solution size. In the Maximum Minimal st-Separator problem, given a graph G, two distinct vertices s and t and a positive integer k, the goal is to determine whether there exists a minimal st-separator in G of size at least k. Similarly, the Maximum Minimal OCT problem seeks to determine if there exists a minimal set of vertices whose deletion results in a bipartite graph, and whose size is at least k. We demonstrate that both problems are fixed-parameter tractable parameterized by k. Our FPT algorithm for Maximum Minimal st-Separator answers the open question by Hanaka, Bodlaender, van der Zanden & Ono [TCS 2019]. One unique insight from this work is the following. We use the meta-result of Lokshtanov, Ramanujan, Saurabh & Zehavi [ICALP 2018] that enables us to reduce our problems to highly unbreakable graphs. This is interesting, as an explicit use of the recursive understanding and randomized contractions framework of Chitnis, Cygan, Hajiaghayi, Pilipczuk & Pilipczuk [SICOMP 2016] to reduce to the highly unbreakable graphs setting (which is the result that Lokshtanov et al. tries to abstract out in their meta-theorem) does not seem obvious because certain "extension" variants of our problems are W[1]-hard.
Cite as

Ajinkya Gaikwad, Hitendra Kumar, Soumen Maity, Saket Saurabh, and Roohani Sharma. MaxMin Separation Problems: FPT Algorithms for st-Separator and Odd Cycle Transversal. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 36:1-36:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gaikwad_et_al:LIPIcs.STACS.2025.36,
  author =	{Gaikwad, Ajinkya and Kumar, Hitendra and Maity, Soumen and Saurabh, Saket and Sharma, Roohani},
  title =	{{MaxMin Separation Problems: FPT Algorithms for st-Separator and Odd Cycle Transversal}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{36:1--36:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.36},
  URN =		{urn:nbn:de:0030-drops-228622},
  doi =		{10.4230/LIPIcs.STACS.2025.36},
  annote =	{Keywords: Parameterized Complexity, FPT, MaxMin problems, Maximum Minimal st-separator, Maximum Minimal Odd Cycle Transversal, Unbreakable Graphs, CMSO, Long Induced Odd Cycles, Sunflower Lemma}
}
Document
Resource Paper
DOI: 10.4230/TGDK.2.2.5
The Reasonable Ontology Templates Framework

Authors: Martin Georg Skjæveland and Leif Harald Karlsen

Published in: TGDK, Volume 2, Issue 2 (2024): Special Issue on Resources for Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 2, Issue 2

Abstract
Reasonable Ontology Templates (OTTR) is a templating language for representing and instantiating patterns. It is based on simple and generic, but powerful, mechanisms such as recursive macro expansion, term substitution and type systems, and is designed particularly for building and maintaining RDF knowledge graphs and OWL ontologies. In this resource paper, we present the formal specifications that define the OTTR framework. This includes the fundamentals of the OTTR language and the adaptions to make it fit with standard semantic web languages, and two serialization formats developed for semantic web practitioners. We also present the OTTR framework’s support for documenting, publishing and managing template libraries, and for tools for practical bulk instantiation of templates from tabular data and queryable data sources. The functionality of the OTTR framework is available for use through Lutra, an open-source reference implementation, and other independent implementations. We report on the use and impact of OTTR by presenting selected industrial use cases. Finally, we reflect on some design considerations of the language and framework and present ideas for future work.
Cite as

Martin Georg Skjæveland and Leif Harald Karlsen. The Reasonable Ontology Templates Framework. In Special Issue on Resources for Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 2, Issue 2, pp. 5:1-5:54, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@Article{skjaeveland_et_al:TGDK.2.2.5,
  author =	{Skj{\ae}veland, Martin Georg and Karlsen, Leif Harald},
  title =	{{The Reasonable Ontology Templates Framework}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{5:1--5:54},
  ISSN =	{2942-7517},
  year =	{2024},
  volume =	{2},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.2.2.5},
  URN =		{urn:nbn:de:0030-drops-225896},
  doi =		{10.4230/TGDK.2.2.5},
  annote =	{Keywords: Ontology engineering, Ontology design patterns, Template mechanism, Macros}
}
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