28 Search Results for "Meyer, Ulrich"

Document
DOI: 10.4230/LIPIcs.SEA.2026.5
BuffCut: Prioritized Buffered Streaming Graph Partitioning

Authors: Linus Baumgärtner, Adil Chhabra, Marcelo Fonseca Faraj, and Christian Schulz

Published in: LIPIcs, Volume 371, 24th International Symposium on Experimental Algorithms (SEA 2026)

Abstract
Streaming graph partitioners enable resource-efficient and massively scalable partitioning, but one-pass assignment heuristics are highly sensitive to stream order and often yield substantially higher edge cuts than in-memory methods. We present BuffCut, a buffered streaming partitioner that narrows this quality gap, particularly when stream ordering is adversarial, by combining prioritized buffering with batch-wise multilevel assignment. BuffCut maintains a bounded priority buffer to delay poorly informed decisions and regulate the order in which nodes are considered for assignment. It incrementally constructs high-locality batches of configurable size by iteratively inserting the highest-priority nodes from the buffer into the batch, effectively recovering locality structure from the stream. Each batch is then assigned via a multilevel partitioning algorithm. Experiments on diverse real-world and synthetic graphs show that BuffCut consistently outperforms state-of-the-art buffered streaming methods. Compared to the strongest prioritized buffering baseline, BuffCut achieves 20.8% fewer edge cuts while running 2.9× faster and using 11.3× less memory. Against the next-best batched method, it reduces edge cut by 15.8% with only modest overheads of 1.8× runtime and 1.09× memory.
Cite as

Linus Baumgärtner, Adil Chhabra, Marcelo Fonseca Faraj, and Christian Schulz. BuffCut: Prioritized Buffered Streaming Graph Partitioning. In 24th International Symposium on Experimental Algorithms (SEA 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 371, pp. 5:1-5:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{baumgartner_et_al:LIPIcs.SEA.2026.5,
  author =	{Baumg\"{a}rtner, Linus and Chhabra, Adil and Faraj, Marcelo Fonseca and Schulz, Christian},
  title =	{{BuffCut: Prioritized Buffered Streaming Graph Partitioning}},
  booktitle =	{24th International Symposium on Experimental Algorithms (SEA 2026)},
  pages =	{5:1--5:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-422-2},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{371},
  editor =	{Aum\"{u}ller, Martin and Finocchi, Irene},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2026.5},
  URN =		{urn:nbn:de:0030-drops-260097},
  doi =		{10.4230/LIPIcs.SEA.2026.5},
  annote =	{Keywords: graph partitioning, streaming, online, buffered, prioritized partitioning}
}
Document
DOI: 10.4230/LIPIcs.SEA.2026.2
Different Scales of Randomness: Empirical Mixing Times of the Edge Switching and Curveball MCMC

Authors: Deepak Ajwani, Melvin Kallmayer, Alexander Leonhardt, Ulrich Meyer, Ryan O'Connor, and Manuel Penschuck

Published in: LIPIcs, Volume 371, 24th International Symposium on Experimental Algorithms (SEA 2026)

Abstract
The Fixed Degree Sequence Model (FDSM) asks for a uniform sample from the set of all simple graphs that match a prescribed degree sequence. It is typically implemented using Markov-Chain Monte-Carlo (MCMC) processes, such as Edge Switching or Curveball (and their variants). Yet despite decades of research, rigorous bounds on the mixing times of such processes remain impractical. Consequently, several experimental techniques have been used to derive "empirical lower bounds" on the mixing time. We address the following research questions: (1) Which commonly studied graph-theoretic properties serve as reliable empirical predictors for mixing of FDSM MCMC processes? (2) At what structural scales do these properties operate primarily (i. e., are they predominantly local or global in nature)? (3) How can these properties be characterised and quantified most effectively? To this end, we propose Claim, a novel systematic method to establish empirical lower bounds using learnt classifiers, and compare it to existing methods. Apart from interesting insights into the usage of machine learning for this problem, we also derive robust graph properties with respect to different randomisation algorithms. Although experimental in nature, these results may influence both theorist’s and algorithm engineer’s work on improved bounds and better algorithm respectively.
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Deepak Ajwani, Melvin Kallmayer, Alexander Leonhardt, Ulrich Meyer, Ryan O'Connor, and Manuel Penschuck. Different Scales of Randomness: Empirical Mixing Times of the Edge Switching and Curveball MCMC. In 24th International Symposium on Experimental Algorithms (SEA 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 371, pp. 2:1-2:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{ajwani_et_al:LIPIcs.SEA.2026.2,
  author =	{Ajwani, Deepak and Kallmayer, Melvin and Leonhardt, Alexander and Meyer, Ulrich and O'Connor, Ryan and Penschuck, Manuel},
  title =	{{Different Scales of Randomness: Empirical Mixing Times of the Edge Switching and Curveball MCMC}},
  booktitle =	{24th International Symposium on Experimental Algorithms (SEA 2026)},
  pages =	{2:1--2:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-422-2},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{371},
  editor =	{Aum\"{u}ller, Martin and Finocchi, Irene},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2026.2},
  URN =		{urn:nbn:de:0030-drops-260062},
  doi =		{10.4230/LIPIcs.SEA.2026.2},
  annote =	{Keywords: Mixing Time, Graph Randomization, Machine Learning, Edge Switching}
}
Document
DOI: 10.4230/LIPIcs.SWAT.2026.2
On the Fragile Complexity of Geometric Algorithms

Authors: Boris Aronov, Mayank Goswami, John Iacono, and Indu Ramesh

Published in: LIPIcs, Volume 370, 20th Scandinavian Symposium on Algorithm Theory (SWAT 2026)

Abstract
Surprisingly, the question of bounding the maximum number of operations undergone by each individual element in an algorithm - known as the fragile complexity of the algorithm - has not received much attention. In a foundational paper, Afshani et al. (2019) developed the concept of fragility and explored classic problems such as sorting and selection from this perspective. Motivated by a suggestion for future research by Afshani et al., we initiate a study of fragile complexity in computational geometry. We obtain bounds on several time-honored questions in 2D such as computing the maxima, closest pair, convex hull, triangulation, and approximate Euclidean Minimum Spanning Tree (apx-EMST). Our algorithms for the maxima, convex hull, and triangulation problems are competitive with the classical algorithms in terms of worst-case runtime and guarantee polylogarithmic fragility. We present an O(nlog²n) time algorithm that returns a 1.0125-apx-EMST and achieves O(log² n) fragility, thus matching the best known performance up to polylogarithmic factors.
Cite as

Boris Aronov, Mayank Goswami, John Iacono, and Indu Ramesh. On the Fragile Complexity of Geometric Algorithms. In 20th Scandinavian Symposium on Algorithm Theory (SWAT 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 370, pp. 2:1-2:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{aronov_et_al:LIPIcs.SWAT.2026.2,
  author =	{Aronov, Boris and Goswami, Mayank and Iacono, John and Ramesh, Indu},
  title =	{{On the Fragile Complexity of Geometric Algorithms}},
  booktitle =	{20th Scandinavian Symposium on Algorithm Theory (SWAT 2026)},
  pages =	{2:1--2:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-421-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{370},
  editor =	{Fraigniaud, Pierre},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SWAT.2026.2},
  URN =		{urn:nbn:de:0030-drops-260386},
  doi =		{10.4230/LIPIcs.SWAT.2026.2},
  annote =	{Keywords: Fragile complexity, convex hull, maxima, closest pair, algorithmic complexity}
}
Document
DOI: 10.4230/LIPIcs.SoCG.2026.64
Gap-ETH-Tight Algorithms for Hyperbolic TSP and Steiner Tree

Authors: Sándor Kisfaludi-Bak, Saeed Odak, Satyam Singh, and Geert van Wordragen

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)

Abstract
We give an approximation scheme for the TSP in d-dimensional hyperbolic space that has optimal dependence on ε under Gap-ETH. For any fixed dimension d ≥ 2 and for any ε > 0 our randomized algorithm gives a (1+ε)-approximation in time 2^O(1/ε^{d-1}) n^{1+o(1)}. We also provide an algorithm for the hyperbolic Steiner tree problem with the same running time. Our algorithm is an Arora-style dynamic program based on a randomly shifted hierarchical decomposition. However, we introduce a new hierarchical decomposition called the hybrid hyperbolic quadtree to achieve the desired large-scale structure, which deviates significantly from the recently proposed hyperbolic quadtree of Kisfaludi-Bak and Van Wordragen (JoCG'25). Moreover, we have a new non-uniform portal placement, and our structure theorem employs a new weighted crossing analysis. We believe that these techniques could form the basis for further developments in geometric optimization in curved spaces.
Cite as

Sándor Kisfaludi-Bak, Saeed Odak, Satyam Singh, and Geert van Wordragen. Gap-ETH-Tight Algorithms for Hyperbolic TSP and Steiner Tree. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 64:1-64:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{kisfaludibak_et_al:LIPIcs.SoCG.2026.64,
  author =	{Kisfaludi-Bak, S\'{a}ndor and Odak, Saeed and Singh, Satyam and van Wordragen, Geert},
  title =	{{Gap-ETH-Tight Algorithms for Hyperbolic TSP and Steiner Tree}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{64:1--64:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.64},
  URN =		{urn:nbn:de:0030-drops-258710},
  doi =		{10.4230/LIPIcs.SoCG.2026.64},
  annote =	{Keywords: Hyperbolic traveling salesman problem, TSP, Hyperbolic Steiner tree problem, Approximation scheme, Banyan, Hyperbolic geometry}
}
Document
DOI: 10.4230/LIPIcs.CSL.2026.22
On the Algorithmic Structure of Dialectica Realisers

Authors: Davide Barbarossa and Thomas Powell

Published in: LIPIcs, Volume 363, 34th EACSL Annual Conference on Computer Science Logic (CSL 2026)

Abstract
Gödel’s Dialectica interpretation is a fundamental tool for the extraction of computational content from proofs, and plays a central role in today’s proof mining program. In the past decades, it has also been studied from the perspective of programming languages, and our contribution is in that direction. Specifically, we present Dialectica as a collection of rules in the style of Hoare logic, where Dialectica is now viewed as a language for specifying procedural programs that come with a forward and backward direction. This viewpoint captures the interesting dynamics of realisers extracted by the Dialectica interpretation, and we illustrate this by defining a generalised backpropagation semantics for a fragment of this language. We envisage this work as providing a base for several future developments, both theoretical and practical, which we outline at the end.
Cite as

Davide Barbarossa and Thomas Powell. On the Algorithmic Structure of Dialectica Realisers. In 34th EACSL Annual Conference on Computer Science Logic (CSL 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 363, pp. 22:1-22:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{barbarossa_et_al:LIPIcs.CSL.2026.22,
  author =	{Barbarossa, Davide and Powell, Thomas},
  title =	{{On the Algorithmic Structure of Dialectica Realisers}},
  booktitle =	{34th EACSL Annual Conference on Computer Science Logic (CSL 2026)},
  pages =	{22:1--22:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-411-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{363},
  editor =	{Guerrini, Stefano and K\"{o}nig, Barbara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2026.22},
  URN =		{urn:nbn:de:0030-drops-254466},
  doi =		{10.4230/LIPIcs.CSL.2026.22},
  annote =	{Keywords: Dialectica interpretation, Hoare logic, Programs from proofs}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.13
Optimal Online Bipartite Matching in Degree-2 Graphs

Authors: Amey Bhangale, Arghya Chakraborty, and Prahladh Harsha

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
Online bipartite matching is a classical problem in online algorithms and we know that both the deterministic fractional and randomized integral online matchings achieve the same competitive ratio of 1-1/e. In this work, we study classes of graphs where the online degree is restricted to 2. As expected, one can achieve a competitive ratio of better than 1-1/e in both the deterministic fractional and randomized integral cases, but surprisingly, these ratios are not the same. It was already known that for fractional matching, a 0.75 competitive ratio algorithm is optimal. We show that the folklore Half-Half algorithm achieves a competitive ratio of η ≈ 0.717772… and more surprisingly, show that this is optimal by giving a matching lower-bound. This yields a separation between the two problems: deterministic fractional and randomized integral, showing that it is impossible to obtain a perfect rounding scheme.
Cite as

Amey Bhangale, Arghya Chakraborty, and Prahladh Harsha. Optimal Online Bipartite Matching in Degree-2 Graphs. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 13:1-13:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bhangale_et_al:LIPIcs.ISAAC.2025.13,
  author =	{Bhangale, Amey and Chakraborty, Arghya and Harsha, Prahladh},
  title =	{{Optimal Online Bipartite Matching in Degree-2 Graphs}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{13:1--13:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.13},
  URN =		{urn:nbn:de:0030-drops-249216},
  doi =		{10.4230/LIPIcs.ISAAC.2025.13},
  annote =	{Keywords: Online Algorithm, Bipartite matching}
}
Document
DOI: 10.4230/OASIcs.ATMOS.2025.15
Exact and Heuristic Dynamic Taxi Sharing with Transfers Using Shortest-Path Speedup Techniques

Authors: Johannes Breitling and Moritz Laupichler

Published in: OASIcs, Volume 137, 25th Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2025)

Abstract
We introduce a first-of-its-kind efficient, exact algorithm for the dynamic taxi-sharing problem with single-transfer journeys, i.e., a dispatcher that assigns traveler requests to a fleet of shared taxi-like vehicles allowing transfers between vehicles. We extend an existing no-transfer solution by collecting all viable pickup and dropoff vehicles for a request and computing the optimal transfer point for every pair of vehicles. We analyze underlying shortest-path problems and employ state-of-the-art routing algorithms to compute distances on-the-fly, which serves as the basis of dispatching requests with exact and up-to-date travel time information. We utilize constraints on existing routes, pruning techniques for transfer points, and both instruction- and thread-level parallelism to speed up the computation of the best assignment for every traveler. In addition to the exact variant, we propose a tunable heuristic approach that sacrifices solution quality in favor of improved running time. We evaluate our algorithm on a large road network with realistic input sets (up to 150000 requests). We demonstrate the effectiveness of our speedup techniques and the heuristic. We show first results on the benefits of transfers for taxi sharing on dense request sets, proving that our algorithm is well suited for the analysis of taxi sharing with transfers on large input instances.
Cite as

Johannes Breitling and Moritz Laupichler. Exact and Heuristic Dynamic Taxi Sharing with Transfers Using Shortest-Path Speedup Techniques. In 25th Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2025). Open Access Series in Informatics (OASIcs), Volume 137, pp. 15:1-15:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{breitling_et_al:OASIcs.ATMOS.2025.15,
  author =	{Breitling, Johannes and Laupichler, Moritz},
  title =	{{Exact and Heuristic Dynamic Taxi Sharing with Transfers Using Shortest-Path Speedup Techniques}},
  booktitle =	{25th Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2025)},
  pages =	{15:1--15:22},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-404-8},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{137},
  editor =	{Sauer, Jonas and Schmidt, Marie},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.ATMOS.2025.15},
  URN =		{urn:nbn:de:0030-drops-247718},
  doi =		{10.4230/OASIcs.ATMOS.2025.15},
  annote =	{Keywords: Dynamic taxi sharing, ride pooling, dial-a-ride problem, transfers, route planning}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.5
External-Memory Priority Queues with Optimal Insertions

Authors: Gerth Stølting Brodal, Michael T. Goodrich, John Iacono, Jared Lo, Ulrich Meyer, Victor Pagan, Nodari Sitchinava, and Rolf Svenning

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
We present an external-memory priority queue structure supporting Insert and DeleteMin with amortized 𝒪(1) and 𝒪(lg N) comparisons, respectively, and amortized 𝒪(1/B) and 𝒪(1/B log_{M/B} N/B) I/Os, respectively. Here, M is the size of the internal memory, B is the block size of I/Os between internal and external memory, and N is the number of elements in the priority queue just before an operation is performed. Previous external-memory priority queues required amortized 𝒪(lg N) comparisons and 𝒪(1/B log_{M/B} N/B) I/Os for both Insert and DeleteMin. The construction requires the minimal assumption M ≥ 2B.
Cite as

Gerth Stølting Brodal, Michael T. Goodrich, John Iacono, Jared Lo, Ulrich Meyer, Victor Pagan, Nodari Sitchinava, and Rolf Svenning. External-Memory Priority Queues with Optimal Insertions. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 5:1-5:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{brodal_et_al:LIPIcs.ESA.2025.5,
  author =	{Brodal, Gerth St{\o}lting and Goodrich, Michael T. and Iacono, John and Lo, Jared and Meyer, Ulrich and Pagan, Victor and Sitchinava, Nodari and Svenning, Rolf},
  title =	{{External-Memory Priority Queues with Optimal Insertions}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{5:1--5:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.5},
  URN =		{urn:nbn:de:0030-drops-244734},
  doi =		{10.4230/LIPIcs.ESA.2025.5},
  annote =	{Keywords: priority queues, external memory, cache aware, amortized complexity}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.82
Buffered Partially-Persistent External-Memory Search Trees

Authors: Gerth Stølting Brodal, Casper Moldrup Rysgaard, and Rolf Svenning

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
We present an optimal partially-persistent external-memory search tree with amortized I/O bounds matching those achieved by the non-persistent B^{ε}-tree by Brodal and Fagerberg [SODA 2003]. In a partially-persistent data structure, each update creates a new version. All past versions can be queried, but only the current version can be updated. Operations should be efficient with respect to the size N_v of the accessed version v. For any parameter 0 < ε < 1, our data structure supports insertions and deletions in amortized 𝒪(1/(ε B^{1 - ε}) log_B N_v) I/Os, where B is the external-memory block size. It also supports successor and range reporting queries in amortized 𝒪(1/ε log_B N_v + K/B) I/Os, where K is the number of keys reported. The space usage of the data structure is linear in the total number of updates. We make the standard and minimal assumption that the internal memory has size M ≥ 2B. The previous state-of-the-art external-memory partially-persistent search tree by Arge, Danner and Teh [JEA 2003] supports all operations in worst-case 𝒪(log_B N_v + K/B) I/Os, matching the bounds achieved by the classical B-tree by Bayer and McCreight [Acta Informatica 1972]. Our data structure successfully combines buffering updates with partial persistence. The I/O bounds can also be achieved in the worst-case sense, by slightly modifying our data structure and under the requirement that the memory size M = Ω(B^{1-ε} log₂(max_v N_v)). For updates, where the I/O bound is o(1), we assume that the I/Os are performed evenly spread out among the updates (by performing buffer-overflows incrementally). The worst-case result slightly improves the memory requirement over the previous ephemeral external-memory dictionary by Das, Iacono, and Nekrich (ISAAC 2022), who achieved matching worst-case I/O bounds but required M = Ω(B log_B N), where N is the size of the current dictionary.
Cite as

Gerth Stølting Brodal, Casper Moldrup Rysgaard, and Rolf Svenning. Buffered Partially-Persistent External-Memory Search Trees. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 82:1-82:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{brodal_et_al:LIPIcs.ESA.2025.82,
  author =	{Brodal, Gerth St{\o}lting and Rysgaard, Casper Moldrup and Svenning, Rolf},
  title =	{{Buffered Partially-Persistent External-Memory Search Trees}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{82:1--82:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.82},
  URN =		{urn:nbn:de:0030-drops-245507},
  doi =		{10.4230/LIPIcs.ESA.2025.82},
  annote =	{Keywords: B-tree, buffered updates, partial persistence, external memory}
}
Document
DOI: 10.4230/LIPIcs.DNA.31.4
Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems

Authors: Inhoo Lee, Salvador Buse, and Erik Winfree

Published in: LIPIcs, Volume 347, 31st International Conference on DNA Computing and Molecular Programming (DNA 31) (2025)

Abstract
Many molecular systems are best understood in terms of prototypical species and reactions. The central dogma and related biochemistry are rife with examples: gene i is transcribed into RNA i, which is translated into protein i; kinase n phosphorylates substrate m; protein p dimerizes with protein q. Engineered nucleic acid systems also often have this form: oligonucleotide i hybridizes to complementary oligonucleotide j; signal strand n displaces the output of seesaw gate m; hairpin p triggers the opening of target q. When there are many variants of a small number of prototypes, it can be conceptually cleaner and computationally more efficient to represent the full system in terms of indexed species (e.g. for dimerization, M_p, D_pq) and indexed reactions (M_p + M_q → D_pq). Here, we formalize the Indexed Chemical Reaction Network (ICRN) model and describe a Python software package designed to simulate such systems in the well-mixed and reaction-diffusion settings, using a differentiable programming framework originally developed for large-scale neural network models, taking advantage of GPU acceleration when available. Notably, this framework makes it straightforward to train the models’ initial conditions and rate constants to optimize a target behavior, such as matching experimental data, performing a computation, or exhibiting spatial pattern formation. The natural map of indexed chemical reaction networks onto neural network formalisms provides a tangible yet general perspective for translating concepts and techniques from the theory and practice of neural computation into the design of biomolecular systems.
Cite as

Inhoo Lee, Salvador Buse, and Erik Winfree. Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems. In 31st International Conference on DNA Computing and Molecular Programming (DNA 31). Leibniz International Proceedings in Informatics (LIPIcs), Volume 347, pp. 4:1-4:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lee_et_al:LIPIcs.DNA.31.4,
  author =	{Lee, Inhoo and Buse, Salvador and Winfree, Erik},
  title =	{{Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems}},
  booktitle =	{31st International Conference on DNA Computing and Molecular Programming (DNA 31)},
  pages =	{4:1--4:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-399-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{347},
  editor =	{Schaeffer, Josie and Zhang, Fei},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.31.4},
  URN =		{urn:nbn:de:0030-drops-238534},
  doi =		{10.4230/LIPIcs.DNA.31.4},
  annote =	{Keywords: Differentiable Programming, Chemical Reaction Networks, Reaction-Diffusion Systems}
}
Document
DOI: 10.4230/DagRep.14.10.76
Machine Learning Augmented Algorithms for Combinatorial Optimization Problems (Dagstuhl Seminar 24441)

Authors: Deepak Ajwani, Bistra Dilkina, Tias Guns, and Ulrich Carsten Meyer

Published in: Dagstuhl Reports, Volume 14, Issue 10 (2025)

Abstract
Combinatorial optimization problems are pervasive across critical domains, including business analytics, engineering, supply chain management, transportation, and bioinformatics. Many of these problems are NP-hard, posing significant challenges for even moderately sized instances. Moreover, even when polynomial-time algorithms exist, their practical implementation can be computationally expensive for real-world applications. This has driven decades of research across diverse fields, encompassing exact and approximation algorithms, parameterized algorithms, algorithm engineering, operations research, optimization solvers (such as mixed-integer linear programming and constraint programming solvers), and nature-inspired metaheuristics. Recently, there has been a surge in research exploring the synergistic integration of machine learning techniques with algorithmic insights and optimization solvers to enhance the scalability of solving combinatorial optimization problems. However, research efforts in this area are currently fragmented across several distinct communities, including those focused on "Learning to scale optimization solvers," "Algorithm Engineering," "Algorithms with predictions," and "Decision-focused learning." This seminar brought together researchers from these diverse communities, fostering a dialogue on effectively combining algorithm engineering techniques, optimization solvers, and machine learning to address these challenging problems. The seminar facilitated the development of a shared vocabulary, clarifying similarities and distinctions between concepts across different research areas. Furthermore, significant progress was made in identifying key research directions for the future advancement of this field. We anticipate that these outcomes will serve as a valuable roadmap for advancing this exciting research area.
Cite as

Deepak Ajwani, Bistra Dilkina, Tias Guns, and Ulrich Carsten Meyer. Machine Learning Augmented Algorithms for Combinatorial Optimization Problems (Dagstuhl Seminar 24441). In Dagstuhl Reports, Volume 14, Issue 10, pp. 76-100, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{ajwani_et_al:DagRep.14.10.76,
  author =	{Ajwani, Deepak and Dilkina, Bistra and Guns, Tias and Meyer, Ulrich Carsten},
  title =	{{Machine Learning Augmented Algorithms for Combinatorial Optimization Problems (Dagstuhl Seminar 24441)}},
  pages =	{76--100},
  journal =	{Dagstuhl Reports},
  ISSN =	{2192-5283},
  year =	{2025},
  volume =	{14},
  number =	{10},
  editor =	{Ajwani, Deepak and Dilkina, Bistra and Guns, Tias and Meyer, Ulrich Carsten},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagRep.14.10.76},
  URN =		{urn:nbn:de:0030-drops-230216},
  doi =		{10.4230/DagRep.14.10.76},
  annote =	{Keywords: Algorithm Engineering, Combinatorial Optimization, Constraint Solvers, Machine Learning}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.13
Hyperbolic Random Graphs: Clique Number and Degeneracy with Implications for Colouring

Authors: Samuel Baguley, Yannic Maus, Janosch Ruff, and George Skretas

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
Hyperbolic random graphs inherit many properties that are present in real-world networks. The hyperbolic geometry imposes a scale-free network with a strong clustering coefficient. Other properties like a giant component, the small world phenomena and others follow. This motivates the design of simple algorithms for hyperbolic random graphs. In this paper we consider threshold hyperbolic random graphs (HRGs). Greedy heuristics are commonly used in practice as they deliver a good approximations to the optimal solution even though their theoretical analysis would suggest otherwise. A typical example for HRGs are degeneracy-based greedy algorithms [Bläsius, Fischbeck; Transactions of Algorithms '24]. In an attempt to bridge this theory-practice gap we characterise the parameter of degeneracy yielding a simple approximation algorithm for colouring HRGs. The approximation ratio of our algorithm ranges from (2/√3) to 4/3 depending on the power-law exponent of the model. We complement our findings for the degeneracy with new insights on the clique number of hyperbolic random graphs. We show that degeneracy and clique number are substantially different and derive an improved upper bound on the clique number. Additionally, we show that the core of HRGs does not constitute the largest clique. Lastly we demonstrate that the degeneracy of the closely related standard model of geometric inhomogeneous random graphs behaves inherently different compared to the one of hyperbolic random graphs.
Cite as

Samuel Baguley, Yannic Maus, Janosch Ruff, and George Skretas. Hyperbolic Random Graphs: Clique Number and Degeneracy with Implications for Colouring. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 13:1-13:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{baguley_et_al:LIPIcs.STACS.2025.13,
  author =	{Baguley, Samuel and Maus, Yannic and Ruff, Janosch and Skretas, George},
  title =	{{Hyperbolic Random Graphs: Clique Number and Degeneracy with Implications for Colouring}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{13:1--13:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.13},
  URN =		{urn:nbn:de:0030-drops-228386},
  doi =		{10.4230/LIPIcs.STACS.2025.13},
  annote =	{Keywords: hyperbolic random graphs, scale-free networks, power-law graphs, cliques, degeneracy, vertex colouring, chromatic number}
}
Document
Academic Track
DOI: 10.4230/OASIcs.SAIA.2024.12
A View on Vulnerabilites: The Security Challenges of XAI (Academic Track)

Authors: Elisabeth Pachl, Fabian Langer, Thora Markert, and Jeanette Miriam Lorenz

Published in: OASIcs, Volume 126, Symposium on Scaling AI Assessments (SAIA 2024)

Abstract
Modern deep learning methods have long been considered as black-boxes due to their opaque decision-making processes. Explainable Artificial Intelligence (XAI), however, has turned the tables: it provides insight into how these models work, promoting transparency that is crucial for accountability. Yet, recent developments in adversarial machine learning have highlighted vulnerabilities in XAI methods, raising concerns about security, reliability and trustworthiness, particularly in sensitive areas like healthcare and autonomous systems. Awareness of the potential risks associated with XAI is needed as its adoption increases, driven in part by the need to enhance compliance to regulations. This survey provides a holistic perspective on the security and safety landscape surrounding XAI, categorizing research on adversarial attacks against XAI and the misuse of explainability to enhance attacks on AI systems, such as evasion and privacy breaches. Our contribution includes identifying current insecurities in XAI and outlining future research directions in adversarial XAI. This work serves as an accessible foundation and outlook to recognize potential research gaps and define future directions. It identifies data modalities, such as time-series or graph data, and XAI methods that have not been extensively investigated for vulnerabilities in current research.
Cite as

Elisabeth Pachl, Fabian Langer, Thora Markert, and Jeanette Miriam Lorenz. A View on Vulnerabilites: The Security Challenges of XAI (Academic Track). In Symposium on Scaling AI Assessments (SAIA 2024). Open Access Series in Informatics (OASIcs), Volume 126, pp. 12:1-12:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{pachl_et_al:OASIcs.SAIA.2024.12,
  author =	{Pachl, Elisabeth and Langer, Fabian and Markert, Thora and Lorenz, Jeanette Miriam},
  title =	{{A View on Vulnerabilites: The Security Challenges of XAI}},
  booktitle =	{Symposium on Scaling AI Assessments (SAIA 2024)},
  pages =	{12:1--12:23},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-357-7},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{126},
  editor =	{G\"{o}rge, Rebekka and Haedecke, Elena and Poretschkin, Maximilian and Schmitz, Anna},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SAIA.2024.12},
  URN =		{urn:nbn:de:0030-drops-227523},
  doi =		{10.4230/OASIcs.SAIA.2024.12},
  annote =	{Keywords: Explainability, XAI, Transparency, Adversarial Machine Learning, Security, Vulnerabilities}
}
Artifact
Software
DOI: 10.4230/artifacts.22475
K-Rho-Shortcutting Heuristics

Authors: Alexander Leonhardt, Ulrich Meyer, and Manuel Penschuck

Abstract
Cite as

Alexander Leonhardt, Ulrich Meyer, Manuel Penschuck. K-Rho-Shortcutting Heuristics (Software). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@misc{dagstuhl-artifact-22475,
   title = {{K-Rho-Shortcutting Heuristics}}, 
   author = {Leonhardt, Alexander and Meyer, Ulrich and Penschuck, Manuel},
   note = {Software, swhId: \href{https://archive.softwareheritage.org/swh:1:dir:8965d090c1d32ea024b1bb4b111329990a156b37;origin=https://github.com/alleonhardt/k-rho-shortcutting;visit=swh:1:snp:8185b97dfef89ed4f4b0e5ae16a2b7baf76ea267;anchor=swh:1:rev:54e9d8b70fe67eb89761792fc4081482c6f11c9d}{\texttt{swh:1:dir:8965d090c1d32ea024b1bb4b111329990a156b37}} (visited on 2024-11-28)},
   url = {https://github.com/alleonhardt/k-rho-shortcutting},
   doi = {10.4230/artifacts.22475},
}
Document
DOI: 10.4230/LIPIcs.ESA.2024.84
Insights into (k, ρ)-Shortcutting Algorithms

Authors: Alexander Leonhardt, Ulrich Meyer, and Manuel Penschuck

Published in: LIPIcs, Volume 308, 32nd Annual European Symposium on Algorithms (ESA 2024)

Abstract
A graph is called a (k, ρ)-graph iff every node can reach ρ of its nearest neighbors in at most k hops. This property has proven useful in the analysis and design of parallel shortest-path algorithms [Blelloch et al., 2016; Dong et al., 2021]. Any graph can be transformed into a (k, ρ)-graph by adding shortcuts. Formally, the (k,ρ)-Minimum-Shortcut-Problem (kρ-MSP) asks to find an appropriate shortcut set of minimal cardinality. We show that kρ-MSP is NP-complete in the practical regime of k ≥ 3 and ρ = Θ(n^ε) for ε > 0. With a related construction, we bound the approximation factor of known kρ-MSP heuristics [Blelloch et al., 2016] from below and propose algorithmic countermeasures improving the approximation quality. Further, we describe an integer linear problem (ILP) that optimally solves kρ-MSP. Finally, we compare the practical performance and quality of all algorithms empirically.
Cite as

Alexander Leonhardt, Ulrich Meyer, and Manuel Penschuck. Insights into (k, ρ)-Shortcutting Algorithms. In 32nd Annual European Symposium on Algorithms (ESA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 308, pp. 84:1-84:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{leonhardt_et_al:LIPIcs.ESA.2024.84,
  author =	{Leonhardt, Alexander and Meyer, Ulrich and Penschuck, Manuel},
  title =	{{Insights into (k, \rho)-Shortcutting Algorithms}},
  booktitle =	{32nd Annual European Symposium on Algorithms (ESA 2024)},
  pages =	{84:1--84:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-338-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{308},
  editor =	{Chan, Timothy and Fischer, Johannes and Iacono, John and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2024.84},
  URN =		{urn:nbn:de:0030-drops-211554},
  doi =		{10.4230/LIPIcs.ESA.2024.84},
  annote =	{Keywords: Complexity, Approximation, Optimal algorithms, Parallel shortest path}
}
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