27 Search Results for "Myers, Andrew C."

Document
DOI: 10.4230/LIPIcs.STACS.2026.62
Relative Compressed Reverse Suffix Array

Authors: Muhammed Oguzhan Kulekci, Mano Prakash Parthasarathi, Rahul Shah, and Sharma V. Thankachan

Published in: LIPIcs, Volume 364, 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)

Abstract
Suffix trees and suffix arrays are two fundamental data structures in the field of string algorithms. For a string (a.k.a. text or sequence) of length n over an alphabet of size σ, these structures typically require O(nlog n) bits of space. The FM-index provides a compressed representation of the suffix array in ≈ nlog σ bits, allowing for efficient queries on both the suffix array and its inverse array in near logarithmic time. In certain applications, such as approximate pattern matching (i.e., with wildcards, mismatches, edits), there is a need to access the suffix array of a text, as well as the suffix array of text’s reverse. Motivated by this, we explore the possibility of encoding the suffix array of the reversed text in a compact form, assuming the availability of the FM-index for the original text. Our first solution is an O(n)-bit (relative) encoding of the suffix array of the reversed text, with the time for decoding an entry being only O(log^*n) times that of decoding an entry in the text’s suffix array using FM-index. We then demonstrate how to reduce the space to O(n/κ) bits for a parameter κ, while multiplicative factor in time becomes approximately O(κlog^*n+κ³). We can also support inverse suffix array and longest common extension queries on the reversed text. These results are achieved through some careful and non-trivial application of various succinct data structure techniques.
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Muhammed Oguzhan Kulekci, Mano Prakash Parthasarathi, Rahul Shah, and Sharma V. Thankachan. Relative Compressed Reverse Suffix Array. In 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 364, pp. 62:1-62:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{kulekci_et_al:LIPIcs.STACS.2026.62,
  author =	{Kulekci, Muhammed Oguzhan and Parthasarathi, Mano Prakash and Shah, Rahul and Thankachan, Sharma V.},
  title =	{{Relative Compressed Reverse Suffix Array}},
  booktitle =	{43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)},
  pages =	{62:1--62:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-412-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{364},
  editor =	{Mahajan, Meena and Manea, Florin and McIver, Annabelle and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2026.62},
  URN =		{urn:nbn:de:0030-drops-255512},
  doi =		{10.4230/LIPIcs.STACS.2026.62},
  annote =	{Keywords: String Matching, Text Indexing, Data Structures, Suffix Trees}
}
Document
DOI: 10.4230/LIPIcs.CSL.2026.45
Reasoning About Quality in Hyperproperties

Authors: Samuel Graepler, Benjamin Monmege, and Jean-Marc Talbot

Published in: LIPIcs, Volume 363, 34th EACSL Annual Conference on Computer Science Logic (CSL 2026)

Abstract
Hyperproperties allow one to specify properties of systems that inherently involve not single executions of the system, but several of them at once: observational determinism and non-inference are two examples of such properties used to study the security of systems. Logics like HyperLTL have been studied in the past to model check hyperproperties of systems. However, most of the time, requiring strict security properties is actually ineffective as systems do not meet such requirements. To overcome this issue, we introduce qualitative reasoning in HyperLTL, inspired by a similar work on LTL by Almagor, Boker and Kupferman [Almagor et al., 2016] where a formula has a value in the interval [0, 1], obtained by considering either a propositional quality (how much the specification is satisfied), or a temporal quality (when the specification is satisfied). We show decidability of the approximated model checking problem, as well as the model checking of large fragments.
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Samuel Graepler, Benjamin Monmege, and Jean-Marc Talbot. Reasoning About Quality in Hyperproperties. In 34th EACSL Annual Conference on Computer Science Logic (CSL 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 363, pp. 45:1-45:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{graepler_et_al:LIPIcs.CSL.2026.45,
  author =	{Graepler, Samuel and Monmege, Benjamin and Talbot, Jean-Marc},
  title =	{{Reasoning About Quality in Hyperproperties}},
  booktitle =	{34th EACSL Annual Conference on Computer Science Logic (CSL 2026)},
  pages =	{45:1--45:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-411-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{363},
  editor =	{Guerrini, Stefano and K\"{o}nig, Barbara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2026.45},
  URN =		{urn:nbn:de:0030-drops-254704},
  doi =		{10.4230/LIPIcs.CSL.2026.45},
  annote =	{Keywords: Hyperlogics, Automata-based model checking, Quantitative verification}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.19
Limitations to Computing Quadratic Functions on Reed-Solomon Encoded Data

Authors: Keller Blackwell and Mary Wootters

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
We study the problem of low-bandwidth non-linear computation on Reed-Solomon encoded data. Given an [n,k] Reed-Solomon encoding of a message vector 𝐟 ∈ 𝔽_q^k, and a polynomial g ∈ 𝔽_q[X₁, X₂, …, X_k], a user wishing to evaluate g(𝐟) is given local query access to each codeword symbol. The query response is allowed to be the output of an arbitrary function evaluated locally on the codeword symbol, and the user’s aim is to minimize the total information downloaded in order to compute g(𝐟). This problem has been studied before for linear functions g; in this work we initiate the study of non-linear functions by starting with quadratic monomials. For q = p^e and distinct i,j ∈ [k], we show that any scheme evaluating the quadratic monomial g_{i,j} := X_i X_j must download at least 2 log₂(q-1) - 3 bits of information when p is an odd prime, and at least 2log₂(q-2) -4 bits when p = 2. When k = 2, our result shows that one cannot do significantly better than the naive bound of k log₂(q) bits, which is enough to recover all of 𝐟. This contrasts sharply with prior work for low-bandwidth evaluation of linear functions g(𝐟) over Reed-Solomon encoded data, for which it is possible to substantially improve upon this bound [Venkatesan Guruswami and Mary Wootters, 2016; Tamo et al., 2018; Shutty and Wootters, 2021; Kiah et al., 2024; Con and Tamo, 2022]. Some proofs have been omitted from this extended abstract; the full version can be found at [Keller Blackwell and Mary Wootters, 2025].
Cite as

Keller Blackwell and Mary Wootters. Limitations to Computing Quadratic Functions on Reed-Solomon Encoded Data. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 19:1-19:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{blackwell_et_al:LIPIcs.ITCS.2026.19,
  author =	{Blackwell, Keller and Wootters, Mary},
  title =	{{Limitations to Computing Quadratic Functions on Reed-Solomon Encoded Data}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{19:1--19:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.19},
  URN =		{urn:nbn:de:0030-drops-253064},
  doi =		{10.4230/LIPIcs.ITCS.2026.19},
  annote =	{Keywords: Distributed computation, Reed-Solomon codes}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.71
Lower Bounds on FSS from Dynamic Data Structures

Authors: Niv Gilboa and Daniel Weber

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
In Function Secret Sharing (FSS), a dealer with a given function f: {0,1}ⁿ → 𝔾 from n bits to a commutative group 𝔾 such that f is in a function class ℱ shares succinct keys with two properties. Evaluating each key separately on a common input x results in additive shares of f(x) and any subset of the keys does not provide information on f. Two-party FSS schemes which are reducible to One-way Functions (OWF) have applications in cryptography, complexity, and in practical data security systems. We establish a two-way transformation between a two-party FSS scheme for a function class ℱ, which is black-box reducible to an OWF, or even black-box reducible to a family of Pseudo-Random Functions (PRF) and a dynamic data structure that supports range queries on ℱ. A data structure of this type enables dynamically adding functions to a multiset of functions F ⊆ ℱ, and answering range queries on the output of F, i.e., returning ∑_{f ∈ F} f(x) for a query x. The data structures are defined in one of several models which abstract RAM. The correspondence together with known lower bounds on the update time and the query time in data structures leads to the first non-trivial lower bounds on FSS schemes which are black-box reducible to PRF. These lower bounds apply to FSS schemes with polynomial key size and include: - For ℱ^d_{box}, the class of all functions which assign a constant group element β ∈ 𝔾 to any input in a specified d-dimensional box and 0 to all other inputs: if the key sharing function, Gen, runs in time polynomial in n and the evaluation function is Eval then: - If d ≥ 2 and 𝔾 = ℤ₂ then Eval’s running time is Ω ((n^{3/2})/(log³ n)). - If d ≥ 2 and 𝔾 is cyclic such that log |𝔾| = (1 + ε) n then Eval’s running time is Ω ((n/(log n)) ²). - If d > 2 is a constant and further, Gen and Eval correspond to operations on data structures in the Oblivious Group Model (this includes all known FSS from OWF techniques), then the product of Eval’s time and the key size is Ω(n^{d-1}). - For ℱ_{mono}, the class of all monomials ax^b ∈ 𝔽_{2ⁿ}[X] such that b ≤ B, assuming n^{ω(1)} ≤ B ≤ 2^{n/4}: if Gen runs in polynomial time, then Eval’s running time is Ω ((n √{log B})/(log² n)).
Cite as

Niv Gilboa and Daniel Weber. Lower Bounds on FSS from Dynamic Data Structures. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 71:1-71:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{gilboa_et_al:LIPIcs.ITCS.2026.71,
  author =	{Gilboa, Niv and Weber, Daniel},
  title =	{{Lower Bounds on FSS from Dynamic Data Structures}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{71:1--71:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.71},
  URN =		{urn:nbn:de:0030-drops-253585},
  doi =		{10.4230/LIPIcs.ITCS.2026.71},
  annote =	{Keywords: FSS, Data Structures, Lower Bounds, Black-Box Reductions}
}
Document
DOI: 10.4230/LIPIcs.OPODIS.2025.8
Weaker Assumptions for Asymmetric Trust

Authors: Ignacio Amores-Sesar, Christian Cachin, Simon Holmgaard Kamp, and Juan Villacis

Published in: LIPIcs, Volume 361, 29th International Conference on Principles of Distributed Systems (OPODIS 2025)

Abstract
In distributed systems with asymmetric trust, each participant is free to make its own trust assumptions about others, captured by an asymmetric quorum system. This contrasts with ordinary, symmetric quorum systems and threshold models, where trust assumptions are uniformly shared among participants. Fundamental problems like reliable broadcast and consensus are unsolvable in the asymmetric model if quorum systems satisfy only the classical properties of consistency and availability. Existing approaches overcome this by introducing stronger assumptions. We show that some of these assumptions are overly restrictive, so much so that they effectively eliminate the benefits of asymmetric trust. To address this, we propose a new approach to characterize asymmetric problems and, building upon it, present algorithms for reliable broadcast and consensus that require weaker assumptions than previous solutions. Our methods are general and can be extended to other core problems in systems with asymmetric trust.
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Ignacio Amores-Sesar, Christian Cachin, Simon Holmgaard Kamp, and Juan Villacis. Weaker Assumptions for Asymmetric Trust. In 29th International Conference on Principles of Distributed Systems (OPODIS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 361, pp. 8:1-8:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{amoressesar_et_al:LIPIcs.OPODIS.2025.8,
  author =	{Amores-Sesar, Ignacio and Cachin, Christian and Kamp, Simon Holmgaard and Villacis, Juan},
  title =	{{Weaker Assumptions for Asymmetric Trust}},
  booktitle =	{29th International Conference on Principles of Distributed Systems (OPODIS 2025)},
  pages =	{8:1--8:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-409-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{361},
  editor =	{Arusoaie, Andrei and Onica, Emanuel and Spear, Michael and Tucci-Piergiovanni, Sara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.OPODIS.2025.8},
  URN =		{urn:nbn:de:0030-drops-251812},
  doi =		{10.4230/LIPIcs.OPODIS.2025.8},
  annote =	{Keywords: Asymmetric Trust, Quorum Systems, Reliable Broadcast, Consensus}
}
Document
DOI: 10.4230/LIPIcs.OPODIS.2025.9
Contention-Aware Cooperation

Authors: Timothé Albouy, Davide Frey, Mathieu Gestin, Michel Raynal, and François Taïani

Published in: LIPIcs, Volume 361, 29th International Conference on Principles of Distributed Systems (OPODIS 2025)

Abstract
As shown by Reliable Broadcast and Consensus, cooperation among a set of independent computing entities (sequential processes) is crucial in fault-tolerant distributed computing. Considering n-process asynchronous message-passing systems where some processes may be Byzantine, this paper introduces a novel cooperation abstraction, Contention-Aware Cooperation (CAC). While Reliable Broadcast is a one-to-n cooperation abstraction and Consensus is an n-to-n cooperation abstraction, CAC is a d-to-n cooperation abstraction where d (1 ≤ d ≤ n) varies with each run and remains unknown to the processes. Correct processes accept the same set of 𝓁 pairs ⟨ v,i ⟩ (v is the value proposed by p_i) from the d proposer processes, where 1 ≤ 𝓁 ≤ d and (as d) 𝓁 remains unknown to the processes (except in specific cases). Those 𝓁 values are accepted one at a time, potentially in different orders at each process. In addition, CAC provides each process with an imperfect oracle that provides insights into the values that they may accept in the future. Interestingly, the CAC abstraction is particularly efficient in favorable circumstances, when the oracle becomes accurate, which processes can detect. To illustrate its practical utility, the paper details two applications leveraging CAC: a fast consensus implementation optimized for low contention (named Cascading Consensus), and a novel naming problem that can be solved under full asynchrony. All algorithms presented require signatures.
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Timothé Albouy, Davide Frey, Mathieu Gestin, Michel Raynal, and François Taïani. Contention-Aware Cooperation. In 29th International Conference on Principles of Distributed Systems (OPODIS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 361, pp. 9:1-9:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{albouy_et_al:LIPIcs.OPODIS.2025.9,
  author =	{Albouy, Timoth\'{e} and Frey, Davide and Gestin, Mathieu and Raynal, Michel and Ta\"{i}ani, Fran\c{c}ois},
  title =	{{Contention-Aware Cooperation}},
  booktitle =	{29th International Conference on Principles of Distributed Systems (OPODIS 2025)},
  pages =	{9:1--9:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-409-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{361},
  editor =	{Arusoaie, Andrei and Onica, Emanuel and Spear, Michael and Tucci-Piergiovanni, Sara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.OPODIS.2025.9},
  URN =		{urn:nbn:de:0030-drops-251823},
  doi =		{10.4230/LIPIcs.OPODIS.2025.9},
  annote =	{Keywords: Agreement, Asynchronous message-passing system, Byzantine processes, Conflict detection, Consensus, Cooperation abstraction, Distributed computing, Fault tolerance, Optimistically terminating consensus, Short-naming}
}
Document
DOI: 10.4230/LIPIcs.DISC.2025.42
Kudzu: Fast and Simple High-Throughput BFT

Authors: Victor Shoup, Jakub Sliwinski, and Yann Vonlanthen

Published in: LIPIcs, Volume 356, 39th International Symposium on Distributed Computing (DISC 2025)

Abstract
We present Kudzu, a high-throughput atomic broadcast protocol with an integrated fast path. Our contribution is based on the combination of two lines of work. Firstly, our protocol achieves finality in just two rounds of communication if all but p out of n = 3f + 2p + 1 participating replicas behave correctly, where f is the number of Byzantine faults that are tolerated. Due to the seamless integration of the fast path, even in the presence of more than p faults, our protocol maintains state-of-the-art characteristics. Secondly, our protocol utilizes the bandwidth of participating replicas in a balanced way, alleviating the bottleneck at the leader, and thus enabling high throughput. This is achieved by disseminating blocks using erasure codes. Despite combining a novel set of advantages, Kudzu is remarkably simple: intricacies such as "progress certificates", complex view changes, and speculative execution are avoided.
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Victor Shoup, Jakub Sliwinski, and Yann Vonlanthen. Kudzu: Fast and Simple High-Throughput BFT. In 39th International Symposium on Distributed Computing (DISC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 356, pp. 42:1-42:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{shoup_et_al:LIPIcs.DISC.2025.42,
  author =	{Shoup, Victor and Sliwinski, Jakub and Vonlanthen, Yann},
  title =	{{Kudzu: Fast and Simple High-Throughput BFT}},
  booktitle =	{39th International Symposium on Distributed Computing (DISC 2025)},
  pages =	{42:1--42:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-402-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{356},
  editor =	{Kowalski, Dariusz R.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DISC.2025.42},
  URN =		{urn:nbn:de:0030-drops-248597},
  doi =		{10.4230/LIPIcs.DISC.2025.42},
  annote =	{Keywords: Consensus, Blockchain, Byzantine Fault Tolerance, Fast Path, State Machine Replication}
}
Document
DOI: 10.4230/LIPIcs.AFT.2025.4
Proxying Is Enough: Security of Proxying in TLS Oracles and AEAD Context Unforgeability

Authors: Zhongtang Luo, Yanxue Jia, Yaobin Shen, and Aniket Kate

Published in: LIPIcs, Volume 354, 7th Conference on Advances in Financial Technologies (AFT 2025)

Abstract
TLS allows a client to securely obtain data from a server, but does not allow the client to offer the data provenance to an external node. TLS oracle protocols are used to solve the problem. Specifically, the verifier node, as an external node, is convinced that the data is indeed coming from a pre-defined TLS server, while remaining unable to access the client’s credentials (e.g., password). Previous TLS oracle protocols such as DECO (CCS 2020) enforced the communication pattern of server-client-verifier and utilized a novel three-party handshake process during TLS to ensure data integrity against potential tempering by the client. However, this approach introduces a significant performance penalty on the client and the verifier. Most recently, some works have proposed to reduce the overhead by putting the verifier (as a proxy) between the server and the client such that the correct TLS transcript is available to the verifier. Nevertheless, these works still rely on heavy two-party secure computations or zero-knowledge proofs. In this work, we push the proxy model to the extreme, where the verifier only needs to forward messages without performing any other heavy computational operations when only the credentials should be protected and the data retrieved from the server could be open to the verifier. Surprisingly, we prove that the thorough proxy model is enough to guarantee security in some common scenarios, allowing a saving of 60-90% in running time under common scenarios. We first formalize the proxy-based Oracle protocol and functionality that allows the verifier to directly proxy client-server TLS communication, without entering a three-party handshake or interfering with the connection in any way. We then show that for common TLS-based higher-level protocols such as HTTPS, data integrity to the verifier proxy is ensured by the variable padding built into the HTTP protocol semantics. On the other hand, if a TLS-based protocol comes without variable padding, we demonstrate that data integrity cannot be guaranteed. In this context, we then study the case where the TLS response is pre-determined and cannot be tampered with during the connection. We propose the concept of context unforgeability and show that data integrity can also be guaranteed as long as the underlying Authenticated Encryption with Associated Data (AEAD) satisfies context unforgeability. We further show that ChaCha20-Poly1305 satisfies the concept while AES-GCM does not.
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Zhongtang Luo, Yanxue Jia, Yaobin Shen, and Aniket Kate. Proxying Is Enough: Security of Proxying in TLS Oracles and AEAD Context Unforgeability. In 7th Conference on Advances in Financial Technologies (AFT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 354, pp. 4:1-4:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{luo_et_al:LIPIcs.AFT.2025.4,
  author =	{Luo, Zhongtang and Jia, Yanxue and Shen, Yaobin and Kate, Aniket},
  title =	{{Proxying Is Enough: Security of Proxying in TLS Oracles and AEAD Context Unforgeability}},
  booktitle =	{7th Conference on Advances in Financial Technologies (AFT 2025)},
  pages =	{4:1--4:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-400-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{354},
  editor =	{Avarikioti, Zeta and Christin, Nicolas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AFT.2025.4},
  URN =		{urn:nbn:de:0030-drops-247231},
  doi =		{10.4230/LIPIcs.AFT.2025.4},
  annote =	{Keywords: Oracle, TLS, AEAD, Key Commitment}
}
Document
DOI: 10.4230/LIPIcs.AFT.2025.33
Cuttlefish: A Fair, Predictable Execution Environment for Cloud-Hosted Financial Exchanges

Authors: Liangcheng Yu, Prateesh Goyal, Ilias Marinos, and Vincent Liu

Published in: LIPIcs, Volume 354, 7th Conference on Advances in Financial Technologies (AFT 2025)

Abstract
Recent years have seen a rising interest in cloud-hosted financial exchanges. While the public cloud platforms promise a cost-effective and more accessible option to traders, unfortunately, achieving fairness in cloud environments is challenging due to non-deterministic network latencies and execution times. This work presents Cuttlefish, a fair-by-design cloud execution environment for algorithmic trading. The idea behind Cuttlefish is the efficient and robust mapping of real operations to a novel formulation of "virtual time". With it, Cuttlefish abstracts out the variances of the underlying network communication and computation hardware. Our implementation and evaluation not only validate the practicality of Cuttlefish, but also show its operational efficiency on public cloud platforms.
Cite as

Liangcheng Yu, Prateesh Goyal, Ilias Marinos, and Vincent Liu. Cuttlefish: A Fair, Predictable Execution Environment for Cloud-Hosted Financial Exchanges. In 7th Conference on Advances in Financial Technologies (AFT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 354, pp. 33:1-33:25, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{yu_et_al:LIPIcs.AFT.2025.33,
  author =	{Yu, Liangcheng and Goyal, Prateesh and Marinos, Ilias and Liu, Vincent},
  title =	{{Cuttlefish: A Fair, Predictable Execution Environment for Cloud-Hosted Financial Exchanges}},
  booktitle =	{7th Conference on Advances in Financial Technologies (AFT 2025)},
  pages =	{33:1--33:25},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-400-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{354},
  editor =	{Avarikioti, Zeta and Christin, Nicolas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AFT.2025.33},
  URN =		{urn:nbn:de:0030-drops-247521},
  doi =		{10.4230/LIPIcs.AFT.2025.33},
  annote =	{Keywords: Cloud-hosted exchanges, Financial exchanges, Computation and communication variances, Virtual time overlay}
}
Document
DOI: 10.4230/LIPIcs.ITP.2025.23
Formalizing the Hidden Number Problem in Isabelle/HOL

Authors: Sage Binder, Eric Ren, and Katherine Kosaian

Published in: LIPIcs, Volume 352, 16th International Conference on Interactive Theorem Proving (ITP 2025)

Abstract
We formalize the hidden number problem (HNP), as introduced in a seminal work by Boneh and Venkatesan in 1996, in Isabelle/HOL. Intuitively, the HNP involves demonstrating the existence of an algorithm (the "adversary") which can compute (with high probability) a hidden number α given access to a bit-leaking oracle. Originally developed to establish the security of Diffie-Hellman key exchange, the HNP has since been used not only for protocol security but also in cryptographic attacks, including notable ones on DSA and ECDSA. Further, as the HNP establishes an expressive paradigm for reasoning about security in the context of information leakage, many HNP variants for other specialized cryptographic applications have since been developed. A main contribution of our work is explicating and clarifying the HNP proof blueprint from the original source material; naturally, formalization forces us to make all assumptions and proof steps precise and transparent. For example, the source material did not explicitly define the adversary and only abstractly defined what information is being leaked; our formalization concretizes both definitions. Additionally, the HNP makes use of an instance of Babai’s nearest plane algorithm, which solves the approximate closest vector problem; we formalize this as a result of independent interest. Our formalizations of Babai’s algorithm and the HNP adversary are executable, setting up potential future work, e.g. in developing formally verified instances of cryptographic attacks.
Cite as

Sage Binder, Eric Ren, and Katherine Kosaian. Formalizing the Hidden Number Problem in Isabelle/HOL. In 16th International Conference on Interactive Theorem Proving (ITP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 352, pp. 23:1-23:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{binder_et_al:LIPIcs.ITP.2025.23,
  author =	{Binder, Sage and Ren, Eric and Kosaian, Katherine},
  title =	{{Formalizing the Hidden Number Problem in Isabelle/HOL}},
  booktitle =	{16th International Conference on Interactive Theorem Proving (ITP 2025)},
  pages =	{23:1--23:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-396-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{352},
  editor =	{Forster, Yannick and Keller, Chantal},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2025.23},
  URN =		{urn:nbn:de:0030-drops-246216},
  doi =		{10.4230/LIPIcs.ITP.2025.23},
  annote =	{Keywords: hidden number problem, Babai’s nearest plane algorithm, cryptography, interactive theorem proving, Isabelle/HOL}
}
Document
DOI: 10.4230/OASIcs.Programming.2025.6
Exploration and Complexity Management in Graph-Based Programming Environments

Authors: Max Boksem and L. Thomas van Binsbergen

Published in: OASIcs, Volume 134, Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025)

Abstract
Programmers often rely on different environments depending on the nature of their tasks. For large-scale software projects, IDEs help manage complexity through structured abstractions like files, modules, and classes, and provide tools for code visualization and navigation. In contrast, exploratory programming tasks - such as data analysis, rapid prototyping, and design space exploration - are better served by interactive environments like REPLs and Notebooks, which support incremental development and immediate feedback. However, these tools tend to prioritize either complexity management or exploration, limiting their effectiveness across contexts. This paper investigates a hybrid graph-based programming environment that bridges these two modes by building on Incremental Graph Code (IGC), a graph-based system for structuring, visualizing, and interacting with source code. We explore how IGC can support both complexity management and exploratory programming through three key features: projectional views for aggregating and navigating interrelated code and documentation, graph-type nodes for encapsulating subgraphs to manage structural complexity, and an exploratory programming view for managing branching executions and promoting experimentation. Together, these features suggest that graph-based environments like IGC can offer a unified platform for both systematic software engineering and dynamic, exploratory development.
Cite as

Max Boksem and L. Thomas van Binsbergen. Exploration and Complexity Management in Graph-Based Programming Environments. In Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025). Open Access Series in Informatics (OASIcs), Volume 134, pp. 6:1-6:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{boksem_et_al:OASIcs.Programming.2025.6,
  author =	{Boksem, Max and van Binsbergen, L. Thomas},
  title =	{{Exploration and Complexity Management in Graph-Based Programming Environments}},
  booktitle =	{Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025)},
  pages =	{6:1--6:18},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-382-9},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{134},
  editor =	{Edwards, Jonathan and Perera, Roly and Petricek, Tomas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Programming.2025.6},
  URN =		{urn:nbn:de:0030-drops-242906},
  doi =		{10.4230/OASIcs.Programming.2025.6},
  annote =	{Keywords: Graph-based Programming Environments, Exploratory Programming, Complexity Management, Incremental Graph Code (IGC), Projectional Views}
}
Document
DOI: 10.4230/LIPIcs.TQC.2025.9
Efficient Quantum Pseudorandomness from Hamiltonian Phase States

Authors: John Bostanci, Jonas Haferkamp, Dominik Hangleiter, and Alexander Poremba

Published in: LIPIcs, Volume 350, 20th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2025)

Abstract
Quantum pseudorandomness has found applications in many areas of quantum information, ranging from entanglement theory, to models of scrambling phenomena in chaotic quantum systems, and, more recently, in the foundations of quantum cryptography. Kretschmer (TQC '21) showed that both pseudorandom states and pseudorandom unitaries exist even in a world without classical one-way functions. To this day, however, all known constructions require classical cryptographic building blocks which are themselves synonymous with the existence of one-way functions, and which are also challenging to implement on realistic quantum hardware. In this work, we seek to make progress on both of these fronts simultaneously - by decoupling quantum pseudorandomness from classical cryptography altogether. We introduce a quantum hardness assumption called the Hamiltonian Phase State (HPS) problem, which is the task of decoding output states of a random instantaneous quantum polynomial-time (IQP) circuit. Hamiltonian phase states can be generated very efficiently using only Hadamard gates, single-qubit Z rotations and CNOT circuits. We show that the hardness of our problem reduces to a worst-case version of the problem, and we provide evidence that our assumption is plausibly fully quantum; meaning, it cannot be used to construct one-way functions. We also show information-theoretic hardness when only few copies of HPS are available by proving an approximate t-design property of our ensemble. Finally, we show that our HPS assumption and its variants allow us to efficiently construct many pseudorandom quantum primitives, ranging from pseudorandom states, to quantum pseudoentanglement, to pseudorandom unitaries, and even primitives such as public-key encryption with quantum keys.
Cite as

John Bostanci, Jonas Haferkamp, Dominik Hangleiter, and Alexander Poremba. Efficient Quantum Pseudorandomness from Hamiltonian Phase States. In 20th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 350, pp. 9:1-9:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bostanci_et_al:LIPIcs.TQC.2025.9,
  author =	{Bostanci, John and Haferkamp, Jonas and Hangleiter, Dominik and Poremba, Alexander},
  title =	{{Efficient Quantum Pseudorandomness from Hamiltonian Phase States}},
  booktitle =	{20th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2025)},
  pages =	{9:1--9:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-392-8},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{350},
  editor =	{Fefferman, Bill},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.TQC.2025.9},
  URN =		{urn:nbn:de:0030-drops-240586},
  doi =		{10.4230/LIPIcs.TQC.2025.9},
  annote =	{Keywords: Quantum pseudorandomness, quantum phase states, quantum cryptography}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.22
Design of Worst-Case-Optimal Spaced Seeds

Authors: Jens Zentgraf and Sven Rahmann

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Read mapping (and alignment) is a fundamental problem in biological sequence analysis. For speed and computational efficiency, many popular read mappers tolerate only a few differences between the read and the corresponding part of the reference genome, which leads to reference bias: Reads with too many differences are not guaranteed to be mapped correctly or at all, because to even consider a genomic position, a sufficiently long exact match (seed) must exist. While pangenomes and their graph-based representations provide one way to avoid reference bias by enlarging the reference, we explore an orthogonal approach and consider stronger substitution-tolerant primitives, namely spaced seeds or gapped k-mers. Given two integers k ≤ w, one considers k selected positions, described by a mask, from each length-w window in a sequence. In the existing literature, masks with certain probabilistic guarantees have been designed for small values of k. Here, for the first time, we take a combinatorial approach from a worst-case perspective. For any mask, using integer linear programs, we find least favorable distributions of sequence changes in two different senses: (1) minimizing the number of unchanged windows; (2) minimizing the number of positions covered by unchanged windows. Then, among all masks or all symmetric masks of a given shape (k,w), we find the set of best masks that maximize these minima. As a result, we obtain robust masks, even for large numbers of changes. We illustrate the properties of these masks by constructing a challenging set of reads that contain many approximately equidistributed substitutions (but no indels) that many existing tools cannot map, even though they are in principle easily mappable (apart from the large number of changes) because they originate from selected non-repetitive regions of the human reference genome. We observe that the majority of these reads can be mapped with a simple alignment-free approach using chosen spaced masks, where seeding approaches based on contiguous k-mers fail.
Cite as

Jens Zentgraf and Sven Rahmann. Design of Worst-Case-Optimal Spaced Seeds. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 22:1-22:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{zentgraf_et_al:LIPIcs.WABI.2025.22,
  author =	{Zentgraf, Jens and Rahmann, Sven},
  title =	{{Design of Worst-Case-Optimal Spaced Seeds}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{22:1--22:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.22},
  URN =		{urn:nbn:de:0030-drops-239488},
  doi =		{10.4230/LIPIcs.WABI.2025.22},
  annote =	{Keywords: Spaced seed, Gapped k-mer, Integer linear program (ILP), Worst-case design, Reference bias}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.10
DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs

Authors: Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Determining the distance between two loci within a genomic region is a recurrent operation in various tasks in computational genomics. A notable example of this task arises in paired-end read mapping as a form of validation of distances between multiple alignments. While straightforward for a single genome, graph-based reference structures render the operation considerably more involved. Given the sheer number of such queries in a typical read mapping experiment, an efficient algorithm for answering distance queries is crucial. In this paper, we introduce DiVerG, a compact data structure as well as a fast and scalable algorithm, for constructing distance indexes for general sequence graphs on multi-core CPU and many-core GPU architectures. DiVerG is based on PairG [Jain et al., 2019], but overcomes the limitations of PairG by exploiting the extensive potential for improvements in terms of scalability and space efficiency. As a consequence, DiVerG can process substantially larger datasets, such as whole human genomes, which are unmanageable by PairG. DiVerG offers faster index construction time and consistently faster query time with gains proportional to the size of the underlying compact data structure. We demonstrate that our method performs favorably on multiple real datasets at various scales. DiVerG achieves superior performance over PairG; e.g. resulting to 2.5-4x speed-up in query time, 44-340x smaller index size, and 3-50x faster construction time for the genome graph of the MHC region, as a particularly variable region of the human genome. The implementation is available at: https://github.com/cartoonist/diverg
Cite as

Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall. DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 10:1-10:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ghaffaari_et_al:LIPIcs.WABI.2025.10,
  author =	{Ghaffaari, Ali and Sch\"{o}nhuth, Alexander and Marschall, Tobias},
  title =	{{DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{10:1--10:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.10},
  URN =		{urn:nbn:de:0030-drops-239369},
  doi =		{10.4230/LIPIcs.WABI.2025.10},
  annote =	{Keywords: Sequence graph, distance index, read mapping, sparse matrix}
}
Document
Research
DOI: 10.4230/OASIcs.Grossi.20
Subsequence-Based Indices for Genome Sequence Analysis

Authors: Giovanni Buzzega, Alessio Conte, Veronica Guerrini, Giulia Punzi, Giovanna Rosone, and Lorenzo Tattini

Published in: OASIcs, Volume 132, From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday (2025)

Abstract
Compact indices are a fundamental tool in string analysis, even more so in bioinformatics, where genomic sequences can reach billions in length. This paper presents some recent results in which Roberto Grossi has been involved, showing how some of these indices do more than just efficiently represent data, but rather are able to bring out salient information within it, which can be exploited for their downstream analysis. Specifically, we first review a recently-introduced method [Guerrini et al., 2023] that employs the Burrows-Wheeler Transform to build reasonably accurate phylogenetic trees in an assembly-free scenario. We then describe a recent practical tool [Buzzega et al., 2025] for indexing Maximal Common Subsequences between strings, which can enable analysis of genomic sequence similarity. Experimentally, we show that the results produced by the one index are consistent with the expectations about the results of the other index.
Cite as

Giovanni Buzzega, Alessio Conte, Veronica Guerrini, Giulia Punzi, Giovanna Rosone, and Lorenzo Tattini. Subsequence-Based Indices for Genome Sequence Analysis. In From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 132, pp. 20:1-20:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{buzzega_et_al:OASIcs.Grossi.20,
  author =	{Buzzega, Giovanni and Conte, Alessio and Guerrini, Veronica and Punzi, Giulia and Rosone, Giovanna and Tattini, Lorenzo},
  title =	{{Subsequence-Based Indices for Genome Sequence Analysis}},
  booktitle =	{From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday},
  pages =	{20:1--20:21},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-391-1},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{132},
  editor =	{Conte, Alessio and Marino, Andrea and Rosone, Giovanna and Vitter, Jeffrey Scott},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Grossi.20},
  URN =		{urn:nbn:de:0030-drops-238199},
  doi =		{10.4230/OASIcs.Grossi.20},
  annote =	{Keywords: String Indices, Burrows-Wheeler Transform, Maximal Common Subsequences, Sequence Analysis, Phylogeny}
}
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