170 Search Results for "Liu, Yu"

Document
Survey
DOI: 10.4230/TGDK.3.2.1
Resilience in Knowledge Graph Embeddings

Authors: Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo

Published in: TGDK, Volume 3, Issue 2 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 2

Abstract
In recent years, knowledge graphs have gained interest and witnessed widespread applications in various domains, such as information retrieval, question-answering, recommendation systems, amongst others. Large-scale knowledge graphs to this end have demonstrated their utility in effectively representing structured knowledge. To further facilitate the application of machine learning techniques, knowledge graph embedding models have been developed. Such models can transform entities and relationships within knowledge graphs into vectors. However, these embedding models often face challenges related to noise, missing information, distribution shift, adversarial attacks, etc. This can lead to sub-optimal embeddings and incorrect inferences, thereby negatively impacting downstream applications. While the existing literature has focused so far on adversarial attacks on KGE models, the challenges related to the other critical aspects remain unexplored. In this paper, we, first of all, give a unified definition of resilience, encompassing several factors such as generalisation, in-distribution generalization, distribution adaption, and robustness. After formalizing these concepts for machine learning in general, we define them in the context of knowledge graphs. To find the gap in the existing works on resilience in the context of knowledge graphs, we perform a systematic survey, taking into account all these aspects mentioned previously. Our survey results show that most of the existing works focus on a specific aspect of resilience, namely robustness. After categorizing such works based on their respective aspects of resilience, we discuss the challenges and future research directions.
Cite as

Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo. Resilience in Knowledge Graph Embeddings. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 2, pp. 1:1-1:38, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{sharma_et_al:TGDK.3.2.1,
  author =	{Sharma, Arnab and Kouagou, N'Dah Jean and Ngomo, Axel-Cyrille Ngonga},
  title =	{{Resilience in Knowledge Graph Embeddings}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{1:1--1:38},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.2.1},
  URN =		{urn:nbn:de:0030-drops-248117},
  doi =		{10.4230/TGDK.3.2.1},
  annote =	{Keywords: Knowledge graphs, Resilience, Robustness}
}
Document
Research
DOI: 10.4230/TGDK.3.2.3
GraphRAG on Technical Documents - Impact of Knowledge Graph Schema

Authors: Henri Scaffidi, Melinda Hodkiewicz, Caitlin Woods, and Nicole Roocke

Published in: TGDK, Volume 3, Issue 2 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 2

Abstract
Retrieval Augmented Generation (RAG) is seeing rapid adoption in industry to enable employees to query information captured in proprietary data for their organisation. In this work, we test the impact of domain-relevant knowledge graph schemas on the results of Microsoft’s GraphRAG pipeline. Our approach aims to address the poor quality of GraphRAG responses on technical reports rich in domain-specific terms. The use case involves technical reports about geology, chemistry and mineral processing published by the Minerals Research Institute of Western Australia (MRIWA). Four schemas are considered: a simple five-class minerals domain expert-developed schema, an expanded minerals domain schema, the Microsoft GraphRAG auto-generated schema, and a schema-less GraphRAG. These are compared to a conventional baseline RAG. Performance is evaluated using a scoring approach that accounts for the mix of correct, incorrect, additional, and missing content in RAG responses. The results show that the simple five-class minerals domain schema extracts approximately 10% more entities from the MRIWA reports than the other schema options. Additionally, both the five-class and the expanded eight-class minerals domain schemas produce the most factually correct answers and the fewest hallucinations. We attribute this to the minerals-specific schemas extracting more relevant, domain-specific information during the Indexing stage. As a result, the Query stage’s context window includes more high-value content. This contributes to the observed improvement in answer quality compared to the other pipelines. In contrast, pipelines with fewer domain-related entities in the KG retrieve less valuable information, leaving more room for irrelevant content in the context window. Baseline RAG responses were typically shorter, less complete, and contained more hallucinations compared to our GraphRAG pipelines. We provide a complete set of resources at https://github.com/nlp-tlp/GraphRAG-on-Minerals-Domain/tree/main. These resources include links to the MRIWA reports, a set of questions (from simple to challenging) along with domain-expert curated answers, schemas, and evaluations of the pipelines.
Cite as

Henri Scaffidi, Melinda Hodkiewicz, Caitlin Woods, and Nicole Roocke. GraphRAG on Technical Documents - Impact of Knowledge Graph Schema. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 2, pp. 3:1-3:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{scaffidi_et_al:TGDK.3.2.3,
  author =	{Scaffidi, Henri and Hodkiewicz, Melinda and Woods, Caitlin and Roocke, Nicole},
  title =	{{GraphRAG on Technical Documents - Impact of Knowledge Graph Schema}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{3:1--3:24},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.2.3},
  URN =		{urn:nbn:de:0030-drops-248131},
  doi =		{10.4230/TGDK.3.2.3},
  annote =	{Keywords: RAG, minerals, local search, global search, entity extraction, competency questions}
}
Document
DOI: 10.4230/LIPIcs.AFT.2025.33
Cuttlefish: A Fair, Predictable Execution Environment for Cloud-Hosted Financial Exchanges

Authors: Liangcheng Yu, Prateesh Goyal, Ilias Marinos, and Vincent Liu

Published in: LIPIcs, Volume 354, 7th Conference on Advances in Financial Technologies (AFT 2025)

Abstract
Recent years have seen a rising interest in cloud-hosted financial exchanges. While the public cloud platforms promise a cost-effective and more accessible option to traders, unfortunately, achieving fairness in cloud environments is challenging due to non-deterministic network latencies and execution times. This work presents Cuttlefish, a fair-by-design cloud execution environment for algorithmic trading. The idea behind Cuttlefish is the efficient and robust mapping of real operations to a novel formulation of "virtual time". With it, Cuttlefish abstracts out the variances of the underlying network communication and computation hardware. Our implementation and evaluation not only validate the practicality of Cuttlefish, but also show its operational efficiency on public cloud platforms.
Cite as

Liangcheng Yu, Prateesh Goyal, Ilias Marinos, and Vincent Liu. Cuttlefish: A Fair, Predictable Execution Environment for Cloud-Hosted Financial Exchanges. In 7th Conference on Advances in Financial Technologies (AFT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 354, pp. 33:1-33:25, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{yu_et_al:LIPIcs.AFT.2025.33,
  author =	{Yu, Liangcheng and Goyal, Prateesh and Marinos, Ilias and Liu, Vincent},
  title =	{{Cuttlefish: A Fair, Predictable Execution Environment for Cloud-Hosted Financial Exchanges}},
  booktitle =	{7th Conference on Advances in Financial Technologies (AFT 2025)},
  pages =	{33:1--33:25},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-400-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{354},
  editor =	{Avarikioti, Zeta and Christin, Nicolas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AFT.2025.33},
  URN =		{urn:nbn:de:0030-drops-247521},
  doi =		{10.4230/LIPIcs.AFT.2025.33},
  annote =	{Keywords: Cloud-hosted exchanges, Financial exchanges, Computation and communication variances, Virtual time overlay}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.54
Non-Boolean OMv: One More Reason to Believe Lower Bounds for Dynamic Problems

Authors: Bingbing Hu and Adam Polak

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Most of the known tight lower bounds for dynamic problems are based on the Online Boolean Matrix-Vector Multiplication (OMv) Hypothesis, which is not as well studied and understood as some more popular hypotheses in fine-grained complexity. It would be desirable to base hardness of dynamic problems on a more believable hypothesis. We propose analogues of the OMv Hypothesis for variants of matrix multiplication that are known to be harder than Boolean product in the offline setting, namely: equality, dominance, min-witness, min-max, and bounded monotone min-plus products. These hypotheses are a priori weaker assumptions than the standard (Boolean) OMv Hypothesis and yet we show that they are actually equivalent to it. This establishes the first such fine-grained equivalence class for dynamic problems.
Cite as

Bingbing Hu and Adam Polak. Non-Boolean OMv: One More Reason to Believe Lower Bounds for Dynamic Problems. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 54:1-54:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{hu_et_al:LIPIcs.ESA.2025.54,
  author =	{Hu, Bingbing and Polak, Adam},
  title =	{{Non-Boolean OMv: One More Reason to Believe Lower Bounds for Dynamic Problems}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{54:1--54:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.54},
  URN =		{urn:nbn:de:0030-drops-245228},
  doi =		{10.4230/LIPIcs.ESA.2025.54},
  annote =	{Keywords: Fine-grained complexity, OMv hypothesis, reductions, equivalence class}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.55
Safe Sequences via Dominators in DAGs for Path-Covering Problems

Authors: Francisco Sena, Romeo Rizzi, and Alexandru I. Tomescu

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
A path-covering problem on a directed acyclic graph (DAG) requires finding a set of source-to-sink paths that cover all the nodes, all the arcs, or subsets thereof, and additionally they are optimal with respect to some function. In this paper we study safe sequences of nodes or arcs, namely sequences that appear in some path of every path cover of a DAG. We show that safe sequences admit a simple characterization via cutnodes. Moreover, we establish a connection between maximal safe sequences and leaf-to-root paths in the source- and sink-dominator trees of the DAG, which may be of independent interest in the extensive literature on dominators. With dominator trees, safe sequences admit an O(n)-size representation and a linear-time output-sensitive enumeration algorithm running in time O(m + o), where n and m are the number of nodes and arcs, respectively, and o is the total length of the maximal safe sequences. We then apply maximal safe sequences to simplify Integer Linear Programs (ILPs) for two path-covering problems, LeastSquares and MinPathError, which are at the core of RNA transcript assembly problems from bioinformatics. On various datasets, maximal safe sequences can be computed in under 0.1 seconds per graph, on average, and ILP solvers whose search space is reduced in this manner exhibit significant speed-ups. For example on graphs with a large width, average speed-ups are in the range 50-250× for MinPathError and in the range 80-350× for LeastSquares. Optimizing ILPs using safe sequences can thus become a fast building block of practical RNA transcript assembly tools, and more generally, of path-covering problems.
Cite as

Francisco Sena, Romeo Rizzi, and Alexandru I. Tomescu. Safe Sequences via Dominators in DAGs for Path-Covering Problems. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 55:1-55:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{sena_et_al:LIPIcs.ESA.2025.55,
  author =	{Sena, Francisco and Rizzi, Romeo and Tomescu, Alexandru I.},
  title =	{{Safe Sequences via Dominators in DAGs for Path-Covering Problems}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{55:1--55:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.55},
  URN =		{urn:nbn:de:0030-drops-245230},
  doi =		{10.4230/LIPIcs.ESA.2025.55},
  annote =	{Keywords: directed acyclic graph, path cover, dominator tree, integer linear programming, least squares, minimum path error}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.51
Quantum Approximate k-Minimum Finding

Authors: Minbo Gao, Zhengfeng Ji, and Qisheng Wang

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Quantum k-minimum finding is a fundamental subroutine with numerous applications in combinatorial problems and machine learning. Previous approaches typically assume oracle access to exact function values, making it challenging to integrate this subroutine with other quantum algorithms. In this paper, we propose an (almost) optimal quantum k-minimum finding algorithm that works with approximate values for all k ≥ 1, extending a result of van Apeldoorn, Gilyén, Gribling, and de Wolf (FOCS 2017) for k = 1. As practical applications, we present efficient quantum algorithms for identifying the k smallest expectation values among multiple observables and for determining the k lowest ground state energies of a Hamiltonian with a known eigenbasis.
Cite as

Minbo Gao, Zhengfeng Ji, and Qisheng Wang. Quantum Approximate k-Minimum Finding. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 51:1-51:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gao_et_al:LIPIcs.ESA.2025.51,
  author =	{Gao, Minbo and Ji, Zhengfeng and Wang, Qisheng},
  title =	{{Quantum Approximate k-Minimum Finding}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{51:1--51:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.51},
  URN =		{urn:nbn:de:0030-drops-245192},
  doi =		{10.4230/LIPIcs.ESA.2025.51},
  annote =	{Keywords: Quantum Computing, Quantum Algorithms, Quantum Minimum Finding}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.24
Fréchet Distance in Unweighted Planar Graphs

Authors: Ivor van der Hoog, Thijs van der Horst, Eva Rotenberg, and Lasse Wulf

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
The Fréchet distance is a distance measure between trajectories in ℝ^d or walks in a graph G. Given constant-time shortest path queries, the Discrete Fréchet distance D_G(P, Q) between two walks P and Q can be computed in O(|P|⋅|Q|) time using a dynamic program. Driemel, van der Hoog, and Rotenberg [SoCG'22] show that for weighted planar graphs this approach is likely tight, as there can be no strongly-subquadratic algorithm to compute a 1.01-approximation of D_G(P, Q) unless the Orthogonal Vector Hypothesis (OVH) fails. Such quadratic-time conditional lower bounds are common to many Fréchet distance variants. However, they can be circumvented by assuming that the input comes from some well-behaved class: There exist (1+ε)-approximations, both in weighted graphs and in ℝ^d, that take near-linear time for c-packed or κ-straight walks in the graph. In ℝ^d there also exists a near-linear time algorithm to compute the Fréchet distance whenever all input edges are long compared to the distance. We consider computing the Fréchet distance in unweighted planar graphs. We show that there exist no strongly-subquadratic 1.25-approximations of the discrete Fréchet distance between two disjoint simple paths in an unweighted planar graph in strongly subquadratic time, unless OVH fails. This improves the previous lower bound, both in terms of generality and approximation factor. We subsequently show that adding graph structure circumvents this lower bound: If the graph is a regular tiling with unit-weighted edges, then there exists an Õ((|P|+|Q|)^{1.5})-time algorithm to compute D_G(P, Q). Our result has natural implications in the plane, as it allows us to define a new class of well-behaved curves that facilitate (1+ε)-approximations of their discrete Fréchet distance in subquadratic time.
Cite as

Ivor van der Hoog, Thijs van der Horst, Eva Rotenberg, and Lasse Wulf. Fréchet Distance in Unweighted Planar Graphs. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 24:1-24:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{vanderhoog_et_al:LIPIcs.ESA.2025.24,
  author =	{van der Hoog, Ivor and van der Horst, Thijs and Rotenberg, Eva and Wulf, Lasse},
  title =	{{Fr\'{e}chet Distance in Unweighted Planar Graphs}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{24:1--24:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.24},
  URN =		{urn:nbn:de:0030-drops-244924},
  doi =		{10.4230/LIPIcs.ESA.2025.24},
  annote =	{Keywords: Fr\'{e}chet distance, planar graphs, lower bounds, approximation algorithms}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.73
Classical Algorithms for Constant Approximation of the Ground State Energy of Local Hamiltonians

Authors: François Le Gall

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
We construct classical algorithms computing an approximation of the ground state energy of an arbitrary k-local Hamiltonian acting on n qubits. We first consider the setting where a good "guiding state" is available, which is the main setting where quantum algorithms are expected to achieve an exponential speedup over classical methods. We show that a constant approximation (i.e., an approximation with constant relative accuracy) of the ground state energy can be computed classically in poly (1/χ,n) time and poly(n) space, where χ denotes the overlap between the guiding state and the ground state (as in prior works in dequantization, we assume sample-and-query access to the guiding state). This gives a significant improvement over the recent classical algorithm by Gharibian and Le Gall (SICOMP 2023), and matches (up to a polynomial overhead) both the time and space complexities of quantum algorithms for constant approximation of the ground state energy. We also obtain classical algorithms for higher-precision approximation. For the setting where no guided state is given (i.e., the standard version of the local Hamiltonian problem), we obtain a classical algorithm computing a constant approximation of the ground state energy in 2^O(n) time and poly(n) space. To our knowledge, before this work it was unknown how to classically achieve these bounds simultaneously, even for constant approximation. We also discuss complexity-theoretic aspects of our results.
Cite as

François Le Gall. Classical Algorithms for Constant Approximation of the Ground State Energy of Local Hamiltonians. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 73:1-73:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{legall:LIPIcs.ESA.2025.73,
  author =	{Le Gall, Fran\c{c}ois},
  title =	{{Classical Algorithms for Constant Approximation of the Ground State Energy of Local Hamiltonians}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{73:1--73:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.73},
  URN =		{urn:nbn:de:0030-drops-245419},
  doi =		{10.4230/LIPIcs.ESA.2025.73},
  annote =	{Keywords: approximation algorithms, quantum computing, dequantization}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.18
Efficiency of Learned Indexes on Genome Spectra

Authors: Md. Hasin Abrar, Paul Medvedev, and Giorgio Vinciguerra

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Data structures on a multiset of genomic k-mers are at the heart of many bioinformatic tools. As genomic datasets grow in scale, the efficiency of these data structures increasingly depends on how well they leverage the inherent patterns in the data. One recent and effective approach is the use of learned indexes that approximate the rank function of a multiset using a piecewise linear function with very few segments. However, theoretical worst-case analysis struggles to predict the practical performance of these indexes. We address this limitation by developing a novel measure of piecewise-linear approximability of the data, called CaPLa (Canonical Piecewise Linear approximability). CaPLa builds on the empirical observation that a power-law model often serves as a reasonable proxy for piecewise linear-approximability, while explicitly accounting for deviations from a true power-law fit. We prove basic properties of CaPLa and present an efficient algorithm to compute it. We then demonstrate that CaPLa can accurately predict space bounds for data structures on real data. Empirically, we analyze over 500 genomes through the lens of CaPLa, revealing that it varies widely across the tree of life and even within individual genomes. Finally, we study the robustness of CaPLa as a measure and the factors that make genomic k-mer multisets different from random ones.
Cite as

Md. Hasin Abrar, Paul Medvedev, and Giorgio Vinciguerra. Efficiency of Learned Indexes on Genome Spectra. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 18:1-18:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{abrar_et_al:LIPIcs.ESA.2025.18,
  author =	{Abrar, Md. Hasin and Medvedev, Paul and Vinciguerra, Giorgio},
  title =	{{Efficiency of Learned Indexes on Genome Spectra}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{18:1--18:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.18},
  URN =		{urn:nbn:de:0030-drops-244865},
  doi =		{10.4230/LIPIcs.ESA.2025.18},
  annote =	{Keywords: Genome spectra, piecewise linear approximation, learned index, k-mers}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.68
Faster Algorithm for Second (s,t)-Mincut and Breaking Quadratic Barrier for Dual Edge Sensitivity for (s,t)-Mincut

Authors: Surender Baswana, Koustav Bhanja, and Anupam Roy

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Let G be a directed graph on n vertices and m edges. In this article, we study (s,t)-cuts of second minimum capacity and present the following algorithmic and graph-theoretic results. 1) Second (s,t)-mincut: Vazirani and Yannakakis [ICALP 1992] designed the first algorithm for computing an (s,t)-cut of second minimum capacity using {O}(n²) maximum (s,t)-flow computations. We present the following algorithm that improves the running time significantly. For directed integer-weighted graphs, there is an algorithm that can compute an (s,t)-cut of second minimum capacity using Õ(√n) maximum (s,t)-flow computations with high probability. To achieve this result, a close relationship of independent interest is established between (s,t)-cuts of second minimum capacity and global mincuts in directed weighted graphs. 2) Minimum+1 (s,t)-cuts: Minimum+1 (s,t)-cuts have been studied quite well recently [Baswana, Bhanja, and Pandey, ICALP 2022 & TALG 2023], which is a special case of second (s,t)-mincut. We present the following structural result and the first nontrivial algorithm for minimum+1 (s,t)-cuts. 3) Algorithm: For directed multi-graphs, we design an algorithm that, given any maximum (s,t)-flow, computes a minimum+1 (s,t)-cut, if it exists, in O(m) time. 4) Structure: The existing structures for storing and characterizing all minimum+1 (s,t)-cuts occupy {O}(mn) space [Baswana, Bhanja, and Pandey, TALG 2023]. For undirected multi-graphs, we design a directed acyclic graph (DAG) occupying only {O}(m) space that stores and characterizes all minimum+1 (s,t)-cuts. This matches the space bound of the widely-known DAG structure for all (s,t)-mincuts [Picard and Queyranne, Math. Prog. Studies 1980]. 5) Dual Edge Sensitivity Oracle: The study of minimum+1 (s,t)-cuts often turns out to be useful in designing dual edge sensitivity oracles - a compact data structure for efficiently reporting an (s,t)-mincut after insertion/failure of any given pair of query edges. It has been shown recently [Bhanja, ICALP 2025] that any dual edge sensitivity oracle for (s,t)-mincut in undirected multi-graphs must occupy Ω(n²) space in the worst-case irrespective of the query time. Interestingly, for undirected unweighted simple graphs, we break this quadratic barrier while achieving a non-trivial query time as follows. There is an O(n√n) space data structure that can report an (s,t)-mincut in O(min{m,n√n}) time after the insertion/failure of any given pair of query edges. To arrive at our results, as one of our key techniques, we establish interesting relationships between (s,t)-cuts of capacity (minimum+Δ), Δ ≥ 0, and maximum (s,t)-flow. We believe that these techniques and the graph-theoretic result in 2.(b) are of independent interest.
Cite as

Surender Baswana, Koustav Bhanja, and Anupam Roy. Faster Algorithm for Second (s,t)-Mincut and Breaking Quadratic Barrier for Dual Edge Sensitivity for (s,t)-Mincut. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 68:1-68:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{baswana_et_al:LIPIcs.ESA.2025.68,
  author =	{Baswana, Surender and Bhanja, Koustav and Roy, Anupam},
  title =	{{Faster Algorithm for Second (s,t)-Mincut and Breaking Quadratic Barrier for Dual Edge Sensitivity for (s,t)-Mincut}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{68:1--68:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.68},
  URN =		{urn:nbn:de:0030-drops-245369},
  doi =		{10.4230/LIPIcs.ESA.2025.68},
  annote =	{Keywords: mincut, second mincut, compact structure, fault tolerant, sensitivity oracle, dual edges, st mincut, global mincut, characterization}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.64
A Dynamic Piecewise-Linear Geometric Index with Worst-Case Guarantees

Authors: Emil Toftegaard Gæde, Ivor van der Hoog, Eva Rotenberg, and Tord Stordalen

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Indexing data is a fundamental problem in computer science. The input is a set S of n distinct integers from a universe 𝒰. Indexing queries take a value q ∈ 𝒰 and return the membership, predecessor or rank of q in S. A range query takes two values q, r ∈ 𝒰 and returns the set S ∩ [q,r]. Recently, various papers study a special case where the the input data behaves in an approximately piece-wise linear way. Given the sorted (rank,value) pairs, and given some constant ε, one wants to maintain a small number of axis-disjoint line-segments such that, for each rank, the value is within ± ε of the corresponding line-segment. Ferragina and Vinciguerra (VLDB 2020) observe that this geometric problem is useful for solving indexing problems, particularly when the number of line-segments is small compared to the size of the dataset. We study the dynamic version of this geometric problem. In the dynamic setting, inserting or deleting just one data point may cause up to three line-segments to be merged, or one line-segment to be split at most three-way. To determine and compute this, we use techniques from dynamic maintenance of convex hulls, and provide new algorithms with worst-case guarantees, including an O(log n) algorithm to compute a separating line between two non-intersecting convex hulls - an operation previously missing from the literature. We then use our fully-dynamic geometry-based subroutine in an indexing data structure, combining it with a natural hashing technique. The resulting indexing data structure has theoretically efficient worst-case guarantees in expectation. We compare its practical performance to the solution of Ferragina and Vinciguerra, which was shown to perform better in certain structured settings [Sun, Zhou, Li VLDB 2023]. Our empirical analysis shows that our solution supports more efficient range queries in the special case where the update sequence contains many deletions.
Cite as

Emil Toftegaard Gæde, Ivor van der Hoog, Eva Rotenberg, and Tord Stordalen. A Dynamic Piecewise-Linear Geometric Index with Worst-Case Guarantees. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 64:1-64:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gaede_et_al:LIPIcs.ESA.2025.64,
  author =	{G{\ae}de, Emil Toftegaard and van der Hoog, Ivor and Rotenberg, Eva and Stordalen, Tord},
  title =	{{A Dynamic Piecewise-Linear Geometric Index with Worst-Case Guarantees}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{64:1--64:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.64},
  URN =		{urn:nbn:de:0030-drops-245323},
  doi =		{10.4230/LIPIcs.ESA.2025.64},
  annote =	{Keywords: Algorithms Engineering, Data Structures, Indexing, Convex Hulls}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.106
On Estimating the Quantum 𝓁_α Distance

Authors: Yupan Liu and Qisheng Wang

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
We study the computational complexity of estimating the quantum 𝓁_α distance T_α(ρ₀,ρ₁), defined via the Schatten α-norm ‖A‖_α := tr(|A|^α)^{1/α}, given poly(n)-size state-preparation circuits of n-qubit quantum states ρ₀ and ρ₁. This quantity serves as a lower bound on the trace distance for α > 1. For any constant α > 1, we develop an efficient rank-independent quantum estimator for T_α(ρ₀,ρ₁) with time complexity poly(n), achieving an exponential speedup over the prior best results of exp(n) due to Wang, Guan, Liu, Zhang, and Ying (IEEE Trans. Inf. Theory 2024). Our improvement leverages efficiently computable uniform polynomial approximations of signed positive power functions within quantum singular value transformation, thereby eliminating the dependence on the rank of the states. Our quantum algorithm reveals a dichotomy in the computational complexity of the Quantum State Distinguishability Problem with Schatten α-norm (QSD_α), which involves deciding whether T_α(ρ₀,ρ₁) is at least 2/5 or at most 1/5. This dichotomy arises between the cases of constant α > 1 and α = 1: - For any 1+Ω(1) ≤ α ≤ O(1), QSD_α is BQP-complete. - For any 1 ≤ α ≤ 1+1/n, QSD_α is QSZK-complete, implying that no efficient quantum estimator for T_α(ρ₀,ρ₁) exists unless BQP = QSZK. The hardness results follow from reductions based on new rank-dependent inequalities for the quantum 𝓁_α distance with 1 ≤ α ≤ ∞, which are of independent interest.
Cite as

Yupan Liu and Qisheng Wang. On Estimating the Quantum 𝓁_α Distance. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 106:1-106:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{liu_et_al:LIPIcs.ESA.2025.106,
  author =	{Liu, Yupan and Wang, Qisheng},
  title =	{{On Estimating the Quantum 𝓁\underline\alpha Distance}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{106:1--106:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.106},
  URN =		{urn:nbn:de:0030-drops-245758},
  doi =		{10.4230/LIPIcs.ESA.2025.106},
  annote =	{Keywords: quantum algorithms, quantum state testing, trace distance, Schatten norm}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.107
Length-Constrained Directed Expander Decomposition and Length-Constrained Vertex-Capacitated Flow Shortcuts

Authors: Bernhard Haeupler, Yaowei Long, Thatchaphol Saranurak, and Shengzhe Wang

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
We show the existence of length-constrained expander decomposition in directed graphs and undirected vertex-capacitated graphs. Previously, its existence was shown only in undirected edge-capacitated graphs [Bernhard Haeupler et al., 2022; Haeupler et al., 2024]. Along the way, we prove the multi-commodity maxflow-mincut theorems for length-constrained expansion in both directed and undirected vertex-capacitated graphs. Based on our decomposition, we build a length-constrained flow shortcut for undirected vertex-capacitated graphs, which roughly speaking is a set of edges and vertices added to the graph so that every multi-commodity flow demand can be routed with approximately the same vertex-congestion and length, but all flow paths only contain few edges. This generalizes the shortcut for undirected edge-capacitated graphs from [Bernhard Haeupler et al., 2024]. Length-constrained expander decomposition and flow shortcuts have been crucial in the recent algorithms in undirected edge-capacitated graphs [Bernhard Haeupler et al., 2024; Haeupler et al., 2024]. Our work thus serves as a foundation to generalize these concepts to directed and vertex-capacitated graphs.
Cite as

Bernhard Haeupler, Yaowei Long, Thatchaphol Saranurak, and Shengzhe Wang. Length-Constrained Directed Expander Decomposition and Length-Constrained Vertex-Capacitated Flow Shortcuts. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 107:1-107:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{haeupler_et_al:LIPIcs.ESA.2025.107,
  author =	{Haeupler, Bernhard and Long, Yaowei and Saranurak, Thatchaphol and Wang, Shengzhe},
  title =	{{Length-Constrained Directed Expander Decomposition and Length-Constrained Vertex-Capacitated Flow Shortcuts}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{107:1--107:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.107},
  URN =		{urn:nbn:de:0030-drops-245765},
  doi =		{10.4230/LIPIcs.ESA.2025.107},
  annote =	{Keywords: Length-Constrained Expander, Expander Decomposition, Shortcut}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.12
Subtrajectory Clustering and Coverage Maximization in Cubic Time, or Better

Authors: Jacobus Conradi and Anne Driemel

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Many application areas collect unstructured trajectory data. In subtrajectory clustering, one is interested to find patterns in this data using a hybrid combination of segmentation and clustering. We analyze two variants of this problem based on the well-known SetCover and CoverageMaximization problems. In both variants the set system is induced by metric balls under the Fréchet distance centered at polygonal curves. Our algorithms focus on improving the running time of the update step of the generic greedy algorithm by means of a careful combination of sweeps through a candidate space. In the first variant, we are given a polygonal curve P of complexity n, distance threshold Δ and complexity bound 𝓁 and the goal is to identify a minimum-size set of center curves 𝒞, where each center curve is of complexity at most 𝓁 and every point p on P is covered. A point p on P is covered if it is part of a subtrajectory π_p of P such that there is a center c ∈ 𝒞 whose Fréchet distance to π_p is at most Δ. We present an approximation algorithm for this problem with a running time of 𝒪((n²𝓁 + √{k_Δ}n^{5/2})log²n), where k_Δ is the size of an optimal solution. The algorithm gives a bicriterial approximation guarantee that relaxes the Fréchet distance threshold by a constant factor and the size of the solution by a factor of 𝒪(log n). The second problem variant asks for the maximum fraction of the input curve P that can be covered using k center curves, where k ≤ n is a parameter to the algorithm. For the second problem variant, our techniques lead to an algorithm with a running time of 𝒪((k+𝓁)n²log²n) and similar approximation guarantees. Note that in both algorithms k,k_Δ ∈ O(n) and hence the running time is cubic, or better if k ≪ n.
Cite as

Jacobus Conradi and Anne Driemel. Subtrajectory Clustering and Coverage Maximization in Cubic Time, or Better. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 12:1-12:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{conradi_et_al:LIPIcs.ESA.2025.12,
  author =	{Conradi, Jacobus and Driemel, Anne},
  title =	{{Subtrajectory Clustering and Coverage Maximization in Cubic Time, or Better}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{12:1--12:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.12},
  URN =		{urn:nbn:de:0030-drops-244806},
  doi =		{10.4230/LIPIcs.ESA.2025.12},
  annote =	{Keywords: Clustering, Set cover, Fr\'{e}chet distance, Approximation algorithms}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.36
Efficient Contractions of Dynamic Graphs - With Applications

Authors: Monika Henzinger, Evangelos Kosinas, Robin Münk, and Harald Räcke

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
A non-trivial minimum cut (NMC) sparsifier is a multigraph Ĝ that preserves all non-trivial minimum cuts of a given undirected graph G. We introduce a flexible data structure for fully dynamic graphs that can efficiently provide an NMC sparsifier upon request at any point during the sequence of updates. We employ simple dynamic forest data structures to achieve a fast from-scratch construction of the sparsifier at query time. Based on the strength of the adversary and desired type of time bounds, the data structure comes with different guarantees. Specifically, let G be a fully dynamic simple graph with n vertices and minimum degree δ. Then our data structure supports an insertion/deletion of an edge to/from G in n^o(1) worst-case time. Furthermore, upon request, it can return w.h.p. an NMC sparsifier of G that has O(n/δ) vertices and O(n) edges, in Ô(n) time. The probabilistic guarantees hold against an adaptive adversary. Alternatively, the update and query times can be improved to Õ(1) and Õ(n) respectively, if amortized-time guarantees are sufficient, or if the adversary is oblivious. Throughout the paper, we use Õ to hide polylogarithmic factors and Ô to hide subpolynomial (i.e., n^o(1)) factors. We discuss two applications of our new data structure. First, it can be used to efficiently report a cactus representation of all minimum cuts of a fully dynamic simple graph. Building this cactus for the NMC sparsifier instead of the original graph allows for a construction time that is sublinear in the number of edges. Against an adaptive adversary, we can with high probability output the cactus representation in worst-case Ô(n) time. Second, our data structure allows us to efficiently compute the maximal k-edge-connected subgraphs of undirected simple graphs, by repeatedly applying a minimum cut algorithm on the NMC sparsifier. Specifically, we can compute with high probability the maximal k-edge-connected subgraphs of a simple graph with n vertices and m edges in Õ(m+n²/k) time. This improves the best known time bounds for k = Ω(n^{1/8}) and naturally extends to the case of fully dynamic graphs.
Cite as

Monika Henzinger, Evangelos Kosinas, Robin Münk, and Harald Räcke. Efficient Contractions of Dynamic Graphs - With Applications. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 36:1-36:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{henzinger_et_al:LIPIcs.ESA.2025.36,
  author =	{Henzinger, Monika and Kosinas, Evangelos and M\"{u}nk, Robin and R\"{a}cke, Harald},
  title =	{{Efficient Contractions of Dynamic Graphs - With Applications}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{36:1--36:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.36},
  URN =		{urn:nbn:de:0030-drops-245047},
  doi =		{10.4230/LIPIcs.ESA.2025.36},
  annote =	{Keywords: Graph Algorithms, Cut Sparsifiers, Dynamic Algorithms}
}
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