25 Search Results for "Křiv�nek, Milan"

Document
DOI: 10.4230/LIPIcs.ESA.2024.33
Even Faster Knapsack via Rectangular Monotone Min-Plus Convolution and Balancing

Authors: Karl Bringmann, Anita Dürr, and Adam Polak

Published in: LIPIcs, Volume 308, 32nd Annual European Symposium on Algorithms (ESA 2024)

Abstract
We present a pseudopolynomial-time algorithm for the Knapsack problem that has running time Õ(n + t√{p_{max}}), where n is the number of items, t is the knapsack capacity, and p_{max} is the maximum item profit. This improves over the Õ(n + t p_{max})-time algorithm based on the convolution and prediction technique by Bateni et al. (STOC 2018). Moreover, we give some evidence, based on a strengthening of the Min-Plus Convolution Hypothesis, that our running time might be optimal. Our algorithm uses two new technical tools, which might be of independent interest. First, we generalize the Õ(n^{1.5})-time algorithm for bounded monotone min-plus convolution by Chi et al. (STOC 2022) to the rectangular case where the range of entries can be different from the sequence length. Second, we give a reduction from general knapsack instances to balanced instances, where all items have nearly the same profit-to-weight ratio, up to a constant factor. Using these techniques, we can also obtain algorithms that run in time Õ(n + OPT√{w_{max}}), Õ(n + (nw_{max}p_{max})^{1/3}t^{2/3}), and Õ(n + (nw_{max}p_{max})^{1/3} OPT^{2/3}), where OPT is the optimal total profit and w_{max} is the maximum item weight.
Cite as

Karl Bringmann, Anita Dürr, and Adam Polak. Even Faster Knapsack via Rectangular Monotone Min-Plus Convolution and Balancing. In 32nd Annual European Symposium on Algorithms (ESA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 308, pp. 33:1-33:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{bringmann_et_al:LIPIcs.ESA.2024.33,
  author =	{Bringmann, Karl and D\"{u}rr, Anita and Polak, Adam},
  title =	{{Even Faster Knapsack via Rectangular Monotone Min-Plus Convolution and Balancing}},
  booktitle =	{32nd Annual European Symposium on Algorithms (ESA 2024)},
  pages =	{33:1--33:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-338-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{308},
  editor =	{Chan, Timothy and Fischer, Johannes and Iacono, John and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2024.33},
  URN =		{urn:nbn:de:0030-drops-211047},
  doi =		{10.4230/LIPIcs.ESA.2024.33},
  annote =	{Keywords: 0-1-Knapsack problem, bounded monotone min-plus convolution, fine-grained complexity}
}
Document
DOI: 10.4230/LIPIcs.ESA.2024.74
Improved Approximations for Flexible Network Design

Authors: Dylan Hyatt-Denesik, Afrouz Jabal-Ameli, and Laura Sanità

Published in: LIPIcs, Volume 308, 32nd Annual European Symposium on Algorithms (ESA 2024)

Abstract
Flexible network design deals with building a network that guarantees some connectivity requirements between its vertices, even when some of its elements (like vertices or edges) fail. In particular, the set of edges (resp. vertices) of a given graph are here partitioned into safe and unsafe. The goal is to identify a minimum size subgraph that is 2-edge-connected (resp. 2-vertex-connected), and stay so whenever any of the unsafe elements gets removed. In this paper, we provide improved approximation algorithms for flexible network design problems, considering both edge-connectivity and vertex-connectivity, as well as connectivity values higher than 2. For the vertex-connectivity variant, in particular, our algorithm is the first with approximation factor strictly better than 2.
Cite as

Dylan Hyatt-Denesik, Afrouz Jabal-Ameli, and Laura Sanità. Improved Approximations for Flexible Network Design. In 32nd Annual European Symposium on Algorithms (ESA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 308, pp. 74:1-74:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{hyattdenesik_et_al:LIPIcs.ESA.2024.74,
  author =	{Hyatt-Denesik, Dylan and Jabal-Ameli, Afrouz and Sanit\`{a}, Laura},
  title =	{{Improved Approximations for Flexible Network Design}},
  booktitle =	{32nd Annual European Symposium on Algorithms (ESA 2024)},
  pages =	{74:1--74:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-338-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{308},
  editor =	{Chan, Timothy and Fischer, Johannes and Iacono, John and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2024.74},
  URN =		{urn:nbn:de:0030-drops-211456},
  doi =		{10.4230/LIPIcs.ESA.2024.74},
  annote =	{Keywords: Approximation Algorithms, Network Design, Flexible Connectivity}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2024.43
Inductive Predicate Synthesis Modulo Programs

Authors: Scott Wesley, Maria Christakis, Jorge A. Navas, Richard Trefler, Valentin Wüstholz, and Arie Gurfinkel

Published in: LIPIcs, Volume 313, 38th European Conference on Object-Oriented Programming (ECOOP 2024)

Abstract
A growing trend in program analysis is to encode verification conditions within the language of the input program. This simplifies the design of analysis tools by utilizing off-the-shelf verifiers, but makes communication with the underlying solver more challenging. Essentially, the analysis tools operates at the level of input programs, whereas the solver operates at the level of problem encodings. To bridge this gap, the verifier must pass along proof-rules from the analysis tool to the solver. For example, an analysis tool for concurrent programs built on an inductive program verifier might need to declare Owicki-Gries style proof-rules for the underlying solver. Each such proof-rule further specifies how a program should be verified, meaning that the problem of passing proof-rules is a form of invariant synthesis. Similarly, many program analysis tasks reduce to the synthesis of pure, loop-free Boolean functions (i.e., predicates), relative to a program. From this observation, we propose Inductive Predicate Synthesis Modulo Programs (IPS-MP) which extends high-level languages with minimal synthesis features to guide analysis. In IPS-MP, unknown predicates appear under assume and assert statements, acting as specifications modulo the program semantics. Existing synthesis solvers are inefficient at IPS-MP as they target more general problems. In this paper, we show that IPS-MP admits an efficient solution in the Boolean case, despite being generally undecidable. Moreover, we show that IPS-MP reduces to the satisfiability of constrained Horn clauses, which is less general than existing synthesis problems, yet expressive enough to encode verification tasks. We provide reductions from challenging verification tasks - such as parameterized model checking - to IPS-MP. We realize these reductions with an efficient IPS-MP-solver based on SeaHorn, and describe a real-world application to smart-contract verification.
Cite as

Scott Wesley, Maria Christakis, Jorge A. Navas, Richard Trefler, Valentin Wüstholz, and Arie Gurfinkel. Inductive Predicate Synthesis Modulo Programs. In 38th European Conference on Object-Oriented Programming (ECOOP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 313, pp. 43:1-43:30, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{wesley_et_al:LIPIcs.ECOOP.2024.43,
  author =	{Wesley, Scott and Christakis, Maria and Navas, Jorge A. and Trefler, Richard and W\"{u}stholz, Valentin and Gurfinkel, Arie},
  title =	{{Inductive Predicate Synthesis Modulo Programs}},
  booktitle =	{38th European Conference on Object-Oriented Programming (ECOOP 2024)},
  pages =	{43:1--43:30},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-341-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{313},
  editor =	{Aldrich, Jonathan and Salvaneschi, Guido},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2024.43},
  URN =		{urn:nbn:de:0030-drops-208926},
  doi =		{10.4230/LIPIcs.ECOOP.2024.43},
  annote =	{Keywords: Software Verification, Invariant Synthesis, Model-Checking}
}
Document
DOI: 10.4230/LIPIcs.DNA.30.1
Geometric Enumeration of Localized DNA Strand Displacement Reaction Networks

Authors: Matthew R. Lakin and Sarika Kumar

Published in: LIPIcs, Volume 314, 30th International Conference on DNA Computing and Molecular Programming (DNA 30) (2024)

Abstract
Localized molecular devices are a powerful tool for engineering complex information-processing circuits and molecular robots. Their practical advantages include speed and scalability of interactions between components tethered near to each other on an underlying nanostructure, and the ability to restrict interactions between more distant components. The latter is a critical feature that must be factored into computational tools for the design and simulation of localized molecular devices: unlike in solution-phase systems, the geometries of molecular interactions must be accounted for when attempting to determine the network of possible reactions in a tethered molecular system. This work aims to address that challenge by integrating, for the first time, automated approaches to analysis of molecular geometry with reaction enumeration algorithms for DNA strand displacement reaction networks that can be applied to tethered molecular systems. By adapting a simple approach to solving the biophysical constraints inherent in molecular interactions to be applicable to tethered systems, we produce a localized reaction enumeration system that enhances previous approaches to reaction enumeration in tethered system by not requiring users to explicitly specify the subsets of components that are capable of interacting. This greatly simplifies the user’s task and could also be used as the basis of future systems for automated placement or routing of signal-transmission and logical processing in molecular devices. We apply this system to several published example systems from the literature, including both tethered molecular logic systems and molecular robots.
Cite as

Matthew R. Lakin and Sarika Kumar. Geometric Enumeration of Localized DNA Strand Displacement Reaction Networks. In 30th International Conference on DNA Computing and Molecular Programming (DNA 30). Leibniz International Proceedings in Informatics (LIPIcs), Volume 314, pp. 1:1-1:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{lakin_et_al:LIPIcs.DNA.30.1,
  author =	{Lakin, Matthew R. and Kumar, Sarika},
  title =	{{Geometric Enumeration of Localized DNA Strand Displacement Reaction Networks}},
  booktitle =	{30th International Conference on DNA Computing and Molecular Programming (DNA 30)},
  pages =	{1:1--1:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-344-7},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{314},
  editor =	{Seki, Shinnosuke and Stewart, Jaimie Marie},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.30.1},
  URN =		{urn:nbn:de:0030-drops-209294},
  doi =		{10.4230/LIPIcs.DNA.30.1},
  annote =	{Keywords: Localized circuits, reaction enumeration, DNA strand displacement, geometry, molecular computing}
}
Document
DOI: 10.4230/LIPIcs.DNA.30.3
Simulation of the Abstract Tile Assembly Model Using Crisscross Slats

Authors: Phillip Drake, Daniel Hader, and Matthew J. Patitz

Published in: LIPIcs, Volume 314, 30th International Conference on DNA Computing and Molecular Programming (DNA 30) (2024)

Abstract
The abstract Tile Assembly Model (aTAM) provides an excellent foundation for the mathematical study of DNA-tile-based self-assembling systems, especially those wherein logic is embedded within the designs of the tiles so that they follow prescribed algorithms. While such algorithmic self-assembling systems are theoretically powerful, being computationally universal and capable of building complex shapes using information-theoretically optimal numbers of tiles, physical DNA-based implementations of these systems still encounter formidable error rates and undesired nucleation that hinder this theoretical potential. Slat-based self-assembly is a recent development wherein DNA forms long slats that combine together in 2 layers, rather than square tiles in a plane. In this approach, the length of the slats is key; while tiles typically only bind to 2 neighboring tiles at a time, slats may bind to dozens of other slats. This increased coordination between slats means that several mismatched slats must coincidentally meet in just the right way for errors to persist, unlike tiles where only a few are required. Consequently, while still a novel technology, large slat-based DNA constructions have been successfully implemented in the lab with resilience to many tile-based construction problems. These improved error characteristics come at a cost however, as slat-based systems are often more difficult to design and simulate than tile-based ones. Moreover, it has not been clear whether slats, with their larger sizes and different geometries, have the same theoretical capabilities as tiles. In this paper, we show that slats are capable of doing anything that tiles can, at least at scale. We demonstrate that any aTAM system may be converted to and simulated by an effectively equivalent system of slats. Furthermore, we show that these simulating slat systems can be made more efficiently, using shorter slats and a smaller scale factor, if the simulated tile system avoids certain uncommon growth patterns. Specifically, we consider 5 classes of aTAM systems with increasing complexity, from zig-zag systems which grow in a rigid pattern to the full class of all aTAM systems, and show how they may be converted to equivalent slat systems. We show that the simplest class may be simulated by slats at only a 2c × 2c scale, where c is the freely chosen coordination number of the slats, and further show that the full class of aTAM systems can be simulated at only a 5c × 5c scale. These results prove that slats have the full theoretical power of aTAM tiles while also providing constructions that are compact enough for potential DNA-based implementations of slat systems that are both capable of powerful algorithmic self-assembly and possessing of the strong error resilience of slats.
Cite as

Phillip Drake, Daniel Hader, and Matthew J. Patitz. Simulation of the Abstract Tile Assembly Model Using Crisscross Slats. In 30th International Conference on DNA Computing and Molecular Programming (DNA 30). Leibniz International Proceedings in Informatics (LIPIcs), Volume 314, pp. 3:1-3:25, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{drake_et_al:LIPIcs.DNA.30.3,
  author =	{Drake, Phillip and Hader, Daniel and Patitz, Matthew J.},
  title =	{{Simulation of the Abstract Tile Assembly Model Using Crisscross Slats}},
  booktitle =	{30th International Conference on DNA Computing and Molecular Programming (DNA 30)},
  pages =	{3:1--3:25},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-344-7},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{314},
  editor =	{Seki, Shinnosuke and Stewart, Jaimie Marie},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.30.3},
  URN =		{urn:nbn:de:0030-drops-209315},
  doi =		{10.4230/LIPIcs.DNA.30.3},
  annote =	{Keywords: DNA origami, tile-assembly, self-assembly, aTAM, kinetic modeling, computational modeling}
}
Document
DOI: 10.4230/LIPIcs.CP.2024.28
CP for Bin Packing with Multi-Core and GPUs

Authors: Fabio Tardivo, Laurent Michel, and Enrico Pontelli

Published in: LIPIcs, Volume 307, 30th International Conference on Principles and Practice of Constraint Programming (CP 2024)

Abstract
The BinPacking constraint models the requirements of many logistics, resource allocation, and production scheduling applications. This paper explores new avenues based on the impressive computational power of modern GPUs to propagate the BinPacking constraint. This work showcases how the perspective of massive parallelization can lead to novel approaches, such as the use of a portfolio of lower bounds, to enhance the pruning of the BinPacking constraints. It delivers insights into the design choices and challenges presented by GPU platform for constraint propagation. The paper evaluates a GPU-accelerated propagator against both sequential and parallel CPU versions, as well as state-of-the-art approaches. Comparisons across various benchmarks from the literature show strong performances with respect to both CPU versions and the standard pruning approach. When compared to techniques based on Linear Programming, our approach proves valuable for large instances or when spending extensive time to obtain the best possible bound is not convenient.
Cite as

Fabio Tardivo, Laurent Michel, and Enrico Pontelli. CP for Bin Packing with Multi-Core and GPUs. In 30th International Conference on Principles and Practice of Constraint Programming (CP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 307, pp. 28:1-28:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{tardivo_et_al:LIPIcs.CP.2024.28,
  author =	{Tardivo, Fabio and Michel, Laurent and Pontelli, Enrico},
  title =	{{CP for Bin Packing with Multi-Core and GPUs}},
  booktitle =	{30th International Conference on Principles and Practice of Constraint Programming (CP 2024)},
  pages =	{28:1--28:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-336-2},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{307},
  editor =	{Shaw, Paul},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CP.2024.28},
  URN =		{urn:nbn:de:0030-drops-207138},
  doi =		{10.4230/LIPIcs.CP.2024.28},
  annote =	{Keywords: Constraint Propagation, Bin Packing, Parallelism, GPU, Lower Bounds}
}
Document
DOI: 10.4230/LIPIcs.TQC.2024.8
(Quantum) Complexity of Testing Signed Graph Clusterability

Authors: Kuo-Chin Chen, Simon Apers, and Min-Hsiu Hsieh

Published in: LIPIcs, Volume 310, 19th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2024)

Abstract
This study examines clusterability testing for a signed graph in the bounded-degree model. Our contributions are two-fold. First, we provide a quantum algorithm with query complexity Õ(N^{1/3}) for testing clusterability, which yields a polynomial speedup over the best classical clusterability tester known [Adriaens and Apers, 2023]. Second, we prove an Ω̃(√N) classical query lower bound for testing clusterability, which nearly matches the upper bound from [Adriaens and Apers, 2023]. This settles the classical query complexity of clusterability testing, and it shows that our quantum algorithm has an advantage over any classical algorithm.
Cite as

Kuo-Chin Chen, Simon Apers, and Min-Hsiu Hsieh. (Quantum) Complexity of Testing Signed Graph Clusterability. In 19th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 310, pp. 8:1-8:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{chen_et_al:LIPIcs.TQC.2024.8,
  author =	{Chen, Kuo-Chin and Apers, Simon and Hsieh, Min-Hsiu},
  title =	{{(Quantum) Complexity of Testing Signed Graph Clusterability}},
  booktitle =	{19th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2024)},
  pages =	{8:1--8:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-328-7},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{310},
  editor =	{Magniez, Fr\'{e}d\'{e}ric and Grilo, Alex Bredariol},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.TQC.2024.8},
  URN =		{urn:nbn:de:0030-drops-206786},
  doi =		{10.4230/LIPIcs.TQC.2024.8},
  annote =	{Keywords: Quantum Algorithm, classical Query lower Bound, Graph Property testing}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2024.23
Minimizing Cost Register Automata over a Field

Authors: Yahia Idriss Benalioua, Nathan Lhote, and Pierre-Alain Reynier

Published in: LIPIcs, Volume 306, 49th International Symposium on Mathematical Foundations of Computer Science (MFCS 2024)

Abstract
Weighted automata (WA) are an extension of finite automata that define functions from words to values in a given semiring. An alternative deterministic model, called Cost Register Automata (CRA), was introduced by Alur et al. It enriches deterministic finite automata with a finite number of registers, which store values, updated at each transition using the operations of the semiring. It is known that CRA with register updates defined by linear maps have the same expressiveness as WA. Previous works have studied the register minimization problem: given a function computable by a WA and an integer k, is it possible to realize it using a CRA with at most k registers? In this paper, we solve this problem for CRA over a field with linear register updates, using the notion of linear hull, an algebraic invariant of WA introduced recently by Bell and Smertnig. We then generalise the approach to solve a more challenging problem, that consists in minimizing simultaneously the number of states and that of registers. In addition, we also lift our results to the setting of CRA with affine updates. Last, while the linear hull was recently shown to be computable by Bell and Smertnig, no complexity bounds were given. To fill this gap, we provide two new algorithms to compute invariants of WA. This allows us to show that the register (resp. state-register) minimization problem can be solved in 2-ExpTime (resp. in NExpTime).
Cite as

Yahia Idriss Benalioua, Nathan Lhote, and Pierre-Alain Reynier. Minimizing Cost Register Automata over a Field. In 49th International Symposium on Mathematical Foundations of Computer Science (MFCS 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 306, pp. 23:1-23:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{benalioua_et_al:LIPIcs.MFCS.2024.23,
  author =	{Benalioua, Yahia Idriss and Lhote, Nathan and Reynier, Pierre-Alain},
  title =	{{Minimizing Cost Register Automata over a Field}},
  booktitle =	{49th International Symposium on Mathematical Foundations of Computer Science (MFCS 2024)},
  pages =	{23:1--23:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-335-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{306},
  editor =	{Kr\'{a}lovi\v{c}, Rastislav and Ku\v{c}era, Anton{\'\i}n},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2024.23},
  URN =		{urn:nbn:de:0030-drops-205798},
  doi =		{10.4230/LIPIcs.MFCS.2024.23},
  annote =	{Keywords: Weighted automata, Cost Register automata, Zariski topology}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2024.31
Unveiling the Connection Between the Lyndon Factorization and the Canonical Inverse Lyndon Factorization via a Border Property

Authors: Paola Bonizzoni, Clelia De Felice, Brian Riccardi, Rocco Zaccagnino, and Rosalba Zizza

Published in: LIPIcs, Volume 306, 49th International Symposium on Mathematical Foundations of Computer Science (MFCS 2024)

Abstract
The notion of Lyndon word and Lyndon factorization has shown to have unexpected applications in theory as well as in developing novel algorithms on words. A counterpart to these notions are those of inverse Lyndon word and inverse Lyndon factorization. Differently from the Lyndon words, the inverse Lyndon words may be bordered. The relationship between the two factorizations is related to the inverse lexicographic ordering, and has only been recently explored. More precisely, a main open question is how to get an inverse Lyndon factorization from a classical Lyndon factorization under the inverse lexicographic ordering, named CFL_in. In this paper we reveal a strong connection between these two factorizations where the border plays a relevant role. More precisely, we show two main results. We say that a factorization has the border property if a nonempty border of a factor cannot be a prefix of the next factor. First we show that there exists a unique inverse Lyndon factorization having the border property. Then we show that this unique factorization with the border property is the so-called canonical inverse Lyndon factorization, named ICFL. By showing that ICFL is obtained by compacting factors of the Lyndon factorization over the inverse lexicographic ordering, we provide a linear time algorithm for computing ICFL from CFL_in.
Cite as

Paola Bonizzoni, Clelia De Felice, Brian Riccardi, Rocco Zaccagnino, and Rosalba Zizza. Unveiling the Connection Between the Lyndon Factorization and the Canonical Inverse Lyndon Factorization via a Border Property. In 49th International Symposium on Mathematical Foundations of Computer Science (MFCS 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 306, pp. 31:1-31:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{bonizzoni_et_al:LIPIcs.MFCS.2024.31,
  author =	{Bonizzoni, Paola and De Felice, Clelia and Riccardi, Brian and Zaccagnino, Rocco and Zizza, Rosalba},
  title =	{{Unveiling the Connection Between the Lyndon Factorization and the Canonical Inverse Lyndon Factorization via a Border Property}},
  booktitle =	{49th International Symposium on Mathematical Foundations of Computer Science (MFCS 2024)},
  pages =	{31:1--31:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-335-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{306},
  editor =	{Kr\'{a}lovi\v{c}, Rastislav and Ku\v{c}era, Anton{\'\i}n},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2024.31},
  URN =		{urn:nbn:de:0030-drops-205879},
  doi =		{10.4230/LIPIcs.MFCS.2024.31},
  annote =	{Keywords: Lyndon words, Lyndon factorization, Combinatorial algorithms on words}
}
Document
DOI: 10.4230/LIPIcs.CCC.2024.7
Polynomial Pass Semi-Streaming Lower Bounds for K-Cores and Degeneracy

Authors: Sepehr Assadi, Prantar Ghosh, Bruno Loff, Parth Mittal, and Sagnik Mukhopadhyay

Published in: LIPIcs, Volume 300, 39th Computational Complexity Conference (CCC 2024)

Abstract
The following question arises naturally in the study of graph streaming algorithms: Is there any graph problem which is "not too hard", in that it can be solved efficiently with total communication (nearly) linear in the number n of vertices, and for which, nonetheless, any streaming algorithm with Õ(n) space (i.e., a semi-streaming algorithm) needs a polynomial n^Ω(1) number of passes? Assadi, Chen, and Khanna [STOC 2019] were the first to prove that this is indeed the case. However, the lower bounds that they obtained are for rather non-standard graph problems. Our first main contribution is to present the first polynomial-pass lower bounds for natural "not too hard" graph problems studied previously in the streaming model: k-cores and degeneracy. We devise a novel communication protocol for both problems with near-linear communication, thus showing that k-cores and degeneracy are natural examples of "not too hard" problems. Indeed, previous work have developed single-pass semi-streaming algorithms for approximating these problems. In contrast, we prove that any semi-streaming algorithm for exactly solving these problems requires (almost) Ω(n^{1/3}) passes. The lower bound follows by a reduction from a generalization of the hidden pointer chasing (HPC) problem of Assadi, Chen, and Khanna, which is also the basis of their earlier semi-streaming lower bounds. Our second main contribution is improved round-communication lower bounds for the underlying communication problems at the basis of these reductions: - We improve the previous lower bound of Assadi, Chen, and Khanna for HPC to achieve optimal bounds for this problem. - We further observe that all current reductions from HPC can also work with a generalized version of this problem that we call MultiHPC, and prove an even stronger and optimal lower bound for this generalization. These two results collectively allow us to improve the resulting pass lower bounds for semi-streaming algorithms by a polynomial factor, namely, from n^{1/5} to n^{1/3} passes.
Cite as

Sepehr Assadi, Prantar Ghosh, Bruno Loff, Parth Mittal, and Sagnik Mukhopadhyay. Polynomial Pass Semi-Streaming Lower Bounds for K-Cores and Degeneracy. In 39th Computational Complexity Conference (CCC 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 300, pp. 7:1-7:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{assadi_et_al:LIPIcs.CCC.2024.7,
  author =	{Assadi, Sepehr and Ghosh, Prantar and Loff, Bruno and Mittal, Parth and Mukhopadhyay, Sagnik},
  title =	{{Polynomial Pass Semi-Streaming Lower Bounds for K-Cores and Degeneracy}},
  booktitle =	{39th Computational Complexity Conference (CCC 2024)},
  pages =	{7:1--7:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-331-7},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{300},
  editor =	{Santhanam, Rahul},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CCC.2024.7},
  URN =		{urn:nbn:de:0030-drops-204035},
  doi =		{10.4230/LIPIcs.CCC.2024.7},
  annote =	{Keywords: Graph streaming, Lower bounds, Communication complexity, k-Cores and degeneracy}
}
Document
DOI: 10.4230/LIPIcs.SEA.2024.1
Move-r: Optimizing the r-index

Authors: Nico Bertram, Johannes Fischer, and Lukas Nalbach

Published in: LIPIcs, Volume 301, 22nd International Symposium on Experimental Algorithms (SEA 2024)

Abstract
We present a static text index called Move-r, which is a highly optimized version of the r-index ([Travis Gagie et al., 2020] Gagie et al., 2020) that encorporates recent theoretical developments of the move data structure ([Takaaki Nishimoto and Yasuo Tabei, 2021] Nishimoto and Tabei, 2021). The r-index is the method of choice for indexing highly repetitive texts, such as different versions of a text document or DNA from the same species, as it exploits the compressibilty of the underlying data. With Move-r, we can answer count- and locate queries 2-35 (typically 15) times as fast as with any other r-index supporting locate queries while being 0.8-2.5 (typically 2) times as large. A Move-r index can be constructed 0.9-2 (typically 2) times as fast while using 1/3-1 (typically 1/2) times as much space.
Cite as

Nico Bertram, Johannes Fischer, and Lukas Nalbach. Move-r: Optimizing the r-index. In 22nd International Symposium on Experimental Algorithms (SEA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 301, pp. 1:1-1:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{bertram_et_al:LIPIcs.SEA.2024.1,
  author =	{Bertram, Nico and Fischer, Johannes and Nalbach, Lukas},
  title =	{{Move-r: Optimizing the r-index}},
  booktitle =	{22nd International Symposium on Experimental Algorithms (SEA 2024)},
  pages =	{1:1--1:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-325-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{301},
  editor =	{Liberti, Leo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2024.1},
  URN =		{urn:nbn:de:0030-drops-203662},
  doi =		{10.4230/LIPIcs.SEA.2024.1},
  annote =	{Keywords: Compressed Text Index, Burrows-Wheeler Transform}
}
Document
DOI: 10.4230/LIPIcs.SEA.2024.5
Buffered Streaming Edge Partitioning

Authors: Adil Chhabra, Marcelo Fonseca Faraj, Christian Schulz, and Daniel Seemaier

Published in: LIPIcs, Volume 301, 22nd International Symposium on Experimental Algorithms (SEA 2024)

Abstract
Addressing the challenges of processing massive graphs, which are prevalent in diverse fields such as social, biological, and technical networks, we introduce HeiStreamE and FreightE, two innovative (buffered) streaming algorithms designed for efficient edge partitioning of large-scale graphs. HeiStreamE utilizes an adapted Split-and-Connect graph model and a Fennel-based multilevel partitioning scheme, while FreightE partitions a hypergraph representation of the input graph. Besides ensuring superior solution quality, these approaches also overcome the limitations of existing algorithms by maintaining linear dependency on the graph size in both time and memory complexity with no dependence on the number of blocks of partition. Our comprehensive experimental analysis demonstrates that HeiStreamE outperforms current streaming algorithms and the re-streaming algorithm 2PS in partitioning quality (replication factor), and is more memory-efficient for real-world networks where the number of edges is far greater than the number of vertices. Further, FreightE is shown to produce fast and efficient partitions, particularly for higher numbers of partition blocks.
Cite as

Adil Chhabra, Marcelo Fonseca Faraj, Christian Schulz, and Daniel Seemaier. Buffered Streaming Edge Partitioning. In 22nd International Symposium on Experimental Algorithms (SEA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 301, pp. 5:1-5:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{chhabra_et_al:LIPIcs.SEA.2024.5,
  author =	{Chhabra, Adil and Fonseca Faraj, Marcelo and Schulz, Christian and Seemaier, Daniel},
  title =	{{Buffered Streaming Edge Partitioning}},
  booktitle =	{22nd International Symposium on Experimental Algorithms (SEA 2024)},
  pages =	{5:1--5:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-325-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{301},
  editor =	{Liberti, Leo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2024.5},
  URN =		{urn:nbn:de:0030-drops-203701},
  doi =		{10.4230/LIPIcs.SEA.2024.5},
  annote =	{Keywords: graph partitioning, edge partitioning, streaming, online, buffered partitioning}
}
Document
DOI: 10.4230/LIPIcs.SEA.2024.15
Determining Fixed-Length Paths in Directed and Undirected Edge-Weighted Graphs

Authors: Daniel Hambly, Rhyd Lewis, and Padraig Corcoran

Published in: LIPIcs, Volume 301, 22nd International Symposium on Experimental Algorithms (SEA 2024)

Abstract
In this paper, we examine the NP-hard problem of identifying fixed-length s-t paths in edge-weighted graphs - that is, a path of a desired length k from a source vertex s to a target vertex t. Many existing strategies look at paths whose lengths are determined by the number of edges in the path. We, however, look at the length of the path as the sum of the edge weights. Here, three exact algorithms for this problem are proposed: the first based on an integer programming (IP) formulation, the second a backtracking algorithm, and the third based on an extension of Yen’s algorithm. Analysis of these algorithms on random graphs shows that the backtracking algorithm performs best on smaller values of k, whilst the IP is preferable for larger values of k.
Cite as

Daniel Hambly, Rhyd Lewis, and Padraig Corcoran. Determining Fixed-Length Paths in Directed and Undirected Edge-Weighted Graphs. In 22nd International Symposium on Experimental Algorithms (SEA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 301, pp. 15:1-15:11, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{hambly_et_al:LIPIcs.SEA.2024.15,
  author =	{Hambly, Daniel and Lewis, Rhyd and Corcoran, Padraig},
  title =	{{Determining Fixed-Length Paths in Directed and Undirected Edge-Weighted Graphs}},
  booktitle =	{22nd International Symposium on Experimental Algorithms (SEA 2024)},
  pages =	{15:1--15:11},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-325-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{301},
  editor =	{Liberti, Leo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2024.15},
  URN =		{urn:nbn:de:0030-drops-203805},
  doi =		{10.4230/LIPIcs.SEA.2024.15},
  annote =	{Keywords: Graphs, paths, backtracking, integer programming, Yen’s algorithm}
}
Document
DOI: 10.4230/LIPIcs.FSCD.2024.14
Two-Dimensional Kripke Semantics I: Presheaves

Authors: G. A. Kavvos

Published in: LIPIcs, Volume 299, 9th International Conference on Formal Structures for Computation and Deduction (FSCD 2024)

Abstract
The study of modal logic has witnessed tremendous development following the introduction of Kripke semantics. However, recent developments in programming languages and type theory have led to a second way of studying modalities, namely through their categorical semantics. We show how the two correspond.
Cite as

G. A. Kavvos. Two-Dimensional Kripke Semantics I: Presheaves. In 9th International Conference on Formal Structures for Computation and Deduction (FSCD 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 299, pp. 14:1-14:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{kavvos:LIPIcs.FSCD.2024.14,
  author =	{Kavvos, G. A.},
  title =	{{Two-Dimensional Kripke Semantics I: Presheaves}},
  booktitle =	{9th International Conference on Formal Structures for Computation and Deduction (FSCD 2024)},
  pages =	{14:1--14:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-323-2},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{299},
  editor =	{Rehof, Jakob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSCD.2024.14},
  URN =		{urn:nbn:de:0030-drops-203438},
  doi =		{10.4230/LIPIcs.FSCD.2024.14},
  annote =	{Keywords: modal logic, categorical semantics, Kripke semantics, duality, open maps}
}
Document
Position
DOI: 10.4230/TGDK.2.1.2
Grounding Stream Reasoning Research

Authors: Pieter Bonte, Jean-Paul Calbimonte, Daniel de Leng, Daniele Dell'Aglio, Emanuele Della Valle, Thomas Eiter, Federico Giannini, Fredrik Heintz, Konstantin Schekotihin, Danh Le-Phuoc, Alessandra Mileo, Patrik Schneider, Riccardo Tommasini, Jacopo Urbani, and Giacomo Ziffer

Published in: TGDK, Volume 2, Issue 1 (2024): Special Issue on Trends in Graph Data and Knowledge - Part 2. Transactions on Graph Data and Knowledge, Volume 2, Issue 1

Abstract
In the last decade, there has been a growing interest in applying AI technologies to implement complex data analytics over data streams. To this end, researchers in various fields have been organising a yearly event called the "Stream Reasoning Workshop" to share perspectives, challenges, and experiences around this topic. In this paper, the previous organisers of the workshops and other community members provide a summary of the main research results that have been discussed during the first six editions of the event. These results can be categorised into four main research areas: The first is concerned with the technological challenges related to handling large data streams. The second area aims at adapting and extending existing semantic technologies to data streams. The third and fourth areas focus on how to implement reasoning techniques, either considering deductive or inductive techniques, to extract new and valuable knowledge from the data in the stream. This summary is written not only to provide a crystallisation of the field, but also to point out distinctive traits of the stream reasoning community. Moreover, it also provides a foundation for future research by enumerating a list of use cases and open challenges, to stimulate others to join this exciting research area.
Cite as

Pieter Bonte, Jean-Paul Calbimonte, Daniel de Leng, Daniele Dell'Aglio, Emanuele Della Valle, Thomas Eiter, Federico Giannini, Fredrik Heintz, Konstantin Schekotihin, Danh Le-Phuoc, Alessandra Mileo, Patrik Schneider, Riccardo Tommasini, Jacopo Urbani, and Giacomo Ziffer. Grounding Stream Reasoning Research. In Special Issue on Trends in Graph Data and Knowledge - Part 2. Transactions on Graph Data and Knowledge (TGDK), Volume 2, Issue 1, pp. 2:1-2:47, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@Article{bonte_et_al:TGDK.2.1.2,
  author =	{Bonte, Pieter and Calbimonte, Jean-Paul and de Leng, Daniel and Dell'Aglio, Daniele and Della Valle, Emanuele and Eiter, Thomas and Giannini, Federico and Heintz, Fredrik and Schekotihin, Konstantin and Le-Phuoc, Danh and Mileo, Alessandra and Schneider, Patrik and Tommasini, Riccardo and Urbani, Jacopo and Ziffer, Giacomo},
  title =	{{Grounding Stream Reasoning Research}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{2:1--2:47},
  ISSN =	{2942-7517},
  year =	{2024},
  volume =	{2},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.2.1.2},
  URN =		{urn:nbn:de:0030-drops-198597},
  doi =		{10.4230/TGDK.2.1.2},
  annote =	{Keywords: Stream Reasoning, Stream Processing, RDF streams, Streaming Linked Data, Continuous query processing, Temporal Logics, High-performance computing, Databases}
}
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